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Volumn 21, Issue 10, 2005, Pages 2329-2335

Whole-genome prokaryotic phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

SMALL SUBUNIT RIBOSOMAL RNA;

EID: 19544379902     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth324     Document Type: Article
Times cited : (173)

References (30)
  • 4
    • 34047267637 scopus 로고
    • A canonical decomposition theory for metrics on a finite set
    • Bandelt,H.-J. and Dress,A.W.M. (1992) A canonical decomposition theory for metrics on a finite set. Adv. Math., 92, 47-105.
    • (1992) Adv. Math. , vol.92 , pp. 47-105
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 5
    • 84957000934 scopus 로고    scopus 로고
    • NeighborNet: An agglomerative method for the construction of planar phylogenetic networks
    • Guigó,R. and Gusfield,D. (eds), LNCS
    • Bryant,D. and Moulton,V. (2002) NeighborNet: an agglomerative method for the construction of planar phylogenetic networks. In Guigó,R. and Gusfield,D. (eds), Algorithms in Bioinformatics, WABI 2002, Volume LNCS 2452, pp. 375-391.
    • (2002) Algorithms in Bioinformatics, WABI 2002 , vol.2452 , pp. 375-391
    • Bryant, D.1    Moulton, V.2
  • 6
    • 19544392738 scopus 로고    scopus 로고
    • Completed genomes bacteria
    • EBI
    • EBI (2003) Completed genomes bacteria.
    • (2003)
  • 7
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (version 3.2)
    • Felsenstein,J. (1989) PHYLIP - phylogeny inference package (version 3.2). Cladistics, 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 8
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel,O. (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol., 14, 685-695.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 10
    • 0031678692 scopus 로고    scopus 로고
    • Splits Tree: A program for analyzing and visualizing evolutionary data
    • Huson,D.H. (1998) Splits Tree: a program for analyzing and visualizing evolutionary data. Bioinformatics, 14, 68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 11
    • 4544229161 scopus 로고    scopus 로고
    • Phylogenetic trees based on gene content
    • Huson,D.H. and Steel,M. (2004) Phylogenetic trees based on gene content. Bioinformatics, 20, 2044-2049.
    • (2004) Bioinformatics , vol.20 , pp. 2044-2049
    • Huson, D.H.1    Steel, M.2
  • 13
    • 0001897446 scopus 로고    scopus 로고
    • Phylogeny of bacteria beyond the 16S rRNA standard
    • Ludwig,W. and Schleifer,K.-H. (1999) Phylogeny of bacteria beyond the 16S rRNA standard. ASM News, 752-757.
    • (1999) ASM News , pp. 752-757
    • Ludwig, W.1    Schleifer, K.-H.2
  • 14
    • 2942622384 scopus 로고    scopus 로고
    • Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and domiance of horizontal gene transfer in the evolution of prokaryotes
    • Mirkin,B.G., Fenner,T.I., Galperin,M.Y. and Koonin,E.V. (2003) Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and domiance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol. Biol., 3, 2.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 2
    • Mirkin, B.G.1    Fenner, T.I.2    Galperin, M.Y.3    Koonin, E.V.4
  • 15
    • 0035749612 scopus 로고    scopus 로고
    • The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
    • Moran,N.A. and Mira,A. (2001) The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biol., 2, 1-12.
    • (2001) Genome Biol. , vol.2 , pp. 1-12
    • Moran, N.A.1    Mira, A.2
  • 16
    • 14744272696 scopus 로고    scopus 로고
    • Microbial complete genomes taxonomy
    • NCBI
    • NCBI (2003) Microbial complete genomes taxonomy.
    • (2003)
  • 17
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Olsen,G.J., Woese,C.R. and Overbeek,R (1994) The winds of (evolutionary) change: breathing new life into microbiology. J Bact., 176, 1-6.
    • (1994) J. Bact. , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 19
    • 0023375195 scopus 로고
    • The Neighbor-Joining method: A new method for reconstructing phylogenetic trees
    • Saitou,N. and Nei,M. (1987) The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 0033677382 scopus 로고    scopus 로고
    • Early eukaryote evolution based on mitochondrial gene order breakpoints
    • Sankhoff,D., Bryant,D., Denault,M., Lang,B.F. and Burger,G. (2000) Early eukaryote evolution based on mitochondrial gene order breakpoints. J. Comp. Biol. 7, 521-535.
    • (2000) J. Comp. Biol. , vol.7 , pp. 521-535
    • Sankhoff, D.1    Bryant, D.2    Denault, M.3    Lang, B.F.4    Burger, G.5
  • 22
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel,B., Bork,P. and Huynen,M.A. (1999) Genome phylogeny based on gene content. Nature, 21, 108-110.
    • (1999) Nature , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 23
    • 0036416151 scopus 로고    scopus 로고
    • Testing the hypothesis of common ancestry
    • Sober,E. and Steel,M. (2002) Testing the hypothesis of common ancestry. J. theor. Biol., 218, 395-408.
    • (2002) J. Theor. Biol. , vol.218 , pp. 395-408
    • Sober, E.1    Steel, M.2
  • 25
    • 0024114801 scopus 로고
    • A note on the neighbour-joining algorithm of Saitou and Nei
    • Studier,J.A. and Keppler, K.J. (1988) A note on the neighbour-joining algorithm of Saitou and Nei. Mol. Biol. Evol., 5, 729-731.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 729-731
    • Studier, J.A.1    Keppler, K.J.2
  • 27
    • 19544368330 scopus 로고    scopus 로고
    • Fast phylogenetic methods for the analysis of genome rearrangement data: An empirical study
    • Wang,L.S., Jansen,R.K., Moret,B.M.E., Raubeson,L.A. and Warnow,T. (2003) Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study.
    • (2003)
    • Wang, L.S.1    Jansen, R.K.2    Moret, B.M.E.3    Raubeson, L.A.4    Warnow, T.5
  • 28
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese,C.R. (1987) Bacterial evolution. Microbiol. Rev., 51, 221-272.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-272
    • Woese, C.R.1
  • 29
    • 19544369344 scopus 로고    scopus 로고
    • Prokaryote systematics: The evolution of a science
    • Balows,A., Trüper,H.G., Dworkin,M., Harder,W. and Schleifer,K.H. (eds), Springer Verlag, New York
    • Woese,C.R. (2000) Prokaryote systematics: the evolution of a science. In Balows,A., Trüper,H.G., Dworkin,M., Harder,W. and Schleifer,K.H. (eds), The Prokaryotes, Volume 3. Springer Verlag, New York.
    • (2000) The Prokaryotes , vol.3
    • Woese, C.R.1
  • 30
    • 0348044549 scopus 로고    scopus 로고
    • Genome trees constructed using five different approaches suggest new major bacterial clades
    • Wolf,Y.I., Rogozin,I.B., Grishin,N.V., Tatusov,R.L. and Koonin,E.V. (2001) Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evolut. Biol., 1, 8.
    • (2001) BMC Evolut. Biol. , vol.1 , pp. 8
    • Wolf, Y.I.1    Rogozin, I.B.2    Grishin, N.V.3    Tatusov, R.L.4    Koonin, E.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.