Vibrio sagamiensis sp. nov., luminous marine bacteria isolated from sea water

Journal of General and Applied Microbiology

Volumn 56, Issue 6, 2010, Pages 499-507

  Yoshizawa, Susumu ^a   Wada, Minoru ^b   Yokota, Akira ^a   Kogure, Kazuhiro ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NAGASAKI UNIVERSITY   (Japan)

Author keywords

Iuminous bacteria; Marine bacteria; Vibrio sagamiensis sp. nov.; Vibrionaceae

Indexed keywords

RNA 16S; SEA WATER;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CLADISTICS; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE LOCUS; GENE SEQUENCE; JAPAN; MARINE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; VIBRIO; VIBRIO AZUREUS; VIBRIO PARAHAEMOLYTICUS; VIBRIO SAGAMIENSIS;

BACTERIAL TYPING TECHNIQUES; FATTY ACIDS; JAPAN; LUMINESCENCE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; VIBRIO;

VIBRIO; VIBRIONACEAE;

EID: 79551549325     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.499     Document Type: Article

References (26)

1. Baumann, P. and Baumann, L. (1984) Genus II. Photobacterium Beijerinck 1889, 401AL. Bergey's Man. Syst. Bacteriol., 1, 539-545.
2. Baumann, P. and Schubert, R. H. W. (1984) Family II. Vibrionaceae Veron 1965, 5245AL. Bergey's Man. Syst. Bacteriol., 1, 516-517.
3. Dunlap, P. V. and Kita-Tsukamoto, K. (2006) Luminous bacteria. The Prokaryotes, 3rd ed., Vol. 2, 2, 863-892.
4. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
5. Farmer, J. J., III, Janda, J. M., Brenner, F. W., Cameron, D. N., and Birkhead, K. M. (2005) Genus Vibrio. In Bergey's Manual of Systematic Bacteriology, 2nd ed., Vol. 2, Part B, The Proteobacteria, ed. by Brenner, D. J., Krieg, N. R., and Staley, J. T., Springer, New York, pp. 494-546.
6. Felsenstein, J. (1985) Confidence-limits on phylogenies - An approach using the bootstrap. Evolution, 39, 783-791.
7. Fukui, Y. and Sawabe, T. (2007) Improved one-step colony PCR detection of Vibrio harveyi. Microbes Environ., 22, 1-10.
8. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. J. Mol. Evol., 16, 111-120.
9. Lane, D. J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, ed. by Stackebrandt, E. and Goodfellow, M., John Wiley and Sons, New York, pp. 115-147.
10. Marmur, J. (1961) Procedure for isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol., 3, 208-218.
11. Mellado, E., Moore, E. R. B., Nieto, J. J., and Ventosa, A. (1996) Analysis of 16S rRNA gene sequences of Vibrio costicola strains: Description of Salinivibrio costicola gen nov, comb nov. Int. J. Syst. Bacteriol., 46, 817-821.
12. Mesbah, M., Premachandran, U., and Whitman, W. B. (1989) Precise measurement of the G+C content of deoxyribonucleic- acid by high-performance liquid-chromatography. Int. J. Syst. Bacteriol., 39, 159-167.
13. Nishino, T., Ikemoto, E., and Kogure, K. (2004) Application of atomic force microscopy to observation of marine bacteria. J. Oceanogr., 60, 219-225.
14. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
15. Sawabe, T., Kita-Tsukamoto, K., and Thompson, F. L. (2007) Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J. Bacteriol., 189, 7932-7936.
16. Stackebrandt, E. and Goebel, B. M. (1994) A place for DNA- DNA reassociation and 16S ribosomal-RNA sequenceanalysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol., 44, 846-849.
17. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
18. Thompson, F. L., Gevers, D., Thompson, C. C., Dawyndt, P., Naser, S., Hoste, B., Munn, C. B., and Swings, J. (2005) Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol., 71, 5107-5115.
19. Thompson, F. L., Gomez-Gil, B., Vasconcelos, A. T. R., and Sawabe, T. (2007) Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species. Appl. Environ. Microbiol., 73, 4279-4285.
20. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
21. Thompson, F. L., Hoste, B., Thompson, C. C., Goris, J., Gomez-Gil, B., Huys, L., De Vos, P., and Swings, J. (2002) Enterovibrio norvegicus gen. nov., sp nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: A new member of the family Vibrionaceae. Int. J. Syst. Evol. Microbiol., 52, 2015-2022.
22. Thompson, F. L., Hoste, B., Vandemeulebroecke, K., and Swings, J. (2003a) Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol., 53, 1615-1617.
23. Thompson, F. L., Iida, T., and Swings, J. (2003b) Biodiversity of Vibrios. Microbiol. Mol. Biol. Rev., 68, 403-431.
24. Urbanczyk, H., Ast, J. C., Higgins, M. J., Carson, J., and Dunlap, P. V. (2007) Reclassification of Vibrio fi scheri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fi scheri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov. Int. J. Syst. Evol. Microbiol., 57, 2823-2829.
25. Xie, C. H. and Yokota, A. (2003) Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J. Gen. Appl. Microbiol., 49, 345-349.
26. Yoshizawa, S., Wada, M., Kita-Tsukamoto, K., Ikemoto, E., Yokota, A., and Kogure, K. (2009) Vibrio azureus sp. nov., a luminous marine bacterium isolated from seawater. Int. J. Syst. Evol. Microbiol., 59, 1645-1649.