Vibrio atlanticus sp. nov. and vibrio artabrorum sp. nov., isolated from the clams ruditapes philippinarum and ruditapes decussatus

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 10, 2011, Pages 2406-2411

  Diéguez, Ana L ^a   Beaz Hidalgo, Roxana ^a,c   Cleenwerck, Ilse ^b   Balboa, Sabela ^a   de Vos, Paul ^b   Romalde, Jesús L ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b GHENT UNIVERSITY   (Belgium)

^c UNIVERSITAT ROVIRA I VIRGILI   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ATPA GENE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIUM ISOLATION; CLADISTICS; CLAM; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENUS; HOUSEKEEPING GENE; MARINE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PYRH GENE; RECA GENE; RNA SEQUENCE; RPOA GENE; RPOD GENE; RUDITAPES DECUSSATUS; RUDITAPES PHILIPPINARUM; SEQUENCE ANALYSIS; SPLENDIDUS; TAXONOMIC IDENTIFICATION; VIBRIO; VIBRIO ARTABRORUM; VIBRIO ATLANTICUS;

AEROBIOSIS; ANAEROBIOSIS; ANIMALS; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BIVALVIA; CLUSTER ANALYSIS; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VIBRIO;

ATLANTICUS; BIVALVIA; VENERUPIS (RUDITAPES) DECUSSATUS; VENERUPIS (RUDITAPES) PHILIPPINARUM; VIBRIO;

EID: 80053646318     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.025320-0     Document Type: Article

References (40)

1. Austin, B., Austin, D. A., Blanch, A. R., Cerda, M., Grimont, P. A. D., Jofre, J., Koblavi, S., Larsen, J. L., Pedersen, K. & other authors (1997). A comparison of methods for the typing of fish-pathogenic Vibrio spp. Syst Appl Microbiol 20, 89-101.
2. Beaz-Hidalgo, R., Cleenwerck, I., Balboa, S., De Wachter, M., Thompson, F. L., Swings, J., De Vos, P. & Romalde, J. L. (2008). Diversity of Vibrios associated with reared clams in Galicia (NW Spain). Syst Appl Microbiol 31, 215-222.
3. Beaz-Hidalgo, R., Doce, A., Pascual, J., Toranzo, A. E. & Romalde, J. L. (2009). Vibrio gallaecicus sp. nov. isolated from cultured clams in north-western Spain. Syst Appl Microbiol 32, 111-117.
4. Beaz-Hidalgo, R., Balboa, S., Romalde, J. L. & Figueras, M. J. (2010). Diversity and pathogenicity of Vibrio species in cultured bivalve molluscs. Environ Microbiol Reports 2, 34-43.
5. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D. & Swings, J. (2002). Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int J Syst Evol Microbiol 52, 1551-1558.
6. Colwell, R. R. (2006). A global and historical perspective of the genus Vibrio. In The Biology of Vibrios, pp. 3-11. Edited by F. L. Thompson, B. Austin & J. Swings. Washington, DC: American Society for Microbiology.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Farto, R., Armada, S. P., Montes, M., Guisande, J. A., Pérez, M. J. & Nieto, T. P. (2003). Vibrio lentus associated with diseased wild octopus (Octopus vulgaris). J Invertebr Pathol 83, 149-156.
9. Gay, M., Renault, T., Pons, A. M. & Le Roux, F. (2004). Two Vibrio splendidus related strains collaborate to kill Crassostrea gigas: taxonomy and host alterations. Dis Aquat Organ 62, 65-74.
10. Gómez-León, J., Villamil, L., Lemos, M. L., Novoa, B. & Figueras, A. (2005). Isolation of Vibrio alginolyticus and Vibrio splendidus from aquacultured carpet shell clam (Ruditapes decussatus) larvae associated with mass mortalities. Appl Environ Microbiol 71, 98-104.
11. Goris, J., Suzuki, K., de Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
12. Jensen, S., Samuelsen, O. B., Andersen, K., Torkildsen, L., Lambert, C., Choquet, G., Paillard, C. & Bergh, O. (2003). Characterization of strains of Vibrio splendidus and V. tapetis isolated from corkwing wrasse Symphodus melops suffering vibriosis. Dis Aquat Organ 53, 25-31.
13. Kueh, C. S. W. & Chan, K. Y. (1985). Bacteria in bivalve shellfish with special reference to the oyster. J Appl Bacteriol 59, 41-47.
14. Lacoste, A., Jalabert, F., Malham, S., Cueff, A., Gélébart, F., Cordevant, C., Lange, M. & Poulet, S. A. (2001). A Vibrio splendidus strain is associated with summer mortality of juvenile oysters Crassostrea gigas in the Bay of Morlaix (North Brittany, France). Dis Aquat Organ 46, 139-145.
15. Lambert, C., Nicolas, J. L., Cilia, V. & Corre, S. (1998). Vibrio pectenicida sp. nov., a pathogen of scallop (Pecten maximus) larvae. Int J Syst Bacteriol 48, 481-487.
16. Le Roux, F., Gay, M., Lambert, C., Waechter, M., Poubalanne, S., Chollet, B., Nicolas, J. L. & Berthe, F. C. J. (2002). Comparative analysis of Vibrio splendidus-related strains isolated during Crassostreae gigas mortality events. Aquat Living Resour 15, 251-258.
17. Leano, E. M., Lavilla-Pitogo, C. R. & Paner, M. G. (1998). Bacterial flora in the hepatopancreas of pond reared Penaeus monodon juveniles with luminous vibriosis. Aquaculture 164, 367-374.
18. Lemos, M. L., Toranzo, A. E. & Barja, J. L. (1985). Modified medium for the oxidation-fermentation test in the identification of marine bacteria. Appl Environ Microbiol 49, 1541-1543.
19. MacFaddin, J. F. (1993). Pruebas Bioqui{dotless}́micas para la Identificación de Bacterias de Importancia Cli{dotless}́nica (translation by Médica Panamericana SA). Baltimore, MD: Williams & Wilkins (in Spanish).
20. Martin, D. P., Williamson, C. & Posada, D. (2005). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Nhung, P. H., Shah, M. M., Ohkusu, K., Noda, M., Hata, H., Sun, X. S., Iihara, H., Goto, K., Masaki, T. & Miyasaka, J. (2007). The dnaJ gene as a novel phylogenetic marker for identification of Vibrio species. Syst Appl Microbiol 30, 309-315.
23. Nicolas, J. L., Corre, S., Gauthier, G., Robert, R. & Ansquer, D. (1996). Bacterial problems associated with scallop Pecten maximus larval culture. Dis Aquat Organ 27, 67-76.
24. Pacini, F. (1854). Osservazione microscopiche e deduzione patologiche sul colera asiatico. Gaz Med Italiana 6, 405-412.
25. Pascual, J., Macián, M. C., Arahal, D. R., Garay, E. & Pujalte, M. J. (2010). Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol 60, 154-165.
26. Posada, D. (2008). ModelTest: phylogenetic model averaging. Mol Biol Evol 25, 1253-1256.
27. Prado, S., Romalde, J. L., Montes, J. & Barja, J. L. (2005). Pathogenic bacteria isolated from disease outbreaks in shellfish hatcheries. First description of Vibrio neptunius as an oyster pathogen. Dis Aquat Organ 67, 209-215.
28. Pujalte, M. J., Ortigosa, M., Urdaci, M. C., Garay, E. & Grimont, P. A. D. (1993). Vibrio mytili sp. nov., from mussels. Int J Syst Bacteriol 43, 358-362.
29. Romalde, J. L. & Toranzo, A. E. (1991). Evaluation of the API 20E system for the routine diagnosis of the enteric redmouth disease. Bull Eur Assoc Fish Pathol 11, 147-149.
30. Sawabe, T., Kita-Tsukamoto, K. & Thompson, F. L. (2007). Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J Bacteriol 189, 7932-7936.
31. Sobecky, P. A., Mincer, T. J., Chang, M. C., Toukdarian, A. & Helinski, D. R. (1998). Isolation of broad-host-range replicons from marine sediment bacteria. Appl Environ Microbiol 64, 2822-2830.
32. Sugumar, G., Nakai, T., Hirata, Y., Matsubara, D. & Muroga, K. (1998). Vibrio splendidus biovar II as the causative agent of bacillary necrosis of Japanese oyster Crassostrea gigas larvae. Dis Aquat Organ 33, 111-118.
33. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
34. Thompson, F. L. & Swings, J. (2006). Taxonomy of the vibrios. In The Biology of Vibrios, pp. 29-43. Edited by F. L. Thompson, B. Austin & J. Swings. Washington, DC: American Society for Microbiology.
35. Thompson, C. C., Thompson, F. L., Vandemeulebroecke, K., Hoste, B., Dawyndt, P. & Swings, J. (2004). Use of recA as an alternative phylogenetic marker in the family Vibrionaceae. Int J Syst EvolMicrobiol 54, 919-924.
36. Thompson, F. L., Gevers, D., Thompson, C. C., Dawyndt, P., Naser, S., Hoste, B., Munn, C. B. & Swings, J. (2005). Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71, 5107-5115.
37. Thompson, C. C., Thompson, F. L., Vicente, A. C. & Swings, J. (2007). Phylogenetic analysis of vibrios and related species by means of atpA gene sequences. Int J Syst Evol Microbiol 57, 2480-2484.
38. Waechter, M., Le Roux, F., Nicolas, J. L., Marissal, E. & Berthe, F. (2002). [Characterization of pathogenic bacteria of the cupped oyster Crassostrea gigas]. C R Biol 325, 231-238 (in French).
39. West, P. A., Brayton, P. R., Bryant, T. N. & Colwell, R. R. (1986). Numerical taxonomy of vibrios isolated from aquatic environments. Int J Syst Bacteriol 36, 531-543.
40. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.