-
1
-
-
0036338150
-
Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
-
Abecasis GR, Cherny SS, Cookson WO, Cardon LR (2002) Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 30(1):97–101. doi:10.1038/ng786
-
(2002)
Nat Genet
, vol.30
, Issue.1
, pp. 97-101
-
-
Abecasis, G.R.1
Cherny, S.S.2
Cookson, W.O.3
Cardon, L.R.4
-
2
-
-
66349113579
-
A graphical algorithm for fast computation of identity coefficients and generalized kinship coefficients
-
Abney M (2009) A graphical algorithm for fast computation of identity coefficients and generalized kinship coefficients. Bioinformatics 25(12):1561–1563. doi:10.1093/bioinformatics/btp185
-
(2009)
Bioinformatics
, vol.25
, Issue.12
, pp. 1561-1563
-
-
Abney, M.1
-
3
-
-
0142063079
-
Polygenic inheritance of breast cancer: implications for design of association studies
-
Antoniou AC, Easton DF (2003) Polygenic inheritance of breast cancer: implications for design of association studies. Genet Epidemiol 25(3):190–202. doi:10.1002/gepi.10261
-
(2003)
Genet Epidemiol
, vol.25
, Issue.3
, pp. 190-202
-
-
Antoniou, A.C.1
Easton, D.F.2
-
4
-
-
0000937686
-
Tests for linear trends in proportions and frequencies
-
Armitage P (1955) Tests for linear trends in proportions and frequencies. Biometrics 11(3):375–386
-
(1955)
Biometrics
, vol.11
, Issue.3
, pp. 375-386
-
-
Armitage, P.1
-
5
-
-
0042387785
-
Novel case-control test in a founder population identifies p-selectin as an atopy-susceptibility locus
-
Bourgain C, Hoffjan S, Nicolae R, Newman D, Steiner L, Walker K, Reynolds R, Ober C, McPeek MS (2003) Novel case-control test in a founder population identifies p-selectin as an atopy-susceptibility locus. Am J Hum Genet 73(3):612–626. doi:10.1086/378208
-
(2003)
Am J Hum Genet
, vol.73
, Issue.3
, pp. 612-626
-
-
Bourgain, C.1
Hoffjan, S.2
Nicolae, R.3
Newman, D.4
Steiner, L.5
Walker, K.6
Reynolds, R.7
Ober, C.8
McPeek, M.S.9
-
6
-
-
19944431730
-
Case-control single-marker and haplotypic association analysis of pedigree data
-
Browning SR, Briley JD, Briley LP, Chandra G, Charnecki JH, Ehm MG, Johansson KA, Jones BJ, Karter AJ, Yarnall DP, Wagner MJ (2005) Case-control single-marker and haplotypic association analysis of pedigree data. Genet Epidemiol 28(2):110–122. doi:10.1002/gepi.20051
-
(2005)
Genet Epidemiol
, vol.28
, Issue.2
, pp. 110-122
-
-
Browning, S.R.1
Briley, J.D.2
Briley, L.P.3
Chandra, G.4
Charnecki, J.H.5
Ehm, M.G.6
Johansson, K.A.7
Jones, B.J.8
Karter, A.J.9
Yarnall, D.P.10
Wagner, M.J.11
-
7
-
-
77958157753
-
Allele-sharing statistics using information on family history
-
Callegaro A, Meulenbelt I, Kloppenburg M, Slagboom PE, Houwing-Duistermaat JJ (2010) Allele-sharing statistics using information on family history. Ann Hum Genet 74(6):547–554. doi:10.1111/j.1469-1809.2010.00602.x
-
(2010)
Ann Hum Genet
, vol.74
, Issue.6
, pp. 547-554
-
-
Callegaro, A.1
Meulenbelt, I.2
Kloppenburg, M.3
Slagboom, P.E.4
Houwing-Duistermaat, J.J.5
-
8
-
-
84871344445
-
Using family-based imputation in genome-wide association studies with large complex pedigrees: the framingham heart study
-
Chen MH, Huang J, Chen WM, Larson MG, Fox CS, Vasan RS, Seshadri S, O’Donnell CJ, Yang Q (2012) Using family-based imputation in genome-wide association studies with large complex pedigrees: the framingham heart study. PLoS One 7(12):e51,589. doi:10.1371/journal.pone.0051589
-
(2012)
PLoS One
, vol.7
, Issue.12
, pp. e51,589
-
-
Chen, M.H.1
Huang, J.2
Chen, W.M.3
Larson, M.G.4
Fox, C.S.5
Vasan, R.S.6
Seshadri, S.7
O’Donnell, C.J.8
Yang, Q.9
-
10
-
-
52449118475
-
Testing for association on the x chromosome
-
Clayton D (2008) Testing for association on the x chromosome. Biostatistics 9(4):593–600. doi:10.1093/biostatistics/kxn007
-
(2008)
Biostatistics
, vol.9
, Issue.4
, pp. 593-600
-
-
Clayton, D.1
-
11
-
-
0000642942
-
Some methods of strenthening the common chi-square test
-
Cochran W (1954) Some methods of strenthening the common chi-square test. Biometrics 10:417–451
-
(1954)
Biometrics
, vol.10
, pp. 417-451
-
-
Cochran, W.1
-
13
-
-
0002629270
-
Maximum-likelihood estimation from incomplete data via the em algorithm
-
Dempster A, Laird NM, Rubin DB (1977) Maximum-likelihood estimation from incomplete data via the em algorithm. J R Stat Soc 39:1–38
-
(1977)
J R Stat Soc
, vol.39
, pp. 1-38
-
-
Dempster, A.1
Laird, N.M.2
Rubin, D.B.3
-
14
-
-
0032714352
-
Genomic control for association studies
-
Devlin B, Roeder K (1999) Genomic control for association studies. Biometrics 55(4):997–1004
-
(1999)
Biometrics
, vol.55
, Issue.4
, pp. 997-1004
-
-
Devlin, B.1
Roeder, K.2
-
15
-
-
0025767240
-
Determinants of disease and disability in the elderly: the rotterdam elderly study
-
Hofman A, Grobbee DE, de Jong PT, van den Ouweland FA (1991) Determinants of disease and disability in the elderly: the rotterdam elderly study. Eur J Epidemiol 7(4):403–422
-
(1991)
Eur J Epidemiol
, vol.7
, Issue.4
, pp. 403-422
-
-
Hofman, A.1
Grobbee, D.E.2
de Jong, P.T.3
van den Ouweland, F.A.4
-
16
-
-
39649108872
-
Genome-wide significance for dense snp and resequencing data
-
Hoggart CJ, Clark TG, De Iorio M, Whittaker JC, Balding DJ (2008) Genome-wide significance for dense snp and resequencing data. Genet Epidemiol 32(2):179–185. doi:10.1002/gepi.20292
-
(2008)
Genet Epidemiol
, vol.32
, Issue.2
, pp. 179-185
-
-
Hoggart, C.J.1
Clark, T.G.2
De Iorio, M.3
Whittaker, J.C.4
Balding, D.J.5
-
17
-
-
61749100579
-
Weighted statistics for aggregation and linkage analysis of human longevity in selected families: the leiden longevity study
-
Houwing-Duistermaat JJ, Callegaro A, Beekman M, Westendorp RG, Slagboom PE, van Houwelingen JC (2009) Weighted statistics for aggregation and linkage analysis of human longevity in selected families: the leiden longevity study. Stat Med 28(1):140–151. doi:10.1002/sim.3421
-
(2009)
Stat Med
, vol.28
, Issue.1
, pp. 140-151
-
-
Houwing-Duistermaat, J.J.1
Callegaro, A.2
Beekman, M.3
Westendorp, R.G.4
Slagboom, P.E.5
van Houwelingen, J.C.6
-
18
-
-
75649139182
-
Single-marker and two-marker association tests for unphased case-control genotype data, with a power comparison
-
Kim S, Morris NJ, Won S, Elston RC (2010) Single-marker and two-marker association tests for unphased case-control genotype data, with a power comparison. Genet Epidemiol 34(1):67–77. doi:10.1002/gepi.20436
-
(2010)
Genet Epidemiol
, vol.34
, Issue.1
, pp. 67-77
-
-
Kim, S.1
Morris, N.J.2
Won, S.3
Elston, R.C.4
-
19
-
-
71249111472
-
Summary of contributions to gaw group 15: family-based samples are useful in identifying common polymorphisms associated with complex traits
-
Knight S, Uh HW, Martinez M (2009) Summary of contributions to gaw group 15: family-based samples are useful in identifying common polymorphisms associated with complex traits. Genet Epidemiol 33(Suppl 1):S99–104. doi:10.1002/gepi.20480
-
(2009)
Genet Epidemiol
, vol.33
, pp. S99-S104
-
-
Knight, S.1
Uh, H.W.2
Martinez, M.3
-
20
-
-
78650653311
-
Methods for testing association between uncertain genotypes and quantitative traits
-
Kutalik Z, Johnson T, Bochud M, Mooser V, Vollenweider P, Waeber G, Waterworth D, Beckmann JS, Bergmann S (2011) Methods for testing association between uncertain genotypes and quantitative traits. Biostatistics 12(1):1–17. doi:10.1093/biostatistics/kxq039
-
(2011)
Biostatistics
, vol.12
, Issue.1
, pp. 1-17
-
-
Kutalik, Z.1
Johnson, T.2
Bochud, M.3
Mooser, V.4
Vollenweider, P.5
Waeber, G.6
Waterworth, D.7
Beckmann, J.S.8
Bergmann, S.9
-
21
-
-
77950460630
-
On genome-wide association studies for family-based designs: an integrative analysis approach combining ascertained family samples with unselected controls
-
Lasky-Su J, Won S, Mick E, Anney RJL, Franke B, Neale B, Biederman J, Smalley SL, Loo SK, Todorov A, Faraone SV, Weiss ST, Lange C (2010) On genome-wide association studies for family-based designs: an integrative analysis approach combining ascertained family samples with unselected controls. Am J Hum Genet 86(4):573–580. doi:10.1016/j.ajhg.2010.02.019
-
(2010)
Am J Hum Genet
, vol.86
, Issue.4
, pp. 573-580
-
-
Lasky-Su, J.1
Won, S.2
Mick, E.3
Anney, R.J.L.4
Franke, B.5
Neale, B.6
Biederman, J.7
Smalley, S.L.8
Loo, S.K.9
Todorov, A.10
Faraone, S.V.11
Weiss, S.T.12
Lange, C.13
-
22
-
-
0001007221
-
The derivation of joint distribution and correlation between relatives by the use of stochastic matrices
-
Li CC, Sacks L (1954) The derivation of joint distribution and correlation between relatives by the use of stochastic matrices. Biometrics 10:347–360
-
(1954)
Biometrics
, vol.10
, pp. 347-360
-
-
Li, C.C.1
Sacks, L.2
-
23
-
-
18944361861
-
oint modeling of linkage and association: identifying snps responsible for a linkage signal
-
Li M, Boehnke M, Abecasis GR (2005) oint modeling of linkage and association: identifying snps responsible for a linkage signal. Am J Hum Genet 76(6):934–949. doi:10.1086/430277
-
(2005)
Am J Hum Genet
, vol.76
, Issue.6
, pp. 934-949
-
-
Li, M.1
Boehnke, M.2
Abecasis, G.R.3
-
24
-
-
37549064336
-
Mach 1.0: rapid haplotype reconstruction and missing genotype inference
-
Li Y, Abecasis G (2006) Mach 1.0: rapid haplotype reconstruction and missing genotype inference. Am J Hum Genet 79:S2290
-
(2006)
Am J Hum Genet
, vol.79
, pp. S2290
-
-
Li, Y.1
Abecasis, G.2
-
25
-
-
77649173768
-
Longitudinal data analysis using generalized linear models
-
Liang KY, Zeger S (1988) Longitudinal data analysis using generalized linear models. Biometrika 73:13–33
-
(1988)
Biometrika
, vol.73
, pp. 13-33
-
-
Liang, K.Y.1
Zeger, S.2
-
26
-
-
79851513063
-
Association tests for x-chromosomal markers a comparison of different test statistics
-
Loley C, Ziegler A, Koening IR (2011) Association tests for x-chromosomal markers a comparison of different test statistics. Hum Hered 71:23–36. doi:10.1159/000323518
-
(2011)
Hum Hered
, vol.71
, pp. 23-36
-
-
Loley, C.1
Ziegler, A.2
Koening, I.R.3
-
27
-
-
0001044972
-
Finding the observed information matrix when using the em algorithm
-
Louis TA (1982) Finding the observed information matrix when using the em algorithm. J R Stat Soc 2:226–233
-
(1982)
J R Stat Soc
, vol.2
, pp. 226-233
-
-
Louis, T.A.1
-
28
-
-
9844227496
-
Chi-square tests with one degree of freedom; extensions of the mantel- haenszel procedure
-
Mantel N (1963) Chi-square tests with one degree of freedom; extensions of the mantel- haenszel procedure. J Am Stat Assoc 58:690–700
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 690-700
-
-
Mantel, N.1
-
29
-
-
34347344976
-
A new multipoint method for genome-wide association studies by imputation of genotypes
-
Marchini J, Howie B, Myers S, McVean G, Donnelly P (2007) A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet 39(7):906–913. doi:10.1038/ng2088
-
(2007)
Nat Genet
, vol.39
, Issue.7
, pp. 906-913
-
-
Marchini, J.1
Howie, B.2
Myers, S.3
McVean, G.4
Donnelly, P.5
-
30
-
-
2942655651
-
Best linear unbiased allele-frequency estimation in complex pedigrees
-
McPeek MS, Wu X, Ober C (2004) Best linear unbiased allele-frequency estimation in complex pedigrees. Biometrics 60(2):359–367. doi:10.1111/j.0006-341X.2004.00180.x
-
(2004)
Biometrics
, vol.60
, Issue.2
, pp. 359-367
-
-
McPeek, M.S.1
Wu, X.2
Ober, C.3
-
31
-
-
44849113821
-
Identification of dio2 as a new susceptibility locus for symptomatic osteoarthritis
-
Meulenbelt I, Min EA (2008) Identification of dio2 as a new susceptibility locus for symptomatic osteoarthritis. Hum Mol Genet 17:1867–1875. doi:10.1093/hmg/ddn082
-
(2008)
Hum Mol Genet
, vol.17
, pp. 1867-1875
-
-
Meulenbelt, I.1
Min, E.A.2
-
32
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38:904–909
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
33
-
-
0034054165
-
A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information
-
Rabinowitz D, Laird N (2000) A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum Hered 50:211–213
-
(2000)
Hum Hered
, vol.50
, pp. 211-213
-
-
Rabinowitz, D.1
Laird, N.2
-
34
-
-
0032427048
-
The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases i. dna pooling
-
Risch N, Teng J (1998) The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases i. dna pooling. Genome Res 8(12):1273–1288
-
(1998)
Genome Res
, vol.8
, Issue.12
, pp. 1273-1288
-
-
Risch, N.1
Teng, J.2
-
35
-
-
0031466983
-
From genotypes to genes: doubling the sample size
-
Sasieni PD (1997) From genotypes to genes: doubling the sample size. Biometrics 53(4):1253–1261
-
(1997)
Biometrics
, vol.53
, Issue.4
, pp. 1253-1261
-
-
Sasieni, P.D.1
-
36
-
-
0034994415
-
Evaluation of candidate genes in case-control studies: a statistical method to account for related subjects
-
Slager SL, Schaid DJ (2001) Evaluation of candidate genes in case-control studies: a statistical method to account for related subjects. Am J Hum Genet 68(6):1457–1462. doi:10.1086/320608
-
(2001)
Am J Hum Genet
, vol.68
, Issue.6
, pp. 1457-1462
-
-
Slager, S.L.1
Schaid, D.J.2
-
37
-
-
0037739970
-
Candidate-gene association studies with pedigree data: controlling for environmental covariates
-
Slager SL, Schaid DJ, Wang L, Thibodeau SN (2003) Candidate-gene association studies with pedigree data: controlling for environmental covariates. Genet Epidemiol 24(4):273–283. doi:10.1002/gepi.10228
-
(2003)
Genet Epidemiol
, vol.24
, Issue.4
, pp. 273-283
-
-
Slager, S.L.1
Schaid, D.J.2
Wang, L.3
Thibodeau, S.N.4
-
38
-
-
84855174922
-
Performance of genotype imputations using data from the 1000 genomes project
-
Sung YJ, Wang L, Rankinen T, Bouchard C, Rao DC (2011) Performance of genotype imputations using data from the 1000 genomes project. Hum Hered 73(1):18–25. doi:10.1159/000334084
-
(2011)
Hum Hered
, vol.73
, Issue.1
, pp. 18-25
-
-
Sung, Y.J.1
Wang, L.2
Rankinen, T.3
Bouchard, C.4
Rao, D.C.5
-
40
-
-
34547756415
-
Case-control association testing with related individuals: a more powerful quasi-likelihood score test
-
Thornton T, McPeek MS (2007) Case-control association testing with related individuals: a more powerful quasi-likelihood score test. Am J Hum Genet 81(2):321–337. doi:10.1086/519497
-
(2007)
Am J Hum Genet
, vol.81
, Issue.2
, pp. 321-337
-
-
Thornton, T.1
McPeek, M.S.2
-
41
-
-
84859919736
-
How to deal with the early gwas data when imputing and combining different arrays is necessary
-
Uh HW, Deelen J, Beekman M, Helmer Q, Rivadeneira F, Hottenga JJ, Boomsma DI, Hofman A, Uitterlinden AG, Slagboom PE, Boehringer S, Houwing-Duistermaat JJ (2011) How to deal with the early gwas data when imputing and combining different arrays is necessary. Eur J Hum Genet 20(5):572–576. doi:10.1038/ejhg.2011.231
-
(2011)
Eur J Hum Genet
, vol.20
, Issue.5
, pp. 572-576
-
-
Uh, H.W.1
Deelen, J.2
Beekman, M.3
Helmer, Q.4
Rivadeneira, F.5
Hottenga, J.J.6
Boomsma, D.I.7
Hofman, A.8
Uitterlinden, A.G.9
Slagboom, P.E.10
Boehringer, S.11
Houwing-Duistermaat, J.J.12
-
43
-
-
71249098352
-
Testing for genetic association taking into account phenotypic information of relatives
-
Uh HW, van der Wijk HJ, Houwing-Duistermaat JJ (2009) Testing for genetic association taking into account phenotypic information of relatives. BMC Proc 3 Suppl 7:S123
-
(2009)
BMC Proc
, vol.3 Suppl 7
, pp. S123
-
-
Uh, H.W.1
van der Wijk, H.J.2
Houwing-Duistermaat, J.J.3
-
44
-
-
33344478136
-
Improved power offered by a score test for linkage disequilibrium mapping of quantitative-trait loci by selective genotyping
-
Wallace C, Chapman JM, Clayton DG (2006) Improved power offered by a score test for linkage disequilibrium mapping of quantitative-trait loci by selective genotyping. Am J Hum Genet 78(3):498–504. doi:10.1086/500562
-
(2006)
Am J Hum Genet
, vol.78
, Issue.3
, pp. 498-504
-
-
Wallace, C.1
Chapman, J.M.2
Clayton, D.G.3
-
45
-
-
0003130336
-
Logistic regression of family data from case-control studies
-
Whittemore AS (1995) Logistic regression of family data from case-control studies. Biometrika 82:57–67
-
(1995)
Biometrika
, vol.82
, pp. 57-67
-
-
Whittemore, A.S.1
-
46
-
-
38049018997
-
Testing association for markers on the x chromosome
-
Zheng G, Joo J, Zhang C, Geller NL (2007) Testing association for markers on the x chromosome. Genet Epidemiol 31(8):834–843. doi:10.1002/gepi.20244
-
(2007)
Genet Epidemiol
, vol.31
, Issue.8
, pp. 834-843
-
-
Zheng, G.1
Joo, J.2
Zhang, C.3
Geller, N.L.4
-
47
-
-
78751490178
-
A comparison of approaches to account for uncertainty in analysis of imputed genotypes
-
Zheng J, Li Y, Scheet GRAP (2011) A comparison of approaches to account for uncertainty in analysis of imputed genotypes. Genet Epidemiol 35(2):102–110
-
(2011)
Genet Epidemiol
, vol.35
, Issue.2
, pp. 102-110
-
-
Zheng, J.1
Li, Y.2
Scheet, G.R.A.P.3
-
48
-
-
84862152665
-
Family-based association studies for next-generation sequencing
-
Zhu Y, Xiong M (2012) Family-based association studies for next-generation sequencing. Am J Hum Genet 90(6):1028–1045. doi:10.1016/j.ajhg.2012.04.022
-
(2012)
Am J Hum Genet
, vol.90
, Issue.6
, pp. 1028-1045
-
-
Zhu, Y.1
Xiong, M.2
|