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Volumn 6, Issue 4, 2011, Pages

Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; DNA; PHENYLALANINE; RNA 16S; RNA 18S; PRIMER DNA;

EID: 79955741310     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0018979     Document Type: Article
Times cited : (71)

References (37)
  • 1
    • 0028163796 scopus 로고
    • Primary productivity of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting
    • Li WKW, (1994) Primary productivity of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnology and Oceanography 39: 169-175.
    • (1994) Limnology and Oceanography , vol.39 , pp. 169-175
    • Li, W.K.W.1
  • 2
    • 77956094365 scopus 로고    scopus 로고
    • Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
    • Jardillier L, Zubkov MV, Pearman J, Scanlan DJ, (2010) Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME Journal 4: 1180-1192.
    • (2010) ISME Journal , vol.4 , pp. 1180-1192
    • Jardillier, L.1    Zubkov, M.V.2    Pearman, J.3    Scanlan, D.J.4
  • 4
    • 0035252640 scopus 로고    scopus 로고
    • Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
    • Lopez-Garcia P, Rodriguez-Valera F, Pedros-Alio C, Moreira D, (2001) Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 409: 603-607.
    • (2001) Nature , vol.409 , pp. 603-607
    • Lopez-Garcia, P.1    Rodriguez-Valera, F.2    Pedros-Alio, C.3    Moreira, D.4
  • 5
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • Moon-van der Staay SY, De Wachter R, Vaulot D, (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607-610.
    • (2001) Nature , vol.409 , pp. 607-610
    • Moon-van der Staay, S.Y.1    de Wachter, R.2    Vaulot, D.3
  • 6
    • 2942562373 scopus 로고    scopus 로고
    • Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences
    • Romari K, Vaulot D, (2004) Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences. Limnology and Oceanography 49: 784-798.
    • (2004) Limnology and Oceanography , vol.49 , pp. 784-798
    • Romari, K.1    Vaulot, D.2
  • 7
    • 49649093132 scopus 로고    scopus 로고
    • The diversity of small eukaryotic phytoplankton (≤3 μm) in marine ecosystems
    • Vaulot D, Eikrem W, Viprey M, Moreau H, (2008) The diversity of small eukaryotic phytoplankton (≤3 μm) in marine ecosystems. FEMS Microbiology Reviews 32: 795-820.
    • (2008) FEMS Microbiology Reviews , vol.32 , pp. 795-820
    • Vaulot, D.1    Eikrem, W.2    Viprey, M.3    Moreau, H.4
  • 8
    • 33744958625 scopus 로고    scopus 로고
    • Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using the PCR biased towards marine algal plastids
    • Fuller NJ, Campbell C, Allen DJ, Pitt FD, Le Gall F, et al. (2006) Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using the PCR biased towards marine algal plastids. Aquatic Microbial Ecology 43: 79-93.
    • (2006) Aquatic Microbial Ecology , vol.43 , pp. 79-93
    • Fuller, N.J.1    Campbell, C.2    Allen, D.J.3    Pitt, F.D.4    Le Gall, F.5
  • 9
    • 70449596504 scopus 로고    scopus 로고
    • Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on earth
    • Lepère C, Vaulot D, Scanlan DJ, (2009) Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on earth. Environmental Microbiology 11: 3105-3117.
    • (2009) Environmental Microbiology , vol.11 , pp. 3105-3117
    • Lepère, C.1    Vaulot, D.2    Scanlan, D.J.3
  • 10
    • 77954830502 scopus 로고    scopus 로고
    • Diversity of active marine picoeukaryotes in the eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts
    • Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, et al. (2010) Diversity of active marine picoeukaryotes in the eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME Journal 4: 1044-1052.
    • (2010) ISME Journal , vol.4 , pp. 1044-1052
    • Man-Aharonovich, D.1    Philosof, A.2    Kirkup, B.C.3    Le Gall, F.4    Yogev, T.5
  • 11
    • 44849104595 scopus 로고    scopus 로고
    • Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach
    • Viprey M, Guillou L, Ferreol M, Vaulot D, (2008) Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach. Environmental Microbiology 10: 1804-1822.
    • (2008) Environmental Microbiology , vol.10 , pp. 1804-1822
    • Viprey, M.1    Guillou, L.2    Ferreol, M.3    Vaulot, D.4
  • 12
    • 70449589699 scopus 로고    scopus 로고
    • Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean
    • Shi XL, Marie D, Jardillier L, Scanlan DJ, Vaulot D, (2009) Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS ONE 4: e7657.
    • (2009) PLoS ONE , vol.4
    • Shi, X.L.1    Marie, D.2    Jardillier, L.3    Scanlan, D.J.4    Vaulot, D.5
  • 13
    • 77950642291 scopus 로고    scopus 로고
    • Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel
    • Marie D, Shi XL, Rigaut-Jalabert F, Vaulot D, (2010) Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel. FEMS Microbiology Ecology 72: 165-178.
    • (2010) FEMS Microbiology Ecology , vol.72 , pp. 165-178
    • Marie, D.1    Shi, X.L.2    Rigaut-Jalabert, F.3    Vaulot, D.4
  • 14
    • 43449091595 scopus 로고    scopus 로고
    • Introduction to the special section bio-optical and biogeochemical conditions in the South East Pacific in late 2004: the BIOSOPE program
    • Claustre H, Sciandra A, Vaulot D, (2008) Introduction to the special section bio-optical and biogeochemical conditions in the South East Pacific in late 2004: the BIOSOPE program. Biogeosciences 5: 679-691.
    • (2008) Biogeosciences , vol.5 , pp. 679-691
    • Claustre, H.1    Sciandra, A.2    Vaulot, D.3
  • 15
    • 0033012306 scopus 로고    scopus 로고
    • Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
    • West NJ, Scanlan DJ, (1999) Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Applied and Environmental Microbiology 65: 2585-2591.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 2585-2591
    • West, N.J.1    Scanlan, D.J.2
  • 16
    • 0034916894 scopus 로고    scopus 로고
    • Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
    • West NJ, Schonhuber WA, Fuller NJ, Amann RI, Rippka R, et al. (2001) Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology-SGM 147: 1731-1744.
    • (2001) Microbiology-SGM , vol.147 , pp. 1731-1744
    • West, N.J.1    Schonhuber, W.A.2    Fuller, N.J.3    Amann, R.I.4    Rippka, R.5
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • In: Stackebrandt E, Goodfellow M, editors, New York, N.Y., John Wiley and Sons
    • Lane DJ, (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic Acid Techniques in Bacterial Systematics New York, N.Y. John Wiley and Sons pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 18
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T, (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059-3066.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 19
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 20
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 22
    • 38549141601 scopus 로고    scopus 로고
    • Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle
    • McDonald SM, Sarno D, Scanlan DJ, Zingone A, (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology 50: 75-89.
    • (2007) Aquatic Microbial Ecology , vol.50 , pp. 75-89
    • McDonald, S.M.1    Sarno, D.2    Scanlan, D.J.3    Zingone, A.4
  • 23
    • 0033103941 scopus 로고    scopus 로고
    • Phylogenetic analysis of the SSU rRNA from members of the Chrysophyceae
    • Andersen RA, Van de Peer Y, Potter D, Sexton JP, Kawachi M, et al. (1999) Phylogenetic analysis of the SSU rRNA from members of the Chrysophyceae. Protist 150: 71-84.
    • (1999) Protist , vol.150 , pp. 71-84
    • Andersen, R.A.1    van de Peer, Y.2    Potter, D.3    Sexton, J.P.4    Kawachi, M.5
  • 24
    • 33745409983 scopus 로고    scopus 로고
    • Phylogenetic affinities of an enigmatic nannoplankton, Braarudosphaera bigelowii based on the SSU rDNA sequences
    • Takano Y, Hagino K, Tanaka Y, Horiguchi T, Okada H, (2006) Phylogenetic affinities of an enigmatic nannoplankton, Braarudosphaera bigelowii based on the SSU rDNA sequences. Marine Micropaleontology 60: 145-156.
    • (2006) Marine Micropaleontology , vol.60 , pp. 145-156
    • Takano, Y.1    Hagino, K.2    Tanaka, Y.3    Horiguchi, T.4    Okada, H.5
  • 25
    • 77249178136 scopus 로고    scopus 로고
    • Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons
    • Marin B, Melkonian M, (2010) Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist 161: 304-336.
    • (2010) Protist , vol.161 , pp. 304-336
    • Marin, B.1    Melkonian, M.2
  • 26
    • 34247098019 scopus 로고    scopus 로고
    • Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
    • Sipos R, Szekely AJ, Palatinszky M, Revesz S, Marialigeti K, et al. (2007) Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis. FEMS Microbiology Ecology 60: 341-350.
    • (2007) FEMS Microbiology Ecology , vol.60 , pp. 341-350
    • Sipos, R.1    Szekely, A.J.2    Palatinszky, M.3    Revesz, S.4    Marialigeti, K.5
  • 27
    • 0026610358 scopus 로고
    • Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation
    • Urbach E, Robertson DL, Chisholm SW, (1992) Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation. Nature 355: 267-269.
    • (1992) Nature , vol.355 , pp. 267-269
    • Urbach, E.1    Robertson, D.L.2    Chisholm, S.W.3
  • 28
    • 50049102061 scopus 로고    scopus 로고
    • Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples
    • Junier P, Kim OS, Hadas O, Imhoff JF, Witzel KP, (2008) Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples. Applied and Environmental Microbiology 74: 5231-5236.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 5231-5236
    • Junier, P.1    Kim, O.S.2    Hadas, O.3    Imhoff, J.F.4    Witzel, K.P.5
  • 31
    • 13844317082 scopus 로고    scopus 로고
    • Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    • Zhu F, Massana R, Not F, Marie D, Vaulot D, (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiology Ecology 52: 79-92.
    • (2005) FEMS Microbiology Ecology , vol.52 , pp. 79-92
    • Zhu, F.1    Massana, R.2    Not, F.3    Marie, D.4    Vaulot, D.5
  • 32
    • 0029189130 scopus 로고
    • In situ plastid and mitochondrial DNA determination: Implication of the observed minimal plastid genome number
    • Maguire MJ, Goff LJ, Coleman AW, (1995) In situ plastid and mitochondrial DNA determination: Implication of the observed minimal plastid genome number. American Journal of Botany 82: 1496-1506.
    • (1995) American Journal of Botany , vol.82 , pp. 1496-1506
    • Maguire, M.J.1    Goff, L.J.2    Coleman, A.W.3
  • 33
    • 0033958038 scopus 로고    scopus 로고
    • Abundance and diversity of prymnesiophytes in the picoplankton community from the equatorial Pacific Ocean inferred from 18S rDNA sequences
    • Moon-van der Staay SY, van der Staay GWM, Guillou L, Vaulot D, Claustre H, et al. (2000) Abundance and diversity of prymnesiophytes in the picoplankton community from the equatorial Pacific Ocean inferred from 18S rDNA sequences. Limnology and Oceanography 45: 98-109.
    • (2000) Limnology and Oceanography , vol.45 , pp. 98-109
    • Moon-van der Staay, S.Y.1    van der Staay, G.W.M.2    Guillou, L.3    Vaulot, D.4    Claustre, H.5
  • 34
    • 0027130098 scopus 로고
    • Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. and sp. nov. and the description of a new algal class, the Pelagophyceae classis nov
    • Andersen RA, Saunders GW, Paskind MP, Sexton J, (1993) Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. and sp. nov. and the description of a new algal class, the Pelagophyceae classis nov. Journal of Phycology 29: 701-715.
    • (1993) Journal of Phycology , vol.29 , pp. 701-715
    • Andersen, R.A.1    Saunders, G.W.2    Paskind, M.P.3    Sexton, J.4
  • 35
    • 40749089558 scopus 로고    scopus 로고
    • Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data
    • Ras J, Claustre H, Uitz J, (2008) Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data. Biogeosciences 5: 353-369.
    • (2008) Biogeosciences , vol.5 , pp. 353-369
    • Ras, J.1    Claustre, H.2    Uitz, J.3
  • 36
    • 37249033885 scopus 로고    scopus 로고
    • Two high-nutrient low chlorophyll phytoplankton assemblages: the tropical Central Pacific and the offshore Peru-Chile current
    • Gomez F, Claustre H, Raimbault P, Souissi S, (2007) Two high-nutrient low chlorophyll phytoplankton assemblages: the tropical Central Pacific and the offshore Peru-Chile current. Biogeosciences 4: 1101-1113.
    • (2007) Biogeosciences , vol.4 , pp. 1101-1113
    • Gomez, F.1    Claustre, H.2    Raimbault, P.3    Souissi, S.4
  • 37
    • 35348825685 scopus 로고    scopus 로고
    • Contribution of picoplankton to the total particulate organic carbon concentration in the eastern South Pacific
    • Grob C, Ulloa O, Claustre H, Huot Y, Alarcon G, et al. (2007) Contribution of picoplankton to the total particulate organic carbon concentration in the eastern South Pacific. Biogeosciences 4: 837-852.
    • (2007) Biogeosciences , vol.4 , pp. 837-852
    • Grob, C.1    Ulloa, O.2    Claustre, H.3    Huot, Y.4    Alarcon, G.5


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