Vibrio mexicanus sp. nov., isolated from a cultured oyster Crassostrea corteziensis

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 108, Issue 2, 2015, Pages 355-364

  González Castillo, Adrián ^a   Enciso Ibarrra, Julissa ^a   Bolán Mejia, M Carmen ^a   Balboa, Sabela ^b   Lasa, Aide ^b   Romalde, Jesús L ^b   Cabanillas Beltrán, Hector ^c   Gomez Gil, Bruno ^a  

^a CENTRO DE INVESTIGACIÓN EN ALIMENTACIÓN Y DESARROLLO   (Mexico)

^b UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^c LABORATORIO INTEGRAL DE INVESTIGACIÓN EN ALIMENTOS   (Mexico)

Author keywords

Vibrio aestivus; Vibrio marisflavi; Vibrio mexicanus; Vibrio naceae

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; RNA 16S; BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CELL DIVISION; CRASSOSTREA CORTEZIENSIS; DNA BASE COMPOSITION; FTSZ GENE; GAPA GENE; GENE SEQUENCE; GENOME ANALYSIS; HOUSEKEEPING GENE; NONHUMAN; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RECA GENE; TOPA GENE; VIBRIO; VIBRIO AESTIVUS; VIBRIO MARISFLAVI; VIBRIO MARITIMUS; VIBRIO MEXICANUS; VIBRIO VARIABILIS; AEROBIC METABOLISM; ANAEROBIC GROWTH; ANIMAL; BACTERIAL GENE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; GENETICS; ISOLATION AND PURIFICATION; LOCOMOTION; MICROBIOLOGY; MOLECULAR GENETICS; MULTILOCUS SEQUENCE TYPING; OYSTER; PHYSIOLOGY;

AEROBIOSIS; ANAEROBIOSIS; ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, BACTERIAL; GENOME, BACTERIAL; LOCOMOTION; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; OSTREIDAE; PHYLOGENY; RNA, RIBOSOMAL, 16S; VIBRIO;

EID: 84943353535     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-015-0488-1     Document Type: Article

References (37)

1. Amaral GRS, Dias GM, Wellington-Oguri M, Chimetto L, Campeão ME, Thompson FL, Thompson CC (2014) Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences. Int J Syst Evol Microbiol 64: 357-365.
2. Auch AF, von Jan M, Klenk H-P, Göker M (2010) Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genom Sci 2: 117-134.
3. Austin B, Austin DA (1999) Bacterial fish pathogens: disease of farmed and wild fish, 3rd edn. Springer, Berlin.
4. Cano-Gomez A, Goulden EF, Owens L, Høj L (2010) Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia. FEMS Microbiol Lett 302: 175-181.
5. Chimetto LA, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL (2011) Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum. Int J Syst Evol Microbiol 61: 3009-3015.
6. Dieguez AL, Beaz-Hidalgo R, Cleenwerck I, Balboa S, de Vos P, Romalde JL (2011) Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussates. Int J Syst Evol Microbiol 61: 2406-2411.
7. Gomez-Gil B, RoqueA TurnbullJF, Tron-Mayen L (1998) Species of Vibrio isolated from hepatopancreas, hemolymph and digestive tract of a population of healthy juvenile Penaeus vannamei. Aquaculture 163: 1-9.
8. Gomez-Gil B, Thompson FL, Thompson CC, Swings J (2003) Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis. Int J Syst Evol Microbiol 53: 239-243.
9. González-Castillo A, Balboa S, Romalde JL, Gomez-Gil B (2014) Vibrio crosai sp. nov., isolated from a cultured oyster Crassostrea gigas. Antonie Van Leeuwenhoek 106: 457-463.
10. Henz S, Huson D, Auch AF, Nieselt-Struwe K, Schuster S (2005) Whole-genomeprokaryotic phylogeny. Bioinformatics 21(10): 2329-2335.
11. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23(2): 254-267.
12. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62: 716-721.
13. Lucena T, Ruvira MA, Arahal DR, Macián MC, Pujalte MJ (2012) Vibrio aestivus sp. nov. and Vibrio quintilis sp. nov., related to Marisflavi and Gazogenes clades, respectively. Syst Appl Microbiol 35: 427-431.
14. MacFaddin JF (1993) Pruebas bioquímicas para la identificación de bacterias de importancia clínica (translation by Médica Panamericana SA). Williams & Wilkins, Baltimore.
15. Macián MC, Ludwig W, Aznar R, Grimont P, Schleifer KH, Garay E, Pujalte MJ (2001) Vibrio lentus sp. nov., isolated from Mediterranean oysters. Int J Syst Evol Microbiol 51: 1449-1456.
16. Meier-Kolthoff JP, Alexander AF, Hans-Peter K, Markus K (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform 14: 60.
17. Moreira AP, Pereira N Jr, Thompson FL (2011) Usefulness of a real-time PCR platform for G?C content and DNA-DNA hybridization estimations in vibrios. Int J Syst Evol Microbiol 61: 2379-2383.
18. Moreira AP, Duytschaever G, Tonon LAC, Dias GM, Mesquita M, Cnockaert M, Francini-Filho RB, DeVos P, Thompson CC, Thompson FL (2014) Vibrio madracius sp. nov. isolated from Madracisdecactis (Scleractinia) in St. Peter & St. Paul Archipelago, Mid-Atlantic Ridge, Brazil. Curr Microbiol 69(4): 405-411.
19. Noguerola I, Blanch AR (2008) Identification of Vibrio spp. with a set of dichotomous keys. J Appl Microbiol 105: 175-185.
20. Oren A, Garrity GM (2014) List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 64: 3603-3606.
21. Oren A, Garrity GM (2015) List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 65: 1-4.
22. Pascual J, Macián MC, Arahal DR, Garay E, Pujalte MJ (2010) Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol 60: 154-165.
23. Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and IlluminaMiSeq sequencers. BMC Genom 13(1): 341.
24. Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131.
25. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. Microbial ID Inc, Newark.
26. Sawabe T, Kita-Tsukamoto K, Thompson FL (2007) Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J Bacteriol 189: 7932-7936.
27. Sawabe T, Ogura Y, Matsumura Y, Feng G, Rohul Amin AKM, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson FL, Gomez-Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T (2013) Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front Microbiol 4: (414)1-14.
28. Sheu S-Y, Jiang S-R, Chen CA, Wang JT, Chen WM (2011) Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol 61: 2180-2185.
29. Soto-Rodriguez SA, Gomez-Gil B, Lozano-Olvera R, Betancourt-Lozano M, Morales-Covarrubias MS (2015) Field and experimental evidence of Vibrio parahaemolyticus as the causative agent of acute hepatopancreatic necrosis disease of cultured shrimp (Litopenaeus vannamei) in Northwestern Mexico. Appl Environ Microbiol 81: 1689-1699.
30. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
31. Tarazona E, LucenaT Arahal DR, Macián MC, Ruvira MA, Pujalte MJ (2014) Multilocus sequence analysis of putative Vibrio mediterranei strains and description of Vibrio thalassae sp. nov. Syst Appl Microbiol 37: 320-328.
32. Thompson FL, Swings J (2006) Taxonomy of the vibrios. In: Thompson FL, Austin B, Swings J (eds) The biology of vibrios. American Society for Microbiology, Washington, pp 29-43.
33. Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL (2015) Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol 197: 359-370.
34. Thompson CC, Chimetto L, Edwards RA, Swings J, Stackebrandt E, Thompson FL (2013) Microbial genomic taxonomy. BMC Genom 14: 913.
35. Tran L, Nunan L, Redman RM, Mohney LL, Pantoja CR, Fitzsimmons K, Lightner DV (2013) Determination of the infectious nature of the agent of acute hepatopancreatic necrosis syndrome affecting penaeid shrimp. Dis Aquat Organ 105: 45-55.
36. Wang H, Liu J, Wang Y, Zhang X-H (2011) Vibrio marisflavi sp. nov., isolated from sea water. Int J Syst Evol Microbiol 61: 568-573.
37. Yoshizawa S, Wada M, Yokota A, Kogure K (2010) Vibrio sagamiensis sp. nov., luminous marine bacteria isolated from sea water. J Gen Appl Microbiol 56: 499-507.