-
1
-
-
0028311921
-
-
Abu-Ashour J., Joy D.M., Lee H., Whiteley H.R., Zelin S. Transport of microorganisms through soil. Water, Air and Soil Pollution 1994, 75:141-158.
-
(1994)
Transport of microorganisms through soil. Water, Air and Soil Pollution
, vol.75
, pp. 141-158
-
-
Abu-Ashour, J.1
Joy, D.M.2
Lee, H.3
Whiteley, H.R.4
Zelin, S.5
-
2
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson M.J. A new method for non-parametric multivariate analysis of variance. Austral Ecology 2001, 26:32-46.
-
(2001)
Austral Ecology
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
5
-
-
79955057814
-
Examining the global distribution of dominant archaeal populations in soil
-
Bates S.T., Berg-Lyons D., Caporaso J.G., Walters W.A., Knight R., Fierer N. Examining the global distribution of dominant archaeal populations in soil. The ISME Journal 2011, 5:908-917.
-
(2011)
The ISME Journal
, vol.5
, pp. 908-917
-
-
Bates, S.T.1
Berg-Lyons, D.2
Caporaso, J.G.3
Walters, W.A.4
Knight, R.5
Fierer, N.6
-
6
-
-
84860483735
-
Next-generation sequencing reveals significant bacterial diversity of botrytized wine
-
Bokulich N.A., Joseph C.M., Allen G., Benson A.K., Mills D.A. Next-generation sequencing reveals significant bacterial diversity of botrytized wine. PLOS ONE 2012, 7:e36357.
-
(2012)
PLOS ONE
, vol.7
, pp. e36357
-
-
Bokulich, N.A.1
Joseph, C.M.2
Allen, G.3
Benson, A.K.4
Mills, D.A.5
-
7
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich N.A., Subramanian S., Faith J.J., Gevers D., Gordon J.I., Knight R., Mills D.A., Caporaso J.G. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods 2013, 10:57-59.
-
(2013)
Nature Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
Mills, D.A.7
Caporaso, J.G.8
-
8
-
-
84891933123
-
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
-
Bokulich N.A., Thorngate J.H., Richardson P.M., Mills D.A. Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate. Proceedings of the National Academy of Sciences Unites States America 2014, 111:E139-E148.
-
(2014)
Proceedings of the National Academy of Sciences Unites States America
, vol.111
, pp. E139-E148
-
-
Bokulich, N.A.1
Thorngate, J.H.2
Richardson, P.M.3
Mills, D.A.4
-
9
-
-
0034898780
-
The structure of microbial communities in soil and the lasting impact of cultivation
-
Buckley D.H., Schmidt T.M. The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecology 2001, 42:11-21.
-
(2001)
Microbial Ecology
, vol.42
, pp. 11-21
-
-
Buckley, D.H.1
Schmidt, T.M.2
-
11
-
-
75249107844
-
PyNAST: a flexible tool for aligning sequences to a template alignment
-
Caporaso J.G., Bittinger K., Bushman F.D., DeSantis T.Z., Andersen G.L., Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 2010, 26:266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
12
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., Fierer N., Peña A.G., Goodrich J.K., Gordon J.I., Huttley G.A., Kelley S.T., Knights D., Koenig J.E., Ley R.E., Lozupone C.A., McDonald D., Muegge B.D., Pirrung M., Reeder J., Sevinsky J.R., Turnbaugh P.J., Walters W.A., Widmann J., Yatsunenko T., Zaneveld J., Knight R. QIIME allows analysis of high-throughput community sequencing data. Nature Methods 2010, 7:335-336.
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
13
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso J.G., Lauber C.L., Walters W.A., Berg-Lyons D., Lozupone C.A., Turnbaugh P.J., Fierer N., Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences Unites States America 2011, 108:4516-4522.
-
(2011)
Proceedings of the National Academy of Sciences Unites States America
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
Fierer, N.7
Knight, R.8
-
14
-
-
33746452202
-
Effects of land use on soil respiration: conversion of oak woodlands to vineyards
-
Carlisle E.A., Steenwerth K.L., Smart D.R. Effects of land use on soil respiration: conversion of oak woodlands to vineyards. Journal of Environmental Quality 2006, 35:1396-1404.
-
(2006)
Journal of Environmental Quality
, vol.35
, pp. 1396-1404
-
-
Carlisle, E.A.1
Steenwerth, K.L.2
Smart, D.R.3
-
15
-
-
0001463548
-
Nonparametric estimation of the number of classes in a population
-
Chao A. Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics 1984, 11:265-270.
-
(1984)
Scandinavian Journal of Statistics
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
16
-
-
0027806622
-
A method of linking multivariate community structure to environmental variables
-
Clarke K.R., Ainsworth M. A method of linking multivariate community structure to environmental variables. Marine Ecology Progress Series 1993, 92:205-219.
-
(1993)
Marine Ecology Progress Series
, vol.92
, pp. 205-219
-
-
Clarke, K.R.1
Ainsworth, M.2
-
17
-
-
77949264819
-
Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization
-
Compant S., Clement C., Sessitsch A. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biology & Biochemistry 2010, 42:669-678.
-
(2010)
Soil Biology & Biochemistry
, vol.42
, pp. 669-678
-
-
Compant, S.1
Clement, C.2
Sessitsch, A.3
-
18
-
-
79960602562
-
Endophytes of grapevine flowers, berries, and seeds: identification of cultivable bacteria, comparison with other plant parts, and visualization of niches of colonization
-
Compant S., Mitter B., Colli-Mull J.G., Gangl H., Sessitsch A. Endophytes of grapevine flowers, berries, and seeds: identification of cultivable bacteria, comparison with other plant parts, and visualization of niches of colonization. Microbial Ecology 2011, 62:188-197.
-
(2011)
Microbial Ecology
, vol.62
, pp. 188-197
-
-
Compant, S.1
Mitter, B.2
Colli-Mull, J.G.3
Gangl, H.4
Sessitsch, A.5
-
19
-
-
84862644837
-
The 125th anniversary of the first postulation of the soil origin of endophytic bacteria - a tribute to M.L.V. Galippe
-
Compant S., Sessitsch A., Mathieu F. The 125th anniversary of the first postulation of the soil origin of endophytic bacteria - a tribute to M.L.V. Galippe. Plant and Soil 2012, 356:299-301.
-
(2012)
Plant and Soil
, vol.356
, pp. 299-301
-
-
Compant, S.1
Sessitsch, A.2
Mathieu, F.3
-
20
-
-
33745648311
-
The influence of season, agricultural management, and soil properties on gross nitrogen transformations and bacterial community structure
-
Cookson W.R., Marschner P., Clark I.M., Milton N., Smirk M.N., Murphy D.V., Osman M., Stockdale E.A., Hirsch P.R. The influence of season, agricultural management, and soil properties on gross nitrogen transformations and bacterial community structure. Australian Journal of Soil Research 2006, 44:453-465.
-
(2006)
Australian Journal of Soil Research
, vol.44
, pp. 453-465
-
-
Cookson, W.R.1
Marschner, P.2
Clark, I.M.3
Milton, N.4
Smirk, M.N.5
Murphy, D.V.6
Osman, M.7
Stockdale, E.A.8
Hirsch, P.R.9
-
21
-
-
0030843524
-
Soil development along an elevational transect in the western Sierra Nevada, California
-
Dahlgren R.A., Boettinger J.L., Huntington G.L., Amundson R.G. Soil development along an elevational transect in the western Sierra Nevada, California. Geoderma 1997, 78:207-236.
-
(1997)
Geoderma
, vol.78
, pp. 207-236
-
-
Dahlgren, R.A.1
Boettinger, J.L.2
Huntington, G.L.3
Amundson, R.G.4
-
22
-
-
33644845577
-
'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say?
-
De Wit R., Bouvier T. 'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say?. Environmental Microbiology 2006, 8:755-758.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 755-758
-
-
De Wit, R.1
Bouvier, T.2
-
23
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis T.Z., Hugenholtz P., Larsen N., Rojas M., Brodie E.L., Keller K., Huber T., Dalevi D., Hu P., Andersen G.L. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 2006, 72:5069-5072.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
24
-
-
72449159143
-
Land use and climatic factors structure regional patterns in soil microbial communities
-
Drenovsky R.E., Steenwerth K.L., Jackson L.E., Scow K.M. Land use and climatic factors structure regional patterns in soil microbial communities. Global Ecology and Biogeography 2010, 19:27-39.
-
(2010)
Global Ecology and Biogeography
, vol.19
, pp. 27-39
-
-
Drenovsky, R.E.1
Steenwerth, K.L.2
Jackson, L.E.3
Scow, K.M.4
-
25
-
-
13844257500
-
Soil water content and organic carbon availability are major determinants of soil microbial community composition
-
Drenovsky R.E., Vo D., Graham K.J., Scow K.M. Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microbial Ecology 2004, 48:424-430.
-
(2004)
Microbial Ecology
, vol.48
, pp. 424-430
-
-
Drenovsky, R.E.1
Vo, D.2
Graham, K.J.3
Scow, K.M.4
-
26
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
27
-
-
0026499429
-
Conservation evaluation and phylogenetic diversity
-
Faith D.P. Conservation evaluation and phylogenetic diversity. Biological Conservation 1992, 61:1-10.
-
(1992)
Biological Conservation
, vol.61
, pp. 1-10
-
-
Faith, D.P.1
-
28
-
-
66149139900
-
Microbial biogeography: patterns in microbial diversity across space and time
-
American Society for Microbiology, Washington, DC, USA, K. Zengler (Ed.)
-
Fierer N. Microbial biogeography: patterns in microbial diversity across space and time. Accessing Uncultivated Microorganisms: From the Environment to Organisms and Genomes and Back 2008, 95-115. American Society for Microbiology, Washington, DC, USA. K. Zengler (Ed.).
-
(2008)
Accessing Uncultivated Microorganisms: From the Environment to Organisms and Genomes and Back
, pp. 95-115
-
-
Fierer, N.1
-
29
-
-
33947236971
-
Toward an ecological classification of soil bacteria
-
Fierer N., Bradford M.A., Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
-
(2007)
Ecology
, vol.88
, pp. 1354-1364
-
-
Fierer, N.1
Bradford, M.A.2
Jackson, R.B.3
-
31
-
-
84859911168
-
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
-
Fierer N., Lauber C.L., Ramirez K.S., Zaneveld J., Bradford M.A., Knight R. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients. The ISME Journal 2012, 6:1007-1017.
-
(2012)
The ISME Journal
, vol.6
, pp. 1007-1017
-
-
Fierer, N.1
Lauber, C.L.2
Ramirez, K.S.3
Zaneveld, J.4
Bradford, M.A.5
Knight, R.6
-
35
-
-
4744340843
-
Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness
-
Garbeva P., van Veen J.A., van Elsas J.D. Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology 2004, 42:243-270.
-
(2004)
Annual Review of Phytopathology
, vol.42
, pp. 243-270
-
-
Garbeva, P.1
van Veen, J.A.2
van Elsas, J.D.3
-
37
-
-
52949148223
-
Molecular C dynamics downstream: the biochemical decomposition sequence and its impact on soil organic matter structure and function
-
Grandy A.S., Neff J.C. Molecular C dynamics downstream: the biochemical decomposition sequence and its impact on soil organic matter structure and function. Science of The Total Environment 2008, 404:297-307.
-
(2008)
Science of The Total Environment
, vol.404
, pp. 297-307
-
-
Grandy, A.S.1
Neff, J.C.2
-
39
-
-
53049086655
-
Properties of bacterial endophytes and their proposed role in plant growth
-
Hardoim P.R., van Overbeek L.S., van Elsas J.D. Properties of bacterial endophytes and their proposed role in plant growth. Trends in Microbiology 2008, 16:463-471.
-
(2008)
Trends in Microbiology
, vol.16
, pp. 463-471
-
-
Hardoim, P.R.1
van Overbeek, L.S.2
van Elsas, J.D.3
-
41
-
-
33845724686
-
Is microbial community composition in boreal forest soils determined by pH, C-to-N ratio, the trees, or all three?
-
Hogberg M.N., Hogberg P., Myrold D.D. Is microbial community composition in boreal forest soils determined by pH, C-to-N ratio, the trees, or all three?. Oecologia 2007, 150:590-601.
-
(2007)
Oecologia
, vol.150
, pp. 590-601
-
-
Hogberg, M.N.1
Hogberg, P.2
Myrold, D.D.3
-
42
-
-
84930904301
-
Using GRASS and R for landscape regionalization through PAM cluster analysis
-
Hollander A.D. Using GRASS and R for landscape regionalization through PAM cluster analysis. OSGeo Journal 2012, 10:26-31.
-
(2012)
OSGeo Journal
, vol.10
, pp. 26-31
-
-
Hollander, A.D.1
-
43
-
-
0004059979
-
-
McGraw-Hill Book Company, Inc., New York, NY, USA
-
Jenny H. Factors of Soil Formation: a System of Quantitative Pedology 1941, McGraw-Hill Book Company, Inc., New York, NY, USA, 281 pp.
-
(1941)
Factors of Soil Formation: a System of Quantitative Pedology
, pp. 281
-
-
Jenny, H.1
-
44
-
-
33646095202
-
Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil
-
Jones D.L., Willett V.B. Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil. Soil Biology & Biochemistry 2006, 38:991-999.
-
(2006)
Soil Biology & Biochemistry
, vol.38
, pp. 991-999
-
-
Jones, D.L.1
Willett, V.B.2
-
45
-
-
0003430544
-
-
Wiley, New York, NY, USA
-
Kaufman L., Rousseeuw P.J. Finding Groups in Data: an Introduction to Cluster Analysis 1990, Wiley, New York, NY, USA, 342 pp.
-
(1990)
Finding Groups in Data: an Introduction to Cluster Analysis
, pp. 342
-
-
Kaufman, L.1
Rousseeuw, P.J.2
-
46
-
-
0001990469
-
Re-examination of the determination of ammonium as the indophenol blue complex using salicylate
-
Kempers A.J., Kok C.J. Re-examination of the determination of ammonium as the indophenol blue complex using salicylate. Analytica Chimica Acta 1989, 221:147-155.
-
(1989)
Analytica Chimica Acta
, vol.221
, pp. 147-155
-
-
Kempers, A.J.1
Kok, C.J.2
-
47
-
-
0036159340
-
The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter
-
Kögel-Knabner I. The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biology & Biochemistry 2002, 34:139-162.
-
(2002)
Soil Biology & Biochemistry
, vol.34
, pp. 139-162
-
-
Kögel-Knabner, I.1
-
48
-
-
58149524856
-
Comments on the paper by Kemmitt et al. (2008) 'Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass - a new perspective' [Soil Biology & Biochemistry 40, 61-73]: The biology of the Regulatory Gate
-
Kuzyakov Y., Blagodatskaya E., Blagodatsky S. Comments on the paper by Kemmitt et al. (2008) 'Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass - a new perspective' [Soil Biology & Biochemistry 40, 61-73]: The biology of the Regulatory Gate. Soil Biology & Biochemistry 2009, 41:435-439.
-
(2009)
Soil Biology & Biochemistry
, vol.41
, pp. 435-439
-
-
Kuzyakov, Y.1
Blagodatskaya, E.2
Blagodatsky, S.3
-
49
-
-
0004415067
-
-
United States Department of Agriculture, Soil Conservation Service, in cooperation with University of California Agricultural Experiment Station
-
Lambert G., Kashiwagi J.H. Soil Survey of Napa County, California 1978, United States Department of Agriculture, Soil Conservation Service, in cooperation with University of California Agricultural Experiment Station.
-
(1978)
Soil Survey of Napa County, California
-
-
Lambert, G.1
Kashiwagi, J.H.2
-
50
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
51
-
-
84863274509
-
Tillage effects on spatiotemporal variability of particulate organic matter
-
Lee J., Laca E.A., van Kessel C., Rolston D.E., Hopmans J.W., Six J. Tillage effects on spatiotemporal variability of particulate organic matter. Applied and Environmental Soil Science 2009, 2009:1-14.
-
(2009)
Applied and Environmental Soil Science
, vol.2009
, pp. 1-14
-
-
Lee, J.1
Laca, E.A.2
van Kessel, C.3
Rolston, D.E.4
Hopmans, J.W.5
Six, J.6
-
52
-
-
80053417123
-
Grapevine microbiomics: bacterial diversity on grape leaves and berries revealed by high-throughput sequence analysis of 16S rRNA amplicons
-
Leveau J.H.J., Tech J.J. Grapevine microbiomics: bacterial diversity on grape leaves and berries revealed by high-throughput sequence analysis of 16S rRNA amplicons. Acta Horticulturae 2011, 905:31-42.
-
(2011)
Acta Horticulturae
, vol.905
, pp. 31-42
-
-
Leveau, J.H.J.1
Tech, J.J.2
-
53
-
-
84891895219
-
High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China
-
Liu J., Sui Y., Yu Z., Shi Y., Chu H., Jin J., Liu X., Wang G. High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China. Soil Biology & Biochemistry 2014, 70:113-122.
-
(2014)
Soil Biology & Biochemistry
, vol.70
, pp. 113-122
-
-
Liu, J.1
Sui, Y.2
Yu, Z.3
Shi, Y.4
Chu, H.5
Jin, J.6
Liu, X.7
Wang, G.8
-
54
-
-
35549007148
-
Short pyrosequencing reads suffice for accurate microbial community analysis
-
Liu Z., Lozupone C., Hamady M., Bushman F.D., Knight R. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Research 2007, 35:e120.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. e120
-
-
Liu, Z.1
Lozupone, C.2
Hamady, M.3
Bushman, F.D.4
Knight, R.5
-
55
-
-
80052638464
-
Soil-specific limitations for acccess and analysis of soil microbial communities by metagenomics
-
Lombard N., Prestat E., van Elsas J.D., Simonet P. Soil-specific limitations for acccess and analysis of soil microbial communities by metagenomics. FEMS Microbiology Ecology 2011, 78:31-49.
-
(2011)
FEMS Microbiology Ecology
, vol.78
, pp. 31-49
-
-
Lombard, N.1
Prestat, E.2
van Elsas, J.D.3
Simonet, P.4
-
56
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 2005, 71:8228-8235.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
57
-
-
17844366280
-
Identifying microorganisms responsible for ecologically significant biogeochemical processes
-
Madsen E.L. Identifying microorganisms responsible for ecologically significant biogeochemical processes. Nature Reviews Microbiology 2005, 3:439-446.
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 439-446
-
-
Madsen, E.L.1
-
58
-
-
84883440328
-
Characterization of epiphytic bacterial communities from grapes, leaves, bark and soil of grapevine plants grown, and their relations
-
Martins G., Lauga B., Miot-Sertier C., Mercier A., Lonvaud A., Soulas M.-L., Soulas G., Masneuf-Pomarède I. Characterization of epiphytic bacterial communities from grapes, leaves, bark and soil of grapevine plants grown, and their relations. PLOS ONE 2013, 8:e73013.
-
(2013)
PLOS ONE
, vol.8
, pp. e73013
-
-
Martins, G.1
Lauga, B.2
Miot-Sertier, C.3
Mercier, A.4
Lonvaud, A.5
Soulas, M.-L.6
Soulas, G.7
Masneuf-Pomarède, I.8
-
59
-
-
84865150043
-
Grape berry bacterial microbiota: impact of the ripening process and the farming system
-
Martins G., Miot-Sertier C., Lauga B., Claisse O., Lonvaud-Funel A., Soulas G., Masneuf-Pomarede I. Grape berry bacterial microbiota: impact of the ripening process and the farming system. International Journal of Food Microbiology 2012, 158:93-100.
-
(2012)
International Journal of Food Microbiology
, vol.158
, pp. 93-100
-
-
Martins, G.1
Miot-Sertier, C.2
Lauga, B.3
Claisse, O.4
Lonvaud-Funel, A.5
Soulas, G.6
Masneuf-Pomarede, I.7
-
60
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny J.B.H., Bohannan B.J.M., Brown J.H., Colwell R.K., Fuhrman J.A., Green J.L., Horner-Devine M.C., Kane M., Krumins J.A., Kuske C.R., Morin P.J., Naeem S., Øvreås L., Reysenbach A.L., Smith V.H., Staley J.T. Microbial biogeography: putting microorganisms on the map. Nature Reviews Microbiology 2006, 4:102-112.
-
(2006)
Nature Reviews Microbiology
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Øvreås, L.13
Reysenbach, A.L.14
Smith, V.H.15
Staley, J.T.16
-
61
-
-
0038307495
-
-
MjM Software Design, Gleneden Beach, OR, USA
-
McCune B., Grace J.B. Analysis of Ecological Communities 2006, MjM Software Design, Gleneden Beach, OR, USA.
-
(2006)
Analysis of Ecological Communities
-
-
McCune, B.1
Grace, J.B.2
-
62
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D., Price M.N., Goodrich J., Nawrocki E.P., DeSantis T.Z., Probst A., Andersen G.L., Knight R., Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME Journal 2012, 6:610-618.
-
(2012)
The ISME Journal
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
63
-
-
0023519385
-
An evaluation of the relative robustness of techniques for ecological ordination
-
Minchin P.R. An evaluation of the relative robustness of techniques for ecological ordination. Vegetatio 1987, 69:89-107.
-
(1987)
Vegetatio
, vol.69
, pp. 89-107
-
-
Minchin, P.R.1
-
64
-
-
0035709008
-
A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite
-
Miranda K.M., Espey M.G., Wink D.A. A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite. Nitric Oxide 2001, 5:62-71.
-
(2001)
Nitric Oxide
, vol.5
, pp. 62-71
-
-
Miranda, K.M.1
Espey, M.G.2
Wink, D.A.3
-
65
-
-
84879257619
-
Advances in elucidating beneficial interactions between plants, soil, and bacteria
-
Elsevier Academic Press, Inc., San Diego, CA, USA
-
Mitter B., Brader G., Afzal M., Compant S., Naveed M., Trognitz F., Sessitsch A. Advances in elucidating beneficial interactions between plants, soil, and bacteria. Advances in Agronomy 2013, vol. 121:381-445. Elsevier Academic Press, Inc., San Diego, CA, USA.
-
(2013)
Advances in Agronomy
, vol.121
, pp. 381-445
-
-
Mitter, B.1
Brader, G.2
Afzal, M.3
Compant, S.4
Naveed, M.5
Trognitz, F.6
Sessitsch, A.7
-
66
-
-
47949098688
-
Drivers of change in ecosystem condition and services
-
Island Press, Washington, DC, USA, S.R. Carpenter, P.L. Pingali, E.M. Bennett, M.B. Zurek (Eds.)
-
Nelson G.C., Bennett E., Berhe A.A., Cassman K.G., DeFries R., Dietz T., Dobson A., Dobermann A., Janetos A., Levy M., Marco D., Nakićenović N., O'Neill B., Norgaard R., Petschel-Held G., Ojima D., Pingali P., Watson R., Zurek M. Drivers of change in ecosystem condition and services. Ecosystems and Human Well-Being: Scenarios: Findings of the Scenarios Working Group (Millennium Ecosystem Assessment Series) 2005, 173-222. Island Press, Washington, DC, USA. S.R. Carpenter, P.L. Pingali, E.M. Bennett, M.B. Zurek (Eds.).
-
(2005)
Ecosystems and Human Well-Being: Scenarios: Findings of the Scenarios Working Group (Millennium Ecosystem Assessment Series)
, pp. 173-222
-
-
Nelson, G.C.1
Bennett, E.2
Berhe, A.A.3
Cassman, K.G.4
DeFries, R.5
Dietz, T.6
Dobson, A.7
Dobermann, A.8
Janetos, A.9
Levy, M.10
Marco, D.11
Nakićenović, N.12
O'Neill, B.13
Norgaard, R.14
Petschel-Held, G.15
Ojima, D.16
Pingali, P.17
Watson, R.18
Zurek, M.19
-
67
-
-
70349255569
-
-
R package version 2.0-10
-
Oksanen J., Blanchet F.G., Kindt R., Legendre P., Minchin P.R., O'Hara R.B., Simpson G.L., Solymos P., Stevens M.H.H., Wagner H. vegan: Community Ecology Package 2013, R package version 2.0-10. http://CRAN.R-project.org/package=vegan.
-
(2013)
vegan: Community Ecology Package
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
68
-
-
0000366797
-
Elemental organic analysis. Part 1. Historical developments
-
Pella E. Elemental organic analysis. Part 1. Historical developments. American Laboratory 1990, 22(2):116-125.
-
(1990)
American Laboratory
, vol.22
, Issue.2
, pp. 116-125
-
-
Pella, E.1
-
69
-
-
0000366798
-
Elemental organic analysis. Part 2. State of the art
-
Pella E. Elemental organic analysis. Part 2. State of the art. American Laboratory 1990, 22(12):28-32.
-
(1990)
American Laboratory
, vol.22
, Issue.12
, pp. 28-32
-
-
Pella, E.1
-
70
-
-
84869882501
-
Physical, chemical, and biochemical mechanisms of soil organic matter stabilization under conservation tillage systems: a central role for microbes and microbial by-products in C sequestration
-
Plaza C., Courtier-Murias D., Fernández J.M., Polo A., Simpson A.J. Physical, chemical, and biochemical mechanisms of soil organic matter stabilization under conservation tillage systems: a central role for microbes and microbial by-products in C sequestration. Soil Biology & Biochemistry 2013, 57:124-134.
-
(2013)
Soil Biology & Biochemistry
, vol.57
, pp. 124-134
-
-
Plaza, C.1
Courtier-Murias, D.2
Fernández, J.M.3
Polo, A.4
Simpson, A.J.5
-
71
-
-
77949718257
-
FastTree 2 - approximately maximum-likelihood trees for large alignments
-
Price M.N., Dehal P.S., Arkin A.P. FastTree 2 - approximately maximum-likelihood trees for large alignments. PLOS ONE 2010, 5:e9490.
-
(2010)
PLOS ONE
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
72
-
-
84942519322
-
-
U.S. Department of Agriculture, Natural Resources Conservation Service, National Geospatial Management Center, Fort Worth, Texas
-
PRISM Climate Group, Oregon State University 1981-2010 Annual Average Raster Precip and Temp 2012, U.S. Department of Agriculture, Natural Resources Conservation Service, National Geospatial Management Center, Fort Worth, Texas. http://datagateway.nrcs.usda.gov/.
-
(2012)
1981-2010 Annual Average Raster Precip and Temp
-
-
-
74
-
-
84884699715
-
Review: soil biological properties as indicators of soil quality in Australian viticulture
-
Riches D., Porter I.J., Oliver D.P., Bramley R.G.V., Rawnsley B., Edwards J., White R.E. Review: soil biological properties as indicators of soil quality in Australian viticulture. Australian Journal of Grape and Wine Research 2013, 19:311-323.
-
(2013)
Australian Journal of Grape and Wine Research
, vol.19
, pp. 311-323
-
-
Riches, D.1
Porter, I.J.2
Oliver, D.P.3
Bramley, R.G.V.4
Rawnsley, B.5
Edwards, J.6
White, R.E.7
-
77
-
-
84856976594
-
-
USDA NRCS National Geospatial Management Center, Fort Worth, Texas
-
Soil Survey Staff, Natural Resources Conservation Service (NRCS), United States Department of Agriculture (USDA) Soil Survey Geographic Database (SSURGO) 2010-2013, USDA NRCS National Geospatial Management Center, Fort Worth, Texas. http://datagateway.nrcs.usda.gov/.
-
(2010)
Soil Survey Geographic Database (SSURGO)
-
-
-
80
-
-
5344244786
-
Influence of climate, soil, and cultivar on terroir
-
van Leeuwen C., Friant P., Chone X., Tregoat O., Koundouras S., Dubourdieu D. Influence of climate, soil, and cultivar on terroir. American Journal of Enology and Viticulture 2004, 55:207-217.
-
(2004)
American Journal of Enology and Viticulture
, vol.55
, pp. 207-217
-
-
van, L.C.1
Friant, P.2
Chone, X.3
Tregoat, O.4
Koundouras, S.5
Dubourdieu, D.6
-
81
-
-
84884698830
-
Vinecology: pairing wine with nature
-
Viers J.H., Williams J.N., Nicholas K.A., Barbosa O., Kotzé I., Spence L., Webb L.B., Merenlender A., Reynolds M. Vinecology: pairing wine with nature. Conservation Letters 2013, 6:287-299.
-
(2013)
Conservation Letters
, vol.6
, pp. 287-299
-
-
Viers, J.H.1
Williams, J.N.2
Nicholas, K.A.3
Barbosa, O.4
Kotzé, I.5
Spence, L.6
Webb, L.B.7
Merenlender, A.8
Reynolds, M.9
-
82
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 2007, 73:5261-5267.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
83
-
-
0001341936
-
Ammonium production in soil under waterlogged conditions as index of nitrogen availability
-
Waring S.A., Bremner J.M. Ammonium production in soil under waterlogged conditions as index of nitrogen availability. Nature 1964, 201:951-952.
-
(1964)
Nature
, vol.201
, pp. 951-952
-
-
Waring, S.A.1
Bremner, J.M.2
-
84
-
-
84355166737
-
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
-
Werner J.J., Koren O., Hugenholtz P., DeSantis T.Z., Walters W.A., Caporaso J.G., Angenent L.T., Knight R., Ley R.E. Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. The ISME Journal 2012, 6:94-103.
-
(2012)
The ISME Journal
, vol.6
, pp. 94-103
-
-
Werner, J.J.1
Koren, O.2
Hugenholtz, P.3
DeSantis, T.Z.4
Walters, W.A.5
Caporaso, J.G.6
Angenent, L.T.7
Knight, R.8
Ley, R.E.9
-
85
-
-
84928797120
-
The soil microbiome influences grapevine-associated microbiota
-
e02527-02514
-
Zarraonaindia I., Owens S.M., Weisenhorn P., West K., Hampton-Marcell J., Lax S., Bokulich N.A., Mills D.A., Martin G., Taghavi S., van der Lelie D., Gilbert J.A. The soil microbiome influences grapevine-associated microbiota. mBio 2015, 6. e02527-02514.
-
(2015)
mBio
, vol.6
-
-
Zarraonaindia, I.1
Owens, S.M.2
Weisenhorn, P.3
West, K.4
Hampton-Marcell, J.5
Lax, S.6
Bokulich, N.A.7
Mills, D.A.8
Martin, G.9
Taghavi, S.10
van der Lelie, D.11
Gilbert, J.A.12
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