Diversity and plastid types in Dinophysis acuminata complex (Dinophyceae) in Scottish waters

Harmful Algae

Volumn 39, Issue , 2014, Pages 223-231

  Stern, R F ^a   Amorim, A L ^b   Bresnan, E ^b  

^a THE LABORATORY   (United Kingdom)

^b MARINE LABORATORY   (United Kingdom)

Author keywords

COI; Cryptophyte; Dinophysis; ITS; Molecular identification; Plastid

Indexed keywords

CRYPTOPHYTA; DINOPHYCEAE; DINOPHYSIS; DINOPHYSIS ACUMINATA;

EID: 84908396528     PISSN: 15689883     EISSN: 18781470     Source Type: Journal    
DOI: 10.1016/j.hal.2014.07.013     Document Type: Article

References (57)

1. Balech E. Some Norwegian Dinophysis species (Dinoflagellata). Sarsia 1976, 61:75-94.
2. Balech E. Los Dinoflagelados del Atlantico Sudoccidental. Publ. Espec. Inst. Esp. Oceanogr. 1988, 1-310. P. Minesterio de Agricultura (Ed.).
3. Campbell L., Olson R.J., Sosik H.M., Abraham A., Henrichs D.W., Hyatt C.J., Buskey E.J. First harmful Dinophysis (Dinophyceae, Dinophysiales) bloom in the U.S. is revealed by automated imaging flow cytometry. J. Phycol. 2010, 46(1):66-75.
4. Carvalho W.F., Minnhagen S., Granéli E. Dinophysis norvegica (Dinophyceae), more a predator than a producer?. Harmful Algae 2008, 7:174-183.
5. Daranas A.H., Norte M., Fernández J.J. Toxic marine microalgae. Toxicon 2001, 39:1101-1132.
6. Edvardsen B., Shalchian-Tabrizi K., Jakobsen K.S., Medlin L., Dahl E., Brubak S., Paasche E. Genetic variability and molecular phylogeny of Dinophysis species (Dinophyceae) from Norwegian waters inferred from single cell analyses of rDNA. J. Phycol. 2003, 39:395-408.
7. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
8. Garcia-Cuetos L., Moestrup Ø., Hansen P.J., Daugbjerg N. The toxic dinoflagellate Dinophysis acuminata harbors permanent chloroplasts of cryptomonad origin, not kleptochloroplasts. Harmful Algae 2010, 9:25-38.
9. Gomez F., Lopez-Garcia P., Moreira D. Molecular phylogeny of Dinophysoid dinoflagellates. The systematic position of Oxyphysis oxytoxoides and the Dinophysis hastata group (Dinophysales, Dinophyceae). J. Phycol. 2011, 47:393-406.
10. Hackett J.D., Maranda L., Yoon H.S., Bhattacharya D. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J. Phycol. 2003, 39(2):440-448.
11. Hallegraeff G.M., Lucas I.A.N. The marine dinoflagellate genus Dinophysis (Dinophyceae): photosynthetic, neritic and non-photosynthetic, oceanic species. Phycologia 1988, 27:25-42.
12. Hart M.C., Green D.H., Bresnan E., Bolch C.J. Large subunit ribosomal RNA gene variation and sequence heterogeneity of Dinophysis (Dinophyceae) species from Scottish coastal waters. Harmful Algae 2007, 6:271-287.
13. Hebert P.D., Ratnasingham S., deWaard J.R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. Biol. Sci. 2003, 270(Suppl. 1):S96-S99.
14. Hoef-Emden K., Marin B., Melkonian M. Nuclear and nucleomorph SSU rDNA phylogeny in the cryptophyta and the evolution of cryptophyte diversity. J. Mol. Evol. 2002, 55(2):161-179.
15. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17(8):754-755.
16. Kim M., Kim S., Yi W., Park M.G. The marine dinoflagellate genus Dinophysis can retain plastids of multiple algal origins at the same time. Harmful Algae 2012, 13:105-111.
17. Kim M., Nam S.W., Shin W., Coats D.W., Park M.G. Dinophysis caudata (Dinophyceae) sequesters and retains plastids from the mixotrophic ciliate prey Mesodinium rubrum. J. Phycol. 2012, 48:569-579.
18. Lanave C., Preparata G., Saccone C., Serio G. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 1984, 20(1):86-93.
19. Larsen J., Moestrup Ø. Potentially toxic phytoplankton. 2. Genus Dinophysis (Dinophyceae). ICES Identification Leaflets for Plankton 1992, 12. International Council for the Exploration of the Sea, Copenhagen. U. Copenhagen (Ed.).
20. Lee J.S., Igarashi T., Fraga F., Dahl E., Hovgaard P., Yasumoto T., Oshima Y., Fukuyo Y. Determination of diarrhetic shellfish toxins in various dinoflagellate species. J. Appl. Phycol. 1989, 1:147-152.
21. Lin S., Zhang H., Hou Y., Zhuang Y., Miranda L. High-level diversity of dinoflagellates in the natural environment, revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding. Appl. Environ. Microbiol. 2009, 75(5):1279-1290.
22. Lindegarth S., Norin E., Cervin G. Analys av fettlösliga algtoxiner i plankton och musslor med LC-MS/MS metodik 2007, Institutionen för Marin Ekologi, Göteborgs.
23. Litaker R.W., Vandersea M.W., Kibler S.R. Recognising dinoflagellate species using ITS rDNA sequences. J. Phycol. 2007, 43:344-355.
24. López-García P., Rodríguez-Valera F., Pedrós-Alió C., Moreira D. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 2001, 409(6820):603-607.
25. Marin B., Klingberg M., Melkonian M. Phylogenetic relationships among the Cryptophyta: analyses of nuclear-encoded SSU rRNA sequences support the monophyly of extant plastid-containing lineages. Protist 1998, 149:265-276.
26. Miles C.O., Wilkins A.L., Samdal I.A., Sandvik M., Petersen D., Quilliam M.A., Naustvoll L.J., Rundberget T., Torgersen T., Hovgaard P., Jensen D.J., Cooney J.M. A novel pectenotoxin, PTX-12, in Dinophysis Spp. and shellfish from Norway. Chem. Res. Toxicol. 2004, 17(11):1423-1433.
27. Minnhagen S., Janson S. Genetic analyses of Dinophysis spp. support kleptoplastidy. FEMS Microbiol. Ecol. 2006, 57:47-54.
28. Nei M.K.S. Molecular Evolution and Phylogenetics 2000, Oxford University Press, New York, USA.
29. Nishitani G., Nagai S., Baba K., Kiyokawa S., Kosaka Y., Miyamura K., Nishikawa T., Sakurada K., Shinada A., Kamikawa T. High-level congruence of Myrionecta rubra Prey and Dinophysis species plastid identities as revealed by genetic analyses of isolates from Japanese coastal waters. Appl. Environ. Microbiol. 2010, 76(9):2791-2798.
30. Nishitani G., Nagai S., Hayakawa S., Kosaka Y., Sakurada K., Kamiyama T., Gojobori T. Multiple plastids collected by the Dinoflagellate Dinophysis mitra through kleptoplastidy. Appl. Environ. Microbiol. 2012, 78(3):813-821.
31. Nishitani G., Yamaguchi M., Ishikawa A., Yanagiya S., Mitsuya T., Imai I. Relationships between occurrences of toxic Dinophysis species (Dinophyceae) and small phytoplanktons in Japanese coastal waters. Harmful Algae 2005, 4:755-762.
32. Papaefthimiou D., Aligizaki K., Nikolaidis G. Exploring the identity of the Greek Dinophysis cf. acuminata. Harmful Algae 2010, 10:1-8.
33. Park M.G., Kim S., Kim H.S., Myung G., Kang Y.G., Yih W. First successful culture of the marine dinoflagellate Dinophysis acuminata. Aquat. Microb. Ecol. 2006, 45:101-106.
34. Penna A., Bertozzini E., Battocchi C., Galluzzi L., Grazia Giacobbe M., Vila M., Garces E., Luglie A., Magnani M. Monitoring of HAB species in the Mediterranean Sea through molecular methods. J. Plankton Res. 2007, 29(1):19-38.
35. Qiu D., Huang L., Liu S., Lin S. Nuclear, mitochondrial and plastid gene phylogenies of Dinophysis miles (Dinophyceae): evidence of variable types of chloroplasts. PLoS ONE 2011, 6(12):e29398.
36. Quilliam M.A., Wright J.L. Methods for diarrhetic shellfish poisons. Manual on Harmful Marine Microalgae. IOC Manuals and Guides 1995, vol. 33:95-111. UNESCO.
37. Raho N., Pizarro G., Escalera L., Reguera B., Marin I. Morphology, toxin composition and molecular analysis of Dinophysis ovum Schutt, a dinoflagellate of the "Dinophysis acuminata complex". Harmful Algae 2008, 7:839-848.
38. Raho N., Rodríguez F., Reguera B., Marín I. Are the mitochondrial cox1 and cob genes suitable markers for species of Dinophysis Ehrenberg?. Harmful Algae 2013, 28:64-70.
39. Reguera B., Gonzalez-Gil S. Small cell and intermediate cell formation in species of Dinophysis (Dinophyceae, Dinophsiales). J. Phycol. 2001, 37(2):318-333.
40. Reguera B.V.-S.L., Raine R., Park M.G. Harmful Dinophysis species: a review. Harmful Algae 2012, 14:87-106.
41. Rodriguez F., Oliver J.L., Marin A., Medina J.R. The general stochastic model of nucleotide substitution. J. Theor. Biol. 1990, 142:485-501.
42. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
43. Schnepf E., Elbrächter M. Cryptophycean-like double membrane-bound chloroplast in the dinoflagellate, Dinophysis Ehrenb.: evolutionary, phylogenetic and toxicological implications. Bot. Acta 1988, 101:196-203.
44. Smayda T.J. Harmful Algal Bloom Communities in Scottish Coastal Waters: Relationship to Fish Farming and Regional Comparisons - A Review 2004, 40-47. University of Rhode Island, Kingston.
45. Steidinger K.A., Tangen K. Dinoflagellates. Identifying Marine Phytoplankton 1997, 387-584. Academic Press, San Diego, CA, USA. C.R. Tomas (Ed.).
46. Stern R., Horak A., Andrew R., Andersen R.A., Kuepper F., Coffroth M.A., Jameson I., Hoppenrath M., Veron B., Kasai F., Keeling P. Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS ONE 2010, 5(11):e13991.
47. Stern R.F., Andersen R.A., Jameson I., Küpper F.C., Coffroth M.A., Vaulot D., Le Gall F., Véron B., Brand J.J., Skelton H., Kasai F., Lilly E.L., Keeling P.J. Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker. PLoS ONE 2012, 7(8):e42780.
48. Stobo L.A., Lacaze J.-P.C.L., Scott A.C., Petrie J., Turrell E.A. Surveillance of algal toxins in shellfish from shellfish waters. Toxicon 2008, 51:635-648.
49. Tachibana K., Scheuer P.J., Tsukitani Y., Kikuchi H., Van Eugen D., Clardy J., Gopichand Y., Schmitz F.J. Okadaic acid, a cytotoxic polyether toxin from two marine sponges of the genus Halichondria. J. Am. Chem. Soc. 1981, 103:2469-2471.
50. Takahashi Y., Takishita K., Koike K., Maruyama T., Nakayama T., Kobiyama A., Ogata T. Development of molecular probes for Dinophysis (Dinophyceae) plastid: a tool to predict blooming and explore plastid origin. Mar. Biotechnol. 2005, 7(2):95-103.
51. Takishita K., Koike K., Maruyama T., Ogata T. Molecular evidence for plastid robbery (Kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning. Protist 2002, 153:293-302.
52. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood. Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology Evolution 2011, 28:2731-2739.
53. Throndsen J. Preservation and storage. Phytoplankton Manual 1978, 69-74. UNESCO, Paris, France. A. Sournia (Ed.).
54. Yang Z., Rannala B. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Mol Biol Evol 1997, 14(7):717-724.
55. Yasumoto T., Oshima Y., Sugawara W., Fukuyo Y., Oguri H., Igarashi T., Fujita N. Identification of Dinophysis fortii as the causative organism of diarrhetic shellfish poisoning. Bull. Jpn. Soc. Sci. Fish. 1980, 46:1405-1411.
56. Zhang H., Bhattacharya D., Lin S. A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for Amphidinium and Heterocapsa. J. Mol. Evol. 2007, 65(4):463-474.
57. Zhang H., Bhattacharya D., Maranda L., Lin S. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Appl. Environ. Microbiol. 2008, 74(5):1546-1554.