-
1
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee R.C., et al. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75:843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
-
2
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He L., Hannon G.J. MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 2004, 5:522-531.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
3
-
-
58449134534
-
Small silencing RNAs: an expanding universe
-
Ghildiyal M., Zamore P.D. Small silencing RNAs: an expanding universe. Nat. Rev. Genet. 2009, 10:94-108.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
4
-
-
79751485564
-
The many faces of RNAi
-
Ketting R.F. The many faces of RNAi. Dev. Cell 2011, 20:148-161.
-
(2011)
Dev. Cell
, vol.20
, pp. 148-161
-
-
Ketting, R.F.1
-
5
-
-
84868589615
-
Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines
-
Ishizu H., et al. Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines. Genes Dev. 2012, 26:2361-2373.
-
(2012)
Genes Dev.
, vol.26
, pp. 2361-2373
-
-
Ishizu, H.1
-
6
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew R.W., Sontheimer E.J. Origins and mechanisms of miRNAs and siRNAs. Cell 2009, 136:642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
7
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
8
-
-
77957226018
-
MicroRNAs and cellular phenotypy
-
Kosik K.S. MicroRNAs and cellular phenotypy. Cell 2010, 143:21-26.
-
(2010)
Cell
, vol.143
, pp. 21-26
-
-
Kosik, K.S.1
-
10
-
-
77649193420
-
Ancient animal microRNAs and the evolution of tissue identity
-
Christodoulou F., et al. Ancient animal microRNAs and the evolution of tissue identity. Nature 2010, 463:1084-1088.
-
(2010)
Nature
, vol.463
, pp. 1084-1088
-
-
Christodoulou, F.1
-
11
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A., et al. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 2008, 455:1193-1197.
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
-
12
-
-
84883533072
-
A review of computational tools in microRNA discovery
-
Gomes C.P.C., et al. A review of computational tools in microRNA discovery. Front. Bioinform. Comput. Biol. 2013, 4:81.
-
(2013)
Front. Bioinform. Comput. Biol.
, vol.4
, pp. 81
-
-
Gomes, C.P.C.1
-
13
-
-
78651293534
-
MiRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A., Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39:D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
14
-
-
77952680189
-
Identification of homologous microRNAs in 56 animal genomes
-
Li S-C., et al. Identification of homologous microRNAs in 56 animal genomes. Genomics 2010, 96:1-9.
-
(2010)
Genomics
, vol.96
, pp. 1-9
-
-
Li, S.-C.1
-
15
-
-
84891815183
-
MiRNEST 2.0: a database of plant and animal microRNAs
-
Szcześniak M.W., Makałowska I. miRNEST 2.0: a database of plant and animal microRNAs. Nucleic Acids Res. 2014, 42:D74-D77.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D74-D77
-
-
Szcześniak, M.W.1
Makałowska, I.2
-
16
-
-
77649115847
-
MiRMaid: a unified programming interface for microRNA data resources
-
Jacobsen A., et al. miRMaid: a unified programming interface for microRNA data resources. BMC Bioinformatics 2010, 11:29.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 29
-
-
Jacobsen, A.1
-
17
-
-
84904985459
-
Regulation of microRNA biogenesis
-
Ha M., Kim V.N. Regulation of microRNA biogenesis. Nat. Rev. Mol. Cell Biol. 2014, 15:509-524.
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 509-524
-
-
Ha, M.1
Kim, V.N.2
-
18
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin R.D., et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 2008, 18:610-621.
-
(2008)
Genome Res.
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
-
20
-
-
59649103076
-
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate
-
Shi W., et al. A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate. Nat. Struct. Mol. Biol. 2009, 16:183-189.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 183-189
-
-
Shi, W.1
-
21
-
-
69849100181
-
Evidence for human microRNA-offset RNAs in small RNA sequencing data
-
Langenberger D., et al. Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinformatics 2009, 25:2298-2301.
-
(2009)
Bioinformatics
, vol.25
, pp. 2298-2301
-
-
Langenberger, D.1
-
22
-
-
84864436656
-
Deep annotation of mouse iso-miR and iso-moR variation
-
Zhou H., et al. Deep annotation of mouse iso-miR and iso-moR variation. Nucleic Acids Res. 2012, 40:5864-5875.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5864-5875
-
-
Zhou, H.1
-
23
-
-
84876351771
-
Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals
-
Okamura K., et al. Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes Dev. 2013, 27:778-792.
-
(2013)
Genes Dev.
, vol.27
, pp. 778-792
-
-
Okamura, K.1
-
24
-
-
84876349900
-
Loop-miRs: active microRNAs generated from single-stranded loop regions
-
Winter J., et al. Loop-miRs: active microRNAs generated from single-stranded loop regions. Nucleic Acids Res. 2013, 41:5503-5512.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5503-5512
-
-
Winter, J.1
-
25
-
-
61849137222
-
Many roads to maturity: microRNA biogenesis pathways and their regulation
-
Winter J., et al. Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat. Cell Biol. 2009, 11:228-234.
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 228-234
-
-
Winter, J.1
-
26
-
-
69949127421
-
Structural determinants of miRNAs for RISC loading and slicer-independent unwinding
-
Kawamata T., et al. Structural determinants of miRNAs for RISC loading and slicer-independent unwinding. Nat. Struct. Mol. Biol. 2009, 16:953-960.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 953-960
-
-
Kawamata, T.1
-
27
-
-
84856723932
-
The N domain of Argonaute drives duplex unwinding during RISC assembly
-
Kwak P.B., Tomari Y. The N domain of Argonaute drives duplex unwinding during RISC assembly. Nat. Struct. Mol. Biol. 2012, 19:145-151.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 145-151
-
-
Kwak, P.B.1
Tomari, Y.2
-
28
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
29
-
-
77955475953
-
Expanding the microRNA targeting code: functional sites with centered pairing
-
Shin C., et al. Expanding the microRNA targeting code: functional sites with centered pairing. Mol. Cell 2010, 38:789-802.
-
(2010)
Mol. Cell
, vol.38
, pp. 789-802
-
-
Shin, C.1
-
30
-
-
84883529219
-
Mammalian miRNA curation through next-generation sequencing
-
Brown M., et al. Mammalian miRNA curation through next-generation sequencing. Front. Genet. 2013, 4:145.
-
(2013)
Front. Genet.
, vol.4
, pp. 145
-
-
Brown, M.1
-
31
-
-
79956087842
-
Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
-
Hansen T.B., et al. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. RNA Biol. 2011, 8:378-383.
-
(2011)
RNA Biol.
, vol.8
, pp. 378-383
-
-
Hansen, T.B.1
-
33
-
-
84891818318
-
MiRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara A., Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2013, 42:D68-D73.
-
(2013)
Nucleic Acids Res.
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
34
-
-
85011936073
-
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin
-
Burroughs A.M., et al. Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin. RNA Biol. 2011, 8:158-177.
-
(2011)
RNA Biol.
, vol.8
, pp. 158-177
-
-
Burroughs, A.M.1
-
35
-
-
34447107760
-
The miRtron pathway generates microRNA-class regulatory RNAs in Drosophila
-
Okamura K., et al. The miRtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 2007, 130:89-100.
-
(2007)
Cell
, vol.130
, pp. 89-100
-
-
Okamura, K.1
-
36
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby J.G., et al. Intronic microRNA precursors that bypass Drosha processing. Nature 2007, 448:83-86.
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
-
37
-
-
35348933779
-
Mammalian miRtron genes
-
Berezikov E., et al. Mammalian miRtron genes. Mol. Cell 2007, 28:328-336.
-
(2007)
Mol. Cell
, vol.28
, pp. 328-336
-
-
Berezikov, E.1
-
38
-
-
79551585565
-
Expression patterns of intronic microRNAs in Caenorhabditis elegans
-
Isik M., et al. Expression patterns of intronic microRNAs in Caenorhabditis elegans. Silence 2010, 1:5.
-
(2010)
Silence
, vol.1
, pp. 5
-
-
Isik, M.1
-
39
-
-
84890696135
-
Biogenesis of intronic miRNAs located in clusters by independent transcription and alternative splicing
-
Ramalingam P., et al. Biogenesis of intronic miRNAs located in clusters by independent transcription and alternative splicing. RNA 2013, 20:76-87.
-
(2013)
RNA
, vol.20
, pp. 76-87
-
-
Ramalingam, P.1
-
40
-
-
84901392289
-
Evolution of the miR199-214 cluster and vertebrate skeletal development
-
Desvignes T., et al. Evolution of the miR199-214 cluster and vertebrate skeletal development. RNA Biol. 2014, 11:281-294.
-
(2014)
RNA Biol.
, vol.11
, pp. 281-294
-
-
Desvignes, T.1
-
41
-
-
77953183812
-
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
-
Cheloufi S., et al. A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 2010, 465:584-589.
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
-
42
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
Cifuentes D., et al. A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 2010, 328:1694-1698.
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
-
43
-
-
4444368187
-
Argonaute2 is the catalytic engine of mammalian RNAi
-
Liu J., et al. Argonaute2 is the catalytic engine of mammalian RNAi. Science 2004, 305:1437-1441.
-
(2004)
Science
, vol.305
, pp. 1437-1441
-
-
Liu, J.1
-
44
-
-
77956995245
-
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis
-
Yang J-S., et al. Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:15163-15168.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15163-15168
-
-
Yang, J.-S.1
-
45
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
Ender C., et al. A human snoRNA with microRNA-like functions. Mol. Cell 2008, 32:519-528.
-
(2008)
Mol. Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
-
46
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
Taft R.J., et al. Small RNAs derived from snoRNAs. RNA 2009, 15:1233-1240.
-
(2009)
RNA
, vol.15
, pp. 1233-1240
-
-
Taft, R.J.1
-
47
-
-
79551499254
-
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
-
Brameier M., et al. Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res. 2011, 39:675-686.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 675-686
-
-
Brameier, M.1
-
48
-
-
80053574876
-
From snoRNA to miRNA: dual function regulatory non-coding RNAs
-
Scott M.S., Ono M. From snoRNA to miRNA: dual function regulatory non-coding RNAs. Biochimie 2011, 93:1987-1992.
-
(2011)
Biochimie
, vol.93
, pp. 1987-1992
-
-
Scott, M.S.1
Ono, M.2
-
49
-
-
84863219731
-
The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r
-
Keniry A., et al. The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r. Nat. Cell Biol. 2012, 14:659-665.
-
(2012)
Nat. Cell Biol.
, vol.14
, pp. 659-665
-
-
Keniry, A.1
-
50
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
-
Babiarz J.E., et al. Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev. 2008, 22:2773-2785.
-
(2008)
Genes Dev.
, vol.22
, pp. 2773-2785
-
-
Babiarz, J.E.1
-
51
-
-
84873053589
-
Noncanonical microRNAs and endogenous siRNAs in normal and psoriatic human skin
-
Xia J., et al. Noncanonical microRNAs and endogenous siRNAs in normal and psoriatic human skin. Hum. Mol. Genet. 2013, 22:737-748.
-
(2013)
Hum. Mol. Genet.
, vol.22
, pp. 737-748
-
-
Xia, J.1
-
52
-
-
84885176213
-
3K pathway
-
3K pathway. Nat. Cell Biol. 2013, 15:1153-1163.
-
(2013)
Nat. Cell Biol.
, vol.15
, pp. 1153-1163
-
-
Wang, D.1
-
53
-
-
77955290050
-
Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production
-
Miyoshi K., et al. Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production. Mol. Genet. Genomics 2010, 284:95-103.
-
(2010)
Mol. Genet. Genomics
, vol.284
, pp. 95-103
-
-
Miyoshi, K.1
-
54
-
-
84861968721
-
Small non-coding RNAs mount a silent revolution in gene expression
-
Aalto A.P., Pasquinelli A.E. Small non-coding RNAs mount a silent revolution in gene expression. Curr. Opin. Cell Biol. 2012, 24:333-340.
-
(2012)
Curr. Opin. Cell Biol.
, vol.24
, pp. 333-340
-
-
Aalto, A.P.1
Pasquinelli, A.E.2
-
55
-
-
50149095122
-
Endogenous small interfering RNAs in animals
-
Okamura K., Lai E.C. Endogenous small interfering RNAs in animals. Nat. Rev. Mol. Cell Biol. 2008, 9:673-678.
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 673-678
-
-
Okamura, K.1
Lai, E.C.2
-
56
-
-
58849112575
-
Biogenesis of small RNAs in animals
-
Kim V.N., et al. Biogenesis of small RNAs in animals. Nat. Rev. Mol. Cell Biol. 2009, 10:126-139.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 126-139
-
-
Kim, V.N.1
-
57
-
-
84863799077
-
Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation
-
Chen L., et al. Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation. Epigenetics 2012, 7:758-771.
-
(2012)
Epigenetics
, vol.7
, pp. 758-771
-
-
Chen, L.1
-
58
-
-
79955379930
-
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
-
Axtell M.J., et al. Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 2011, 12:221.
-
(2011)
Genome Biol.
, vol.12
, pp. 221
-
-
Axtell, M.J.1
-
59
-
-
84898725704
-
Cnidarian microRNAs frequently regulate targets by cleavage
-
Published online March 18, 2014
-
Moran Y., et al. Cnidarian microRNAs frequently regulate targets by cleavage. Genome Res. 2014, Published online March 18, 2014. 10.1101/gr.162503.113.
-
(2014)
Genome Res.
-
-
Moran, Y.1
-
60
-
-
34249660747
-
Ro-associated Y RNAs in metazoans: evolution and diversification
-
Perreault J., et al. Ro-associated Y RNAs in metazoans: evolution and diversification. Mol. Biol. Evol. 2007, 24:1678-1689.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1678-1689
-
-
Perreault, J.1
-
61
-
-
68949218923
-
Evolution of vault RNAs
-
Stadler P.F., et al. Evolution of vault RNAs. Mol. Biol. Evol. 2009, 26:1975-1991.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1975-1991
-
-
Stadler, P.F.1
-
62
-
-
84903548008
-
Expanding the annotation of zebrafish microRNAs based on small RNA sequencing
-
Desvignes T., et al. Expanding the annotation of zebrafish microRNAs based on small RNA sequencing. Gene 2014, 546:386-389.
-
(2014)
Gene
, vol.546
, pp. 386-389
-
-
Desvignes, T.1
-
63
-
-
70349652191
-
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
-
Persson H., et al. The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. Nat. Cell Biol. 2009, 11:1268-1271.
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 1268-1271
-
-
Persson, H.1
-
64
-
-
78049446142
-
Discovery of microRNAs and other small RNAs in solid tumors
-
Meiri E., et al. Discovery of microRNAs and other small RNAs in solid tumors. Nucleic Acids Res. 2010, 38:6234-6246.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6234-6246
-
-
Meiri, E.1
-
65
-
-
84859897419
-
Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway
-
Nicolas F.E., et al. Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Lett. 2012, 586:1226-1230.
-
(2012)
FEBS Lett.
, vol.586
, pp. 1226-1230
-
-
Nicolas, F.E.1
-
66
-
-
80051668530
-
Are the Ro RNP-associated Y RNAs concealing microRNAs? Y RNA-derived miRNAs may be involved in autoimmunity
-
Verhagen A.P.M., Pruijn G.J.M. Are the Ro RNP-associated Y RNAs concealing microRNAs? Y RNA-derived miRNAs may be involved in autoimmunity. Bioessays 2011, 33:674-682.
-
(2011)
Bioessays
, vol.33
, pp. 674-682
-
-
Verhagen, A.P.M.1
Pruijn, G.J.M.2
-
67
-
-
22044443709
-
The Sequence Ontology: a tool for the unification of genome annotations
-
Eilbeck K., et al. The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol. 2005, 6:R44.
-
(2005)
Genome Biol.
, vol.6
, pp. R44
-
-
Eilbeck, K.1
-
68
-
-
84876580870
-
The Mouse Genome Database: genotypes, phenotypes, and models of human disease
-
Bult C.J., et al. The Mouse Genome Database: genotypes, phenotypes, and models of human disease. Nucleic Acids Res. 2012, 41:D885-D891.
-
(2012)
Nucleic Acids Res.
, vol.41
, pp. D885-D891
-
-
Bult, C.J.1
-
69
-
-
84876569864
-
Genenames.org: the HGNC resources in 2013
-
Gray K.A., et al. Genenames.org: the HGNC resources in 2013. Nucleic Acids Res. 2013, 41:D545-D552.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D545-D552
-
-
Gray, K.A.1
-
70
-
-
84888772878
-
The Rat Genome Database 2013 - data, tools and users
-
Laulederkind S.J.F., et al. The Rat Genome Database 2013 - data, tools and users. Brief. Bioinform. 2013, 14:520-526.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 520-526
-
-
Laulederkind, S.J.F.1
-
71
-
-
78651364359
-
ZFIN: enhancements and updates to the zebrafish model organism database
-
Bradford Y., et al. ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Res. 2011, 39:D822-D829.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D822-D829
-
-
Bradford, Y.1
-
72
-
-
0032573579
-
Zebrafish hox clusters and vertebrate genome evolution
-
Amores A., et al. Zebrafish hox clusters and vertebrate genome evolution. Science 1998, 282:1711-1714.
-
(1998)
Science
, vol.282
, pp. 1711-1714
-
-
Amores, A.1
-
73
-
-
84949175314
-
Polyploidy in fish and the teleost genome duplication
-
Springer, P.S. Soltis, D.E. Soltis (Eds.)
-
Braasch I., Postlethwait J.H. Polyploidy in fish and the teleost genome duplication. Polyploidy and Genome Evolution 2012, 341-383. Springer. P.S. Soltis, D.E. Soltis (Eds.).
-
(2012)
Polyploidy and Genome Evolution
, pp. 341-383
-
-
Braasch, I.1
Postlethwait, J.H.2
-
75
-
-
41649089309
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution
-
Okamura K., et al. The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution. Nat. Struct. Mol. Biol. 2008, 15:354-363.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 354-363
-
-
Okamura, K.1
-
76
-
-
70449127022
-
Hierarchical rules for Argonaute loading in Drosophila
-
Czech B., et al. Hierarchical rules for Argonaute loading in Drosophila. Mol. Cell 2009, 36:445-456.
-
(2009)
Mol. Cell
, vol.36
, pp. 445-456
-
-
Czech, B.1
-
77
-
-
70449122099
-
Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
-
Okamura K., et al. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol. Cell 2009, 36:431-444.
-
(2009)
Mol. Cell
, vol.36
, pp. 431-444
-
-
Okamura, K.1
-
78
-
-
78751561955
-
Widespread regulatory activity of vertebrate microRNA* species
-
Yang J-S., et al. Widespread regulatory activity of vertebrate microRNA* species. RNA 2011, 17:312-326.
-
(2011)
RNA
, vol.17
, pp. 312-326
-
-
Yang, J.-S.1
-
79
-
-
33745813856
-
The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells
-
Tuddenham L., et al. The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells. FEBS Lett. 2006, 580:4214-4217.
-
(2006)
FEBS Lett.
, vol.580
, pp. 4214-4217
-
-
Tuddenham, L.1
-
80
-
-
39749151652
-
MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis
-
Eberhart J.K., et al. MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. Nat. Genet. 2008, 40:290-298.
-
(2008)
Nat. Genet.
, vol.40
, pp. 290-298
-
-
Eberhart, J.K.1
-
81
-
-
84882261458
-
MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis
-
Rakoczy J., et al. MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis. Biol. Reprod. 2013, 88:143.
-
(2013)
Biol. Reprod.
, vol.88
, pp. 143
-
-
Rakoczy, J.1
-
82
-
-
38149022486
-
Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
-
Tyler D.M., et al. Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev. 2008, 22:26-36.
-
(2008)
Genes Dev.
, vol.22
, pp. 26-36
-
-
Tyler, D.M.1
-
83
-
-
84860354253
-
MiR-3120 is a mirror microRNA that targets heat shock cognate protein 70 and auxilin messenger RNAs and regulates clathrin vesicle uncoating
-
Scott H., et al. MiR-3120 is a mirror microRNA that targets heat shock cognate protein 70 and auxilin messenger RNAs and regulates clathrin vesicle uncoating. J. Biol. Chem. 2012, 287:14726-14733.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14726-14733
-
-
Scott, H.1
-
84
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
Dehal P., Boore J.L. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 2005, 3:e314.
-
(2005)
PLoS Biol.
, vol.3
, pp. e314
-
-
Dehal, P.1
Boore, J.L.2
-
85
-
-
34548420992
-
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
-
Nakatani Y., et al. Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res. 2007, 17:1254-1265.
-
(2007)
Genome Res.
, vol.17
, pp. 1254-1265
-
-
Nakatani, Y.1
-
86
-
-
60849112259
-
Annotation of mammalian primary microRNAs
-
Saini H.K., et al. Annotation of mammalian primary microRNAs. BMC Genomics 2008, 9:564.
-
(2008)
BMC Genomics
, vol.9
, pp. 564
-
-
Saini, H.K.1
-
87
-
-
84867736206
-
IsomiRs - the overlooked repertoire in the dynamic microRNAome
-
Neilsen C.T., et al. IsomiRs - the overlooked repertoire in the dynamic microRNAome. Trends Genet. 2012, 28:544-549.
-
(2012)
Trends Genet.
, vol.28
, pp. 544-549
-
-
Neilsen, C.T.1
-
88
-
-
78149332037
-
Complexity of the microRNA repertoire revealed by next-generation sequencing
-
Lee L.W., et al. Complexity of the microRNA repertoire revealed by next-generation sequencing. RNA 2010, 16:2170-2180.
-
(2010)
RNA
, vol.16
, pp. 2170-2180
-
-
Lee, L.W.1
-
89
-
-
77958471215
-
A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing
-
Martí E., et al. A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing. Nucleic Acids Res. 2010, 38:7219-7235.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7219-7235
-
-
Martí, E.1
-
90
-
-
84873701078
-
A highly expressed miR-101 isomiR is a functional silencing small RNA
-
Llorens F., et al. A highly expressed miR-101 isomiR is a functional silencing small RNA. BMC Genomics 2013, 14:104.
-
(2013)
BMC Genomics
, vol.14
, pp. 104
-
-
Llorens, F.1
-
91
-
-
84899895387
-
A challenge for miRNA: multiple isomiRs in miRNAomics
-
Guo L., Chen F. A challenge for miRNA: multiple isomiRs in miRNAomics. Gene 2014, 544:1-7.
-
(2014)
Gene
, vol.544
, pp. 1-7
-
-
Guo, L.1
Chen, F.2
-
92
-
-
84906283860
-
5' isomiR variation is of functional and evolutionary importance
-
Tan G.C., et al. 5' isomiR variation is of functional and evolutionary importance. Nucleic Acids Res. 2014, 42:9424-9435.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 9424-9435
-
-
Tan, G.C.1
-
93
-
-
84896720225
-
A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species
-
Xia J., Zhang W. A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species. Nucleic Acids Res. 2014, 42:1427-1441.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1427-1441
-
-
Xia, J.1
Zhang, W.2
-
94
-
-
84908156465
-
Conserved microRNA editing in mammalian evolution, development and disease
-
Warnefors M., et al. Conserved microRNA editing in mammalian evolution, development and disease. Genome Biol. 2014, 15:R83.
-
(2014)
Genome Biol.
, vol.15
, pp. R83
-
-
Warnefors, M.1
-
95
-
-
84922344632
-
Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4)
-
Thornton J.E., et al. Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4). Nucleic Acids Res. 2014, 42:11777-11791.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 11777-11791
-
-
Thornton, J.E.1
-
96
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke J., et al. Principles of microRNA-target recognition. PLoS Biol. 2005, 3:e85.
-
(2005)
PLoS Biol.
, vol.3
, pp. e85
-
-
Brennecke, J.1
-
97
-
-
34250805982
-
MicroRNA targeting specificity in mammals: determinants beyond seed pairing
-
Grimson A., et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell 2007, 27:91-105.
-
(2007)
Mol. Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
-
98
-
-
84908572838
-
Structural basis for microRNA targeting
-
Schirle N.T., et al. Structural basis for microRNA targeting. Science 2014, 346:608-613.
-
(2014)
Science
, vol.346
, pp. 608-613
-
-
Schirle, N.T.1
-
99
-
-
48349136544
-
Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites
-
Li N., et al. Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites. Nucleic Acids Res. 2008, 36:4277-4285.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4277-4285
-
-
Li, N.1
-
100
-
-
77957766910
-
Desperately seeking microRNA targets
-
Thomas M., et al. Desperately seeking microRNA targets. Nat. Struct. Mol. Biol. 2010, 17:1169-1174.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1169-1174
-
-
Thomas, M.1
-
101
-
-
84857955708
-
An alternative mode of microRNA target recognition
-
Chi S.W., et al. An alternative mode of microRNA target recognition. Nat. Struct. Mol. Biol. 2012, 19:321-327.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 321-327
-
-
Chi, S.W.1
-
102
-
-
84905862595
-
Argonaute CLIP-seq reveals miRNA targetome diversity across tissue types
-
Clark P.M., et al. Argonaute CLIP-seq reveals miRNA targetome diversity across tissue types. Sci. Rep. 2014, 4:5947.
-
(2014)
Sci. Rep.
, vol.4
, pp. 5947
-
-
Clark, P.M.1
-
103
-
-
80052027711
-
MicroRNA-offset RNAs (moRNAs): by-product spectators or functional players?
-
Bortoluzzi S., et al. MicroRNA-offset RNAs (moRNAs): by-product spectators or functional players?. Trends Mol. Med. 2011, 17:473-474.
-
(2011)
Trends Mol. Med.
, vol.17
, pp. 473-474
-
-
Bortoluzzi, S.1
-
104
-
-
84859294576
-
Characterization and discovery of novel miRNAs and moRNAs in JAK2V617F-mutated SET2 cells
-
Bortoluzzi S., et al. Characterization and discovery of novel miRNAs and moRNAs in JAK2V617F-mutated SET2 cells. Blood 2012, 119:e120-e130.
-
(2012)
Blood
, vol.119
, pp. e120-e130
-
-
Bortoluzzi, S.1
-
105
-
-
84926298645
-
Selective microRNA-offset RNA expression in human embryonic stem cells
-
Asikainen S., et al. Selective microRNA-offset RNA expression in human embryonic stem cells. PLoS ONE 2015, 10:e0116668.
-
(2015)
PLoS ONE
, vol.10
, pp. e0116668
-
-
Asikainen, S.1
-
106
-
-
78650516640
-
Multiple distinct small RNAs originate from the same microRNA precursors
-
Zhang W., et al. Multiple distinct small RNAs originate from the same microRNA precursors. Genome Biol. 2010, 11:R81.
-
(2010)
Genome Biol.
, vol.11
, pp. R81
-
-
Zhang, W.1
-
107
-
-
79551586302
-
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
-
Berezikov E., et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res. 2011, 21:203-215.
-
(2011)
Genome Res.
, vol.21
, pp. 203-215
-
-
Berezikov, E.1
-
108
-
-
77955655048
-
Analysis of rhesus rhadinovirus microRNAs expressed in virus-induced tumors from infected rhesus macaques
-
Umbach J.L., et al. Analysis of rhesus rhadinovirus microRNAs expressed in virus-induced tumors from infected rhesus macaques. Virology 2010, 405:592-599.
-
(2010)
Virology
, vol.405
, pp. 592-599
-
-
Umbach, J.L.1
-
109
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V., et al. A uniform system for microRNA annotation. RNA 2003, 9:277-279.
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
|