메뉴 건너뛰기




Volumn 15, Issue 6, 2015, Pages 1435-1445

PhytoREF: A reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

Author keywords

High throughput sequencing; Metabarcoding; Photosynthesis; Phytoplankton; Plastidial 16S rRNA gene; Protists

Indexed keywords

RIBOSOME DNA; RNA 16S;

EID: 84943587420     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12401     Document Type: Article
Times cited : (145)

References (85)
  • 2
    • 83655192963 scopus 로고    scopus 로고
    • Progress in understanding harmful algal blooms: paradigm shifts and new technologies for research, monitoring, and management
    • Anderson DM, Cembella AD, Hallegraeff GM (2012) Progress in understanding harmful algal blooms: paradigm shifts and new technologies for research, monitoring, and management. Annual Review of Marine Science, 4, 143-176.
    • (2012) Annual Review of Marine Science , vol.4 , pp. 143-176
    • Anderson, D.M.1    Cembella, A.D.2    Hallegraeff, G.M.3
  • 3
    • 84866749260 scopus 로고    scopus 로고
    • The evolution of algae by secondary and tertiary endosymbiosis
    • Archibald J (2012) The evolution of algae by secondary and tertiary endosymbiosis. Advances in Botanical Research, 64, 87-118.
    • (2012) Advances in Botanical Research , vol.64 , pp. 87-118
    • Archibald, J.1
  • 6
    • 84872840566 scopus 로고    scopus 로고
    • Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
    • Bittner L, Gobet A, Audic S et al. (2013) Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Molecular Ecology, 22, 87-101.
    • (2013) Molecular Ecology , vol.22 , pp. 87-101
    • Bittner, L.1    Gobet, A.2    Audic, S.3
  • 8
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) TrimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25, 1972-1973.
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 10
    • 56749151589 scopus 로고    scopus 로고
    • Control of toxic marine dinoflagellate blooms by serial parasitic killers
    • Chambouvet A, Morin P, Marie D, Guillou L (2008) Control of toxic marine dinoflagellate blooms by serial parasitic killers. Science, 322, 1254-1257.
    • (2008) Science , vol.322 , pp. 1254-1257
    • Chambouvet, A.1    Morin, P.2    Marie, D.3    Guillou, L.4
  • 12
    • 13444304367 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
    • Cole JR, Chai B, Farris RJ et al. (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Research, 33, 294-296.
    • (2005) Nucleic Acids Research , vol.33 , pp. 294-296
    • Cole, J.R.1    Chai, B.2    Farris, R.J.3
  • 13
    • 0032855526 scopus 로고    scopus 로고
    • Temporal and spatial coordination of cells with their plastid component
    • Coleman AW, Nerozzi AM (1999) Temporal and spatial coordination of cells with their plastid component. International Review of Cytology, 193, 125-164.
    • (1999) International Review of Cytology , vol.193 , pp. 125-164
    • Coleman, A.W.1    Nerozzi, A.M.2
  • 16
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 72, 5069-5072.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 17
    • 84856091374 scopus 로고    scopus 로고
    • Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta)
    • Edvardsen B, Eikrem W, Throndsen J, Sáez AG, Probert I, Medlin LK (2011) Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). European Journal of Phycology, 46, 202-228.
    • (2011) European Journal of Phycology , vol.46 , pp. 202-228
    • Edvardsen, B.1    Eikrem, W.2    Throndsen, J.3    Sáez, A.G.4    Probert, I.5    Medlin, L.K.6
  • 18
    • 3142664643 scopus 로고    scopus 로고
    • The evolution of modern eukaryotic phytoplankton
    • Falkowski PG, Katz ME, Knoll AH et al. (2004) The evolution of modern eukaryotic phytoplankton. Science, 305, 354-360.
    • (2004) Science , vol.305 , pp. 354-360
    • Falkowski, P.G.1    Katz, M.E.2    Knoll, A.H.3
  • 19
    • 33845436331 scopus 로고    scopus 로고
    • Molecular analysis of photosynthetic picoeukaryote community structure along an Arabian Sea transect
    • Fuller NJ, Tarran GA, Cummings DG et al. (2006a) Molecular analysis of photosynthetic picoeukaryote community structure along an Arabian Sea transect. Limnology and Oceanography, 51, 2502-2514.
    • (2006) Limnology and Oceanography , vol.51 , pp. 2502-2514
    • Fuller, N.J.1    Tarran, G.A.2    Cummings, D.G.3
  • 20
    • 33744958625 scopus 로고    scopus 로고
    • Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids
    • Fuller NJ, Campbell C, Allen DJ et al. (2006b) Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids. Aquatic Microbial Ecology, 43, 79-93.
    • (2006) Aquatic Microbial Ecology , vol.43 , pp. 79-93
    • Fuller, N.J.1    Campbell, C.2    Allen, D.J.3
  • 21
    • 77957292567 scopus 로고    scopus 로고
    • A new cell stage in the haploid-diploid life cycle of the colony-forming haptophyte Phaeocystis antarctica and its ecological implications
    • Gaebler-Schwarz S, Davidson A, Assmy P et al. (2010) A new cell stage in the haploid-diploid life cycle of the colony-forming haptophyte Phaeocystis antarctica and its ecological implications. Journal of Phycology, 46, 1006-1016.
    • (2010) Journal of Phycology , vol.46 , pp. 1006-1016
    • Gaebler-Schwarz, S.1    Davidson, A.2    Assmy, P.3
  • 23
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution, 27, 221-224.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 24
    • 79953234083 scopus 로고    scopus 로고
    • Chloroplast genomes of photosynthetic eukaryotes
    • Green BR (2011) Chloroplast genomes of photosynthetic eukaryotes. The Plant Journal, 66, 34-44.
    • (2011) The Plant Journal , vol.66 , pp. 34-44
    • Green, B.R.1
  • 25
    • 84875623291 scopus 로고    scopus 로고
    • The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
    • Guillou L, Bachar D, Audic S et al. (2013) The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Research, 41, D597-D604.
    • (2013) Nucleic Acids Research , vol.41 , pp. D597-D604
    • Guillou, L.1    Bachar, D.2    Audic, S.3
  • 26
    • 67549126280 scopus 로고    scopus 로고
    • AlgaeBase.
    • World-wide electronic publication, National University of Ireland, Galway. searched on 18 April 2014.
    • Guiry MD, Guiry GM (2014) AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 18 April 2014.
    • (2014)
    • Guiry, M.D.1    Guiry, G.M.2
  • 30
    • 33748923486 scopus 로고    scopus 로고
    • Morphological changes in mitochondrial and chloroplast nucleoids and mitochondria during the Chlamydomonas reinhardtii (Chlorophyceae) cell cycle
    • Hiramatsu T, Nakamura S, Misumi O, Kuroiwa T, Nakamura S (2006) Morphological changes in mitochondrial and chloroplast nucleoids and mitochondria during the Chlamydomonas reinhardtii (Chlorophyceae) cell cycle. Journal of Phycology, 42, 1048-1058.
    • (2006) Journal of Phycology , vol.42 , pp. 1048-1058
    • Hiramatsu, T.1    Nakamura, S.2    Misumi, O.3    Kuroiwa, T.4    Nakamura, S.5
  • 31
    • 16444372009 scopus 로고    scopus 로고
    • Multiple independent losses of photosynthesis in the genus Cryptomonas (Cryptophyceae) - combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons
    • Hoef-Emden K (2005) Multiple independent losses of photosynthesis in the genus Cryptomonas (Cryptophyceae) - combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons. Journal of Molecular Evolution, 60, 183-195.
    • (2005) Journal of Molecular Evolution , vol.60 , pp. 183-195
    • Hoef-Emden, K.1
  • 32
    • 0242625279 scopus 로고    scopus 로고
    • Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism
    • Hoef-Emden K, Melkonian M (2003) Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism. Protist, 154, 371-409.
    • (2003) Protist , vol.154 , pp. 371-409
    • Hoef-Emden, K.1    Melkonian, M.2
  • 33
    • 84863681580 scopus 로고    scopus 로고
    • Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs
    • Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ (2012) Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Current Biology, 22, R518-R519.
    • (2012) Current Biology , vol.22 , pp. R518-R519
    • Janouškovec, J.1    Horák, A.2    Barott, K.L.3    Rohwer, F.L.4    Keeling, P.J.5
  • 34
    • 77956094365 scopus 로고    scopus 로고
    • Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
    • Jardillier L, Zubkov MV, Pearman J, Scanlan DJ (2010) Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. The ISME Journal, 4, 1180-1192.
    • (2010) The ISME Journal , vol.4 , pp. 1180-1192
    • Jardillier, L.1    Zubkov, M.V.2    Pearman, J.3    Scanlan, D.J.4
  • 35
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh M, Misawa K, Kuma M, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3059-3066
    • Katoh, M.1    Misawa, K.2    Kuma, M.3    Miyata, T.4
  • 36
    • 84879420877 scopus 로고    scopus 로고
    • Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
    • Kermarrec L, Franc A, Rimet F, Chaumeil P, Humbert JF, Bouchez A (2013) Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. Molecular Ecology Resources, 13, 607-619.
    • (2013) Molecular Ecology Resources , vol.13 , pp. 607-619
    • Kermarrec, L.1    Franc, A.2    Rimet, F.3    Chaumeil, P.4    Humbert, J.F.5    Bouchez, A.6
  • 38
    • 84855212993 scopus 로고    scopus 로고
    • The marine dinoflagellate genus Dinophysis can retain plastids of multiple algal origins at the same time
    • Kim M, Kim S, Yih W, Park MG (2012) The marine dinoflagellate genus Dinophysis can retain plastids of multiple algal origins at the same time. Harmful Algae, 13, 105-111.
    • (2012) Harmful Algae , vol.13 , pp. 105-111
    • Kim, M.1    Kim, S.2    Yih, W.3    Park, M.G.4
  • 40
    • 84876858004 scopus 로고    scopus 로고
    • A global perspective on marine photosynthetic picoeukaryote community structure
    • Kirkham AR, Lepère C, Jardiller LE et al. (2013) A global perspective on marine photosynthetic picoeukaryote community structure. The ISME Journal, 7, 922-936.
    • (2013) The ISME Journal , vol.7 , pp. 922-936
    • Kirkham, A.R.1    Lepère, C.2    Jardiller, L.E.3
  • 41
    • 84891643388 scopus 로고    scopus 로고
    • Paleobiological perspectives on early eukaryotic evolution
    • Knoll AH (2014) Paleobiological perspectives on early eukaryotic evolution. Cold Spring Harbor Perspectives in Biology, 6, a016121.
    • (2014) Cold Spring Harbor Perspectives in Biology , vol.6 , pp. a016121
    • Knoll, A.H.1
  • 42
    • 33845710553 scopus 로고    scopus 로고
    • The copy number of chloroplast gene minicircles changes dramatically with growth phase in the dinoflagellate Amphidinium operculatum
    • Koumandou VL, Howe CJ (2007) The copy number of chloroplast gene minicircles changes dramatically with growth phase in the dinoflagellate Amphidinium operculatum. Protist, 158, 89-103.
    • (2007) Protist , vol.158 , pp. 89-103
    • Koumandou, V.L.1    Howe, C.J.2
  • 43
    • 70449596504 scopus 로고    scopus 로고
    • Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth
    • Lepère C, Vaulot D, Scanlan DJ (2009) Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth. Environmental Microbiology, 11, 3105-3117.
    • (2009) Environmental Microbiology , vol.11 , pp. 3105-3117
    • Lepère, C.1    Vaulot, D.2    Scanlan, D.J.3
  • 45
    • 77955656416 scopus 로고    scopus 로고
    • Reconstructing euglenoid evolutionary relationships using three genes: nuclear SSU and LSU, and chloroplast SSU rDNA sequences and the description of Euglenaria gen. nov. (Euglenophyta)
    • Linton EW, Karnkowska-Ishikawa A, Kim JI et al. (2010) Reconstructing euglenoid evolutionary relationships using three genes: nuclear SSU and LSU, and chloroplast SSU rDNA sequences and the description of Euglenaria gen. nov. (Euglenophyta). Protist, 161, 603-619.
    • (2010) Protist , vol.161 , pp. 603-619
    • Linton, E.W.1    Karnkowska-Ishikawa, A.2    Kim, J.I.3
  • 46
    • 84867740787 scopus 로고    scopus 로고
    • Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
    • Logares R, Audic S, Santini S, Pernice MC, de Vargas C, Massana, R (2012) Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. The ISME Journal, 6, 1823-1833.
    • (2012) The ISME Journal , vol.6 , pp. 1823-1833
    • Logares, R.1    Audic, S.2    Santini, S.3    Pernice, M.C.4    de Vargas, C.5    Massana, R.6
  • 47
    • 84898791782 scopus 로고    scopus 로고
    • Patterns of rare and abundant marine microbial eukaryotes
    • Logares R, Audic S, Bass D et al. (2014) Patterns of rare and abundant marine microbial eukaryotes. Current Biology, 24, 813-821.
    • (2014) Current Biology , vol.24 , pp. 813-821
    • Logares, R.1    Audic, S.2    Bass, D.3
  • 49
    • 77954830502 scopus 로고    scopus 로고
    • Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts
    • Man-Aharonovich D, Philosof A, Kirkup BC et al. (2010) Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. The ISME Journal, 4, 1044-1052.
    • (2010) The ISME Journal , vol.4 , pp. 1044-1052
    • Man-Aharonovich, D.1    Philosof, A.2    Kirkup, B.C.3
  • 50
    • 38549141601 scopus 로고    scopus 로고
    • Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle
    • McDonald SM, Sarno D, Scanlan DJ, Zingone A (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, 50, 75-89.
    • (2007) Aquatic Microbial Ecology , vol.50 , pp. 75-89
    • McDonald, S.M.1    Sarno, D.2    Scanlan, D.J.3    Zingone, A.4
  • 51
    • 84920454061 scopus 로고    scopus 로고
    • Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans
    • McKie-Krisberg ZM, Sanders RW (2014) Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans. The ISME Journal, 8, 1953-1961.
    • (2014) The ISME Journal , vol.8 , pp. 1953-1961
    • McKie-Krisberg, Z.M.1    Sanders, R.W.2
  • 52
    • 38949191088 scopus 로고    scopus 로고
    • Phases, stages, and shifts in the life cycles of marine phytoplankton
    • (ed. Subba Rao D). Science Publishers, Enfield, USA.
    • Montresor M, Lewis J (2006) Phases, stages, and shifts in the life cycles of marine phytoplankton. In: Algal Cultures, Analogues of Blooms and Applications (ed. Subba Rao D), pp. 91-129. Science Publishers, Enfield, USA.
    • (2006) Algal Cultures, Analogues of Blooms and Applications , pp. 91-129
    • Montresor, M.1    Lewis, J.2
  • 53
    • 39749142234 scopus 로고    scopus 로고
    • A photosynthetic alveolate closely related to apicomplexan parasites
    • Moore RB, Oborník M, Janouškovec J et al. (2008) A photosynthetic alveolate closely related to apicomplexan parasites. Nature, 451, 959-963.
    • (2008) Nature , vol.451 , pp. 959-963
    • Moore, R.B.1    Oborník, M.2    Janouškovec, J.3
  • 55
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 57
    • 84856233652 scopus 로고    scopus 로고
    • Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef
    • Oborník M, Modry D, Lukeš M et al. (2012) Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist, 163, 306-323.
    • (2012) Protist , vol.163 , pp. 306-323
    • Oborník, M.1    Modry, D.2    Lukeš, M.3
  • 58
    • 9344270525 scopus 로고    scopus 로고
    • Changes in the structure of DNA molecules and the amount of DNA per plastid during chloroplast development in maize
    • Oldenburg DJ, Bendich AJ (2004) Changes in the structure of DNA molecules and the amount of DNA per plastid during chloroplast development in maize. Journal of Molecular Biology, 344, 1311-1330.
    • (2004) Journal of Molecular Biology , vol.344 , pp. 1311-1330
    • Oldenburg, D.J.1    Bendich, A.J.2
  • 59
    • 0034608549 scopus 로고    scopus 로고
    • Micro- and macrodiversity in rbcL sequences in ambient phytoplankton populations from the southeastern Gulf of Mexico
    • Paul JH, Alfreider A, Wawrik B (2000) Micro- and macrodiversity in rbcL sequences in ambient phytoplankton populations from the southeastern Gulf of Mexico. Marine Ecology Progress Series, 198, 9-18.
    • (2000) Marine Ecology Progress Series , vol.198 , pp. 9-18
    • Paul, J.H.1    Alfreider, A.2    Wawrik, B.3
  • 60
    • 84870260174 scopus 로고    scopus 로고
    • CBOL Protist Working Group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms
    • Pawlowski J, Audic S, Adl S et al. (2012) CBOL Protist Working Group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biology, 10, e1001419.
    • (2012) PLoS Biology , vol.10 , pp. e1001419
    • Pawlowski, J.1    Audic, S.2    Adl, S.3
  • 61
    • 84907953277 scopus 로고    scopus 로고
    • Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities
    • Pawlowski J, Esling P, Lejzerowicz F, Cedhagen T, Wilding TA (2014) Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities. Molecular Ecology Resources, 14, 1129-1140.
    • (2014) Molecular Ecology Resources , vol.14 , pp. 1129-1140
    • Pawlowski, J.1    Esling, P.2    Lejzerowicz, F.3    Cedhagen, T.4    Wilding, T.A.5
  • 62
    • 79958005261 scopus 로고    scopus 로고
    • Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in Foraminifera
    • Pillet L, De Vargas C, Pawlowski J (2011) Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in Foraminifera. Protist, 162, 394-404.
    • (2011) Protist , vol.162 , pp. 394-404
    • Pillet, L.1    De Vargas, C.2    Pawlowski, J.3
  • 63
    • 84890230480 scopus 로고    scopus 로고
    • A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes
    • Piñol J, San Andrés V, Clare EL, Mir G, Symondson WOC (2014) A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes. Molecular Ecology Resources, 14, 18-26.
    • (2014) Molecular Ecology Resources , vol.14 , pp. 18-26
    • Piñol, J.1    San Andrés, V.2    Clare, E.L.3    Mir, G.4    Symondson, W.O.C.5
  • 65
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2 - Approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP (2010) FastTree 2 - Approximately maximum-likelihood trees for large alignments. PLoS ONE, 5, e9490.
    • (2010) PLoS ONE , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 66
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research, 35, 7188-7196.
    • (2007) Nucleic Acids Research , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3
  • 67
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41, D590-D596.
    • (2013) Nucleic Acids Research , vol.41 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3
  • 68
    • 33846952098 scopus 로고    scopus 로고
    • Small phytoplankton and carbon export from the surface ocean
    • Richardson TL, Jackson GA (2007) Small phytoplankton and carbon export from the surface ocean. Science, 315, 838-840.
    • (2007) Science , vol.315 , pp. 838-840
    • Richardson, T.L.1    Jackson, G.A.2
  • 69
    • 79955741310 scopus 로고    scopus 로고
    • Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean
    • Shi XL, Lepère C, Scanlan DJ, Vaulot D (2011) Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PLoS ONE, 6, e18979.
    • (2011) PLoS ONE , vol.6 , pp. e18979
    • Shi, X.L.1    Lepère, C.2    Scanlan, D.J.3    Vaulot, D.4
  • 70
    • 84875792994 scopus 로고    scopus 로고
    • The parasitic dinoflagellates Blastodinium spp. inhabiting the gut of marine, planktonic copepods: morphology, ecology and unrecognized species diversity
    • Skovgaard A, Karpov SA, Guillou L (2012) The parasitic dinoflagellates Blastodinium spp. inhabiting the gut of marine, planktonic copepods: morphology, ecology and unrecognized species diversity. Frontiers in Microbiology, 3, 305.
    • (2012) Frontiers in Microbiology , vol.3 , pp. 305
    • Skovgaard, A.1    Karpov, S.A.2    Guillou, L.3
  • 71
    • 84908396528 scopus 로고    scopus 로고
    • Diversity and plastid types in Dinophysis acuminata complex (Dinophyceae) in Scottish waters
    • Stern RF, Amorim AL, Bresnan E (2014) Diversity and plastid types in Dinophysis acuminata complex (Dinophyceae) in Scottish waters. Harmful Algae, 39, 223-231.
    • (2014) Harmful Algae , vol.39 , pp. 223-231
    • Stern, R.F.1    Amorim, A.L.2    Bresnan, E.3
  • 72
    • 77951908579 scopus 로고    scopus 로고
    • Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
    • Stoeck T, Bass D, Nebel M et al. (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology, 19, 21-31.
    • (2010) Molecular Ecology , vol.19 , pp. 21-31
    • Stoeck, T.1    Bass, D.2    Nebel, M.3
  • 74
    • 84891163637 scopus 로고    scopus 로고
    • Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters
    • Unrein F, Gasol JM, Not F, Forn I, Massana R (2014) Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters. The ISME Journal, 8, 164-176.
    • (2014) The ISME Journal , vol.8 , pp. 164-176
    • Unrein, F.1    Gasol, J.M.2    Not, F.3    Forn, I.4    Massana, R.5
  • 75
    • 0024728767 scopus 로고
    • A simple method to preserve oceanic phytoplankton for flow cytometric analyses
    • Vaulot D, Courties C, Partensky, F (1989) A simple method to preserve oceanic phytoplankton for flow cytometric analyses. Cytometry, 10, 629-635.
    • (1989) Cytometry , vol.10 , pp. 629-635
    • Vaulot, D.1    Courties, C.2    Partensky, F.3
  • 76
    • 0036603651 scopus 로고    scopus 로고
    • Are autotrophs less diverse than heterotrophs in marine picoplankton?
    • Vaulot D, Romari K, Not F (2002) Are autotrophs less diverse than heterotrophs in marine picoplankton? Trends in Microbiology, 10, 266-267.
    • (2002) Trends in Microbiology , vol.10 , pp. 266-267
    • Vaulot, D.1    Romari, K.2    Not, F.3
  • 77
    • 49649093132 scopus 로고    scopus 로고
    • The diversity of small eukaryotic phytoplankton (≤3 μm) in marine ecosystems
    • Vaulot D, Eikrem W, Viprey M, Moreau H (2008) The diversity of small eukaryotic phytoplankton (≤3 μm) in marine ecosystems. FEMS Microbiology Reviews, 32, 795-820.
    • (2008) FEMS Microbiology Reviews , vol.32 , pp. 795-820
    • Vaulot, D.1    Eikrem, W.2    Viprey, M.3    Moreau, H.4
  • 78
    • 0034916894 scopus 로고    scopus 로고
    • Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA- targeted oligonucleotides
    • West NJ, Schönhuber WA, Fuller NJ et al. (2001) Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA- targeted oligonucleotides. Microbiology, 147, 1731-1744.
    • (2001) Microbiology , vol.147 , pp. 1731-1744
    • West, N.J.1    Schönhuber, W.A.2    Fuller, N.J.3
  • 80
    • 0742319983 scopus 로고    scopus 로고
    • Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component
    • Worden AZ, Nolan JK, Palenik B (2004) Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component. Limnology and Oceanography, 49, 168-179.
    • (2004) Limnology and Oceanography , vol.49 , pp. 168-179
    • Worden, A.Z.1    Nolan, J.K.2    Palenik, B.3
  • 81
    • 0037346852 scopus 로고    scopus 로고
    • Molecular diversity among marine picophytoplankton as revealed by psbA analyses
    • Zeidner G, Preston CM, DeLong EF et al. (2003) Molecular diversity among marine picophytoplankton as revealed by psbA analyses. Environmental Microbiology, 5, 212-216.
    • (2003) Environmental Microbiology , vol.5 , pp. 212-216
    • Zeidner, G.1    Preston, C.M.2    DeLong, E.F.3
  • 82
    • 0036215266 scopus 로고    scopus 로고
    • Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins
    • Zhang Z, Cavalier-Smith T, Green VR (2002) Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins. Molecular Biology and Evolution, 19, 489-500.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 489-500
    • Zhang, Z.1    Cavalier-Smith, T.2    Green, V.R.3
  • 83
    • 13844317082 scopus 로고    scopus 로고
    • Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    • Zhu F, Massana R, Not F, Marie D, Vaulot D (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiology Ecology, 52, 79-92.
    • (2005) FEMS Microbiology Ecology , vol.52 , pp. 79-92
    • Zhu, F.1    Massana, R.2    Not, F.3    Marie, D.4    Vaulot, D.5
  • 84
    • 13944269285 scopus 로고    scopus 로고
    • Harmful algal blooms: keys to the understanding of the phytoplankton ecology
    • (eds Robinson AR, Brink KH). Harvard University Press, Harvard.
    • Zingone A, Wyatt T (2005) Harmful algal blooms: keys to the understanding of the phytoplankton ecology. In: The Sea (eds Robinson AR, Brink KH), pp. 867-926. Harvard University Press, Harvard.
    • (2005) The Sea , pp. 867-926
    • Zingone, A.1    Wyatt, T.2
  • 85
    • 51649123143 scopus 로고    scopus 로고
    • High bacterivory by the smallest phytoplankton in the North Atlantic Ocean
    • Zubkov MV, Tarran GA (2008) High bacterivory by the smallest phytoplankton in the North Atlantic Ocean. Nature, 455, 224-226.
    • (2008) Nature , vol.455 , pp. 224-226
    • Zubkov, M.V.1    Tarran, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.