메뉴 건너뛰기




Volumn 12, Issue 1, 2011, Pages 1-17

Methods for testing association between uncertain genotypes and quantitative traits

Author keywords

Genetic association; GWAS; Imputed genotypes; Statistical genetics; Uncertain genotypes

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENETICS; GENOTYPE; HUMAN; METHODOLOGY; QUANTITATIVE TRAIT; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS;

EID: 78650653311     PISSN: 14654644     EISSN: 14684357     Source Type: Journal    
DOI: 10.1093/biostatistics/kxq039     Document Type: Article
Times cited : (34)

References (42)
  • 2
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • BALDING, D. J. (2006). A tutorial on statistical methods for population association studies. Nature Reviews Genetics 7, 781-791.
    • (2006) Nature Reviews Genetics , vol.7 , pp. 781-791
    • Balding, D.J.1
  • 3
    • 33745279056 scopus 로고    scopus 로고
    • Evaluating coverage of genome-wide association studies
    • BARRETT, J. C. AND CARDON, L. R. (2006). Evaluating coverage of genome-wide association studies. Nature Genetics 38, 659-662.
    • (2006) Nature Genetics , vol.38 , pp. 659-662
    • Barrett, J.C.1    Cardon, L.R.2
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • BENJAMINI, Y. AND HOCHBERG, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B 57, 289-300.
    • (1995) Journal of the Royal Statistical Society, Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 0033237335 scopus 로고    scopus 로고
    • A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission
    • CLAYTON, D. (1999). A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission. American Journal of Human Genetics 65, 1170-1177.
    • (1999) American Journal of Human Genetics , vol.65 , pp. 1170-1177
    • Clayton, D.1
  • 10
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • DOI 10.1214/ss/1056397487
    • DUDOIT, S., SHAFFER, J. P. AND BOLDRICK, J. C. (2003). Multiple hypothesis testing in microarray experiments. Statistical Science 18, 71-103. (Pubitemid 41461823)
    • (2003) Statistical Science , vol.18 , Issue.1 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 13
    • 58149175796 scopus 로고    scopus 로고
    • Practical issues in imputation-based association mapping
    • GUAN, Y. AND STEPHENS, M. (2008). Practical issues in imputation-based association mapping. PLoS Genetics 4, e1000279.
    • (2008) PLoS Genetics , vol.4
    • Guan, Y.1    Stephens, M.2
  • 15
    • 67651222400 scopus 로고    scopus 로고
    • A fexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • HOWIE, B. N., DONNELLY, P. AND MARCHINI, J. (2009). A fexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genetics 5, e1000529.
    • (2009) PLoS Genetics , vol.5
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 16
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • INTERNATIONAL HAPMAP CONSORTIUM
    • INTERNATIONAL HAPMAP CONSORTIUM (2007). A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-862.
    • (2007) Nature , vol.449 , pp. 851-862
  • 18
    • 1542374065 scopus 로고    scopus 로고
    • Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms
    • KANG, H., QIN, Z. S., NIU, T. AND LIU, J. S. (2004). Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. American Journal of Human Genetics 74, 495-510.
    • (2004) American Journal of Human Genetics , vol.74 , pp. 495-510
    • Kang, H.1    Qin, Z.S.2    Niu, T.3    Liu, J.S.4
  • 19
    • 37549064336 scopus 로고    scopus 로고
    • Mach 1.0: Rapid haplotype reconstruction and missing genotype inference
    • LI, Y. AND ABECASIS, G. R. (2006). Mach 1.0: rapid haplotype reconstruction and missing genotype inference. American Journal of Human Genetics S79, 2290.
    • (2006) American Journal of Human Genetics , vol.S79 , pp. 2290
    • Y, L.I.1    Abecasis, G.R.2
  • 21
    • 40749159247 scopus 로고    scopus 로고
    • Simple and effcient analysis of disease association with missing genotype data
    • LIN, D. Y., HU, Y. AND HUANG, B. E. (2008). Simple and effcient analysis of disease association with missing genotype data. American Journal of Human Genetics 82, 444-452.
    • (2008) American Journal of Human Genetics , vol.82 , pp. 444-452
    • Lin, D.Y.1    Y, H.U.2    Huang, B.E.3
  • 23
    • 34347344976 scopus 로고    scopus 로고
    • A new multipoint method for genome-wide association studies by imputation of genotypes
    • MARCHINI, J., HOWIE, B., MYERS, S., MCVEAN, G. AND DONNELLY, P. (2007). A new multipoint method for genome-wide association studies by imputation of genotypes. Nature Genetics 39, 906-913.
    • (2007) Nature Genetics , vol.39 , pp. 906-913
    • Marchini, J.1    Howie, B.2    Myers, S.3    McVean, G.4    Donnelly, P.5
  • 26
    • 65249131713 scopus 로고    scopus 로고
    • Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes
    • NEJENTSEV, S., WALKER, N., RICHES, D., EGHOLM, M. AND TODD, J. A. (2009). Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes. Science 324, 387-389.
    • (2009) Science , vol.324 , pp. 387-389
    • Nejentsev, S.1    Walker, N.2    Riches, D.3    Egholm, M.4    Todd, J.A.5
  • 29
    • 56149105085 scopus 로고    scopus 로고
    • Analyses and comparison of accuracy of different genotype imputation methods
    • PEI, Y.-F., LI, J., ZHANG, L., PAPASIAN, C. J. AND DENG, H.-W. (2008). Analyses and comparison of accuracy of different genotype imputation methods. PLoS ONE 3, e3551.
    • (2008) PLoS ONE , vol.3
    • Pei, Y.-F.1    J, L.I.2    Zhang, L.3    Papasian, C.J.4    Deng, H.-W.5
  • 30
    • 34249693630 scopus 로고    scopus 로고
    • A method to address differential bias in genotyping in large-scale association studies
    • PLAGNOL, V., COOPER, J. D., TODD, J. A. AND CLAYTON, D. G. (2007). A method to address differential bias in genotyping in large-scale association studies. PLoS Genetics 3, e74.
    • (2007) PLoS Genetics , vol.3
    • Plagnol, V.1    Cooper, J.D.2    Todd, J.A.3    Clayton, D.G.4
  • 32
    • 0021404166 scopus 로고
    • Mixture densities, maximum likelihood and the em algorithm
    • REDNER, R. A. AND WALKER, H. F. (1984). Mixture densities, maximum likelihood and the EM algorithm. SIAM Review 26, 195-239.
    • (1984) SIAM Review , vol.26 , pp. 195-239
    • Redner, R.A.1    Walker, H.F.2
  • 34
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • SCHWARZ, G. (1978). Estimating the dimension of a model. Annals of Statistics 6, 461-464.
    • (1978) Annals of Statistics , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 35
    • 34547622688 scopus 로고    scopus 로고
    • Imputation-based analysis of association studies: Candidate regions and quantitative traits
    • SERVIN, B. AND STEPHENS, M. (2007). Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genetics 3, e114.
    • (2007) PLoS Genetics , vol.3
    • Servin, B.1    Stephens, M.2
  • 36
    • 70349303959 scopus 로고    scopus 로고
    • Bayesian statistical methods for genetic association studies
    • STEPHENS, M. AND BALDING, D. J. (2009). Bayesian statistical methods for genetic association studies. Nature Reviews Genetics 10, 681-690.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 681-690
    • Stephens, M.1    Balding, D.J.2
  • 37
    • 66049114148 scopus 로고    scopus 로고
    • Bayes factors for genome-wide association studies: Comparison with p-values
    • WAKEFIELD, J. (2009). Bayes factors for genome-wide association studies: comparison with p-values. Genetic Epidemiology 33, 79-86.
    • (2009) Genetic Epidemiology , vol.33 , pp. 79-86
    • Wakefield, J.1
  • 39
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • WELLCOME TRUST CASE CONTROL CONSORTIUM
    • WELLCOME TRUST CASE CONTROL CONSORTIUM (2007). Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447, 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 41
    • 23944477312 scopus 로고    scopus 로고
    • Asymptotic equivalence between two score tests for haplotype-specifc risk in general linear models
    • XIE, R. AND STRAM, D. O. (2005). Asymptotic equivalence between two score tests for haplotype-specifc risk in general linear models. Genetic Epidemiology 29, 166-170.
    • (2005) Genetic Epidemiology , vol.29 , pp. 166-170
    • Xie, R.1    Stram, D.O.2
  • 42
    • 0036284203 scopus 로고    scopus 로고
    • Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals
    • ZAYKIN, D. V., WESTFALL, P. H., YOUNG, S. S., KARNOUB, M. A., WAGNER, M. J. AND EHM, M. G. (2002). Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals. Human Heredity 53, 79-91.
    • (2002) Human Heredity , vol.53 , pp. 79-91
    • Zaykin, D.V.1    Westfall, P.H.2    Young, S.S.3    Karnoub, M.A.4    Wagner, M.J.5    Ehm, M.G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.