메뉴 건너뛰기




Volumn 70, Issue , 2014, Pages 113-122

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

Author keywords

Bacterial diversity; Latitudinal diversity gradient; Mollisols; Soil carbon content; Soil microbial biomass; Soil pH

Indexed keywords

BACTERIAL DIVERSITY; MOLLISOLS; SOIL CARBON; SOIL MICROBIAL BIOMASS; SOIL PH;

EID: 84891895219     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.12.014     Document Type: Article
Times cited : (501)

References (56)
  • 1
    • 53449086190 scopus 로고    scopus 로고
    • Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
    • Acosta-Martínez V., Dowd S., Sun Y., Allen V. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biology & Biochemistry 2008, 40:2762-2770.
    • (2008) Soil Biology & Biochemistry , vol.40 , pp. 2762-2770
    • Acosta-Martínez, V.1    Dowd, S.2    Sun, Y.3    Allen, V.4
  • 4
    • 78349260124 scopus 로고    scopus 로고
    • Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
    • Chu H.Y., Fierer N., Lauber C.L., Caporaso J.G., Knight R., Grogan P. Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. Environmental Microbiology 2010, 12:2998-3006.
    • (2010) Environmental Microbiology , vol.12 , pp. 2998-3006
    • Chu, H.Y.1    Fierer, N.2    Lauber, C.L.3    Caporaso, J.G.4    Knight, R.5    Grogan, P.6
  • 5
    • 0035816173 scopus 로고    scopus 로고
    • Afurther biodiversity index applicable to species lists: variation in taxonomic distinctness
    • Clarke K.R., Warwick R.M. Afurther biodiversity index applicable to species lists: variation in taxonomic distinctness. Marine Ecology Progress Series 2001, 216:265-278.
    • (2001) Marine Ecology Progress Series , vol.216 , pp. 265-278
    • Clarke, K.R.1    Warwick, R.M.2
  • 6
    • 20444493571 scopus 로고    scopus 로고
    • The contribution of soil organic matter fractions to carbon and nitrogen mineralization and microbial community size and structure
    • Cookson W.R., Abaye D.A., Marschner P., Murphy D.V., Stockdale E.A., Goulding K.W.T. The contribution of soil organic matter fractions to carbon and nitrogen mineralization and microbial community size and structure. Soil Biology & Biochemistry 2005, 37:1726-1737.
    • (2005) Soil Biology & Biochemistry , vol.37 , pp. 1726-1737
    • Cookson, W.R.1    Abaye, D.A.2    Marschner, P.3    Murphy, D.V.4    Stockdale, E.A.5    Goulding, K.W.T.6
  • 7
    • 1642376424 scopus 로고    scopus 로고
    • Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time
    • Crump B.C., Hopkinson C.S., Sogin M.L., Hobbie J.E. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Applied and Environmental Microbiology 2004, 70:1494-1505.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 1494-1505
    • Crump, B.C.1    Hopkinson, C.S.2    Sogin, M.L.3    Hobbie, J.E.4
  • 8
    • 67149144216 scopus 로고    scopus 로고
    • Assessment of the diversity, abundance, and ecological distribution of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity
    • Davis J.P., Youssef N.H., Elshahed M.S. Assessment of the diversity, abundance, and ecological distribution of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity. Applied and Environmental Microbiology 2009, 75:4139-4148.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 4139-4148
    • Davis, J.P.1    Youssef, N.H.2    Elshahed, M.S.3
  • 9
    • 33644845577 scopus 로고    scopus 로고
    • 'Everything is everywhere, but, the environment select'; what did Baas Becking and Beijerinck really say?
    • De Wit R., Bouvier T. 'Everything is everywhere, but, the environment select'; what did Baas Becking and Beijerinck really say?. Environmental Microbiology 2006, 8:755-758.
    • (2006) Environmental Microbiology , vol.8 , pp. 755-758
    • De Wit, R.1    Bouvier, T.2
  • 10
    • 77952484804 scopus 로고    scopus 로고
    • Relationship between soil properties and patterns of bacterial β-diversity across reclaimed and natural boreal forest soils
    • Dimitriu P.A., Grayston S.J. Relationship between soil properties and patterns of bacterial β-diversity across reclaimed and natural boreal forest soils. Microbial Ecology 2010, 59:563-573.
    • (2010) Microbial Ecology , vol.59 , pp. 563-573
    • Dimitriu, P.A.1    Grayston, S.J.2
  • 11
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm J.C., Lottaz C., Borodina T., Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Research 2008, 36:1-10.
    • (2008) Nucleic Acids Research , vol.36 , pp. 1-10
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 12
    • 77950596380 scopus 로고    scopus 로고
    • Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil
    • Eilers K.G., Lauber C.L., Knight R., Fierer N. Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil. Soil Biology & Biochemistry 2010, 42:896-903.
    • (2010) Soil Biology & Biochemistry , vol.42 , pp. 896-903
    • Eilers, K.G.1    Lauber, C.L.2    Knight, R.3    Fierer, N.4
  • 14
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith D.P. Conservation evaluation and phylogenetic diversity. Biological Conservation 1992, 61:1-10.
    • (1992) Biological Conservation , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 15
    • 71649105829 scopus 로고    scopus 로고
    • The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework
    • Faith D.P., Lozupone C.A., Nipperess D., Knight R. The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework. The International Journal of Molecular Sciences 2009, 10:4723-4741.
    • (2009) The International Journal of Molecular Sciences , vol.10 , pp. 4723-4741
    • Faith, D.P.1    Lozupone, C.A.2    Nipperess, D.3    Knight, R.4
  • 16
    • 0030755137 scopus 로고    scopus 로고
    • Local versus global diversity of microorganisms: cryptic diversity of ciliated protozoa
    • Fenchel T., Esteban G.F., Finlay B.J. Local versus global diversity of microorganisms: cryptic diversity of ciliated protozoa. Oikos 1997, 80:220-225.
    • (1997) Oikos , vol.80 , pp. 220-225
    • Fenchel, T.1    Esteban, G.F.2    Finlay, B.J.3
  • 17
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer N., Bradford M.A., Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 20
    • 0033607024 scopus 로고    scopus 로고
    • Ubiquitous dispersal of microbial species
    • Finlay B.J., Clarke K.J. Ubiquitous dispersal of microbial species. Nature 1999, 400:828.
    • (1999) Nature , vol.400 , pp. 828
    • Finlay, B.J.1    Clarke, K.J.2
  • 21
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay B.J. Global dispersal of free-living microbial eukaryote species. Science 2002, 296:1061-1063.
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 25
    • 4744340843 scopus 로고    scopus 로고
    • Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness
    • Garbeva P., Veen J.A.V., Elsas J.D.V. Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology 2004, 42:243-270.
    • (2004) Annual Review of Phytopathology , vol.42 , pp. 243-270
    • Garbeva, P.1    Veen, J.A.V.2    Elsas, J.D.V.3
  • 26
    • 40249113897 scopus 로고    scopus 로고
    • Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?
    • Ge Y., He J.Z., Zhu Y.G., Zhang J.B., Xu Z., Zhang L.M., Zheng Y.M. Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?. The ISME Journal 2008, 2:254-264.
    • (2008) The ISME Journal , vol.2 , pp. 254-264
    • Ge, Y.1    He, J.Z.2    Zhu, Y.G.3    Zhang, J.B.4    Xu, Z.5    Zhang, L.M.6    Zheng, Y.M.7
  • 27
    • 44449118067 scopus 로고    scopus 로고
    • Microbial biogeography: from taxonomy to traits
    • Green J.L., Bohannan B.J.L., Whitaker R.J. Microbial biogeography: from taxonomy to traits. Science 2008, 320:1039-1042.
    • (2008) Science , vol.320 , pp. 1039-1042
    • Green, J.L.1    Bohannan, B.J.L.2    Whitaker, R.J.3
  • 29
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: tools, techniques, and challenges
    • Hamady M., Knight R. Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Research 2009, 19:1141-1152.
    • (2009) Genome Research , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 30
    • 0034946147 scopus 로고    scopus 로고
    • Body size determines the strength of the latitudinal diversity gradient
    • Hillebrand H., Azovsky A.I. Body size determines the strength of the latitudinal diversity gradient. Ecography 2001, 24:251-256.
    • (2001) Ecography , vol.24 , pp. 251-256
    • Hillebrand, H.1    Azovsky, A.I.2
  • 32
    • 0000469530 scopus 로고
    • Interactions of bacteria, fungi, and their nematode grazers: effects on nutrient cycling and plant growth
    • Ingham R.E., Trofymow J.A., Ingham E.R., Coleman D.C. Interactions of bacteria, fungi, and their nematode grazers: effects on nutrient cycling and plant growth. Ecological Monographs 1985, 55:119-140.
    • (1985) Ecological Monographs , vol.55 , pp. 119-140
    • Ingham, R.E.1    Trofymow, J.A.2    Ingham, E.R.3    Coleman, D.C.4
  • 34
    • 63349105158 scopus 로고    scopus 로고
    • Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
    • Jones R.T., Robeson M.S., Lauber C.L., Hamady M., Knight R., Fierer N. Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. The ISME Journal 2009, 3:442-453.
    • (2009) The ISME Journal , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5    Fierer, N.6
  • 35
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 36
    • 49249124904 scopus 로고    scopus 로고
    • The influence of soil properties on the structure of bacterial and fungal communities across land-use types
    • Lauber C.L., Strickland M.S., Bradford M.A., Fierer N. The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology & Biochemistry 2008, 40:2407-2415.
    • (2008) Soil Biology & Biochemistry , vol.40 , pp. 2407-2415
    • Lauber, C.L.1    Strickland, M.S.2    Bradford, M.A.3    Fierer, N.4
  • 37
    • 0027101175 scopus 로고
    • The problem of pattern and scale in ecology
    • Levin S. The problem of pattern and scale in ecology. Ecology 1992, 73:1943-1967.
    • (1992) Ecology , vol.73 , pp. 1943-1967
    • Levin, S.1
  • 39
    • 45949104745 scopus 로고    scopus 로고
    • Distribution of soil enzyme activities and microbial biomass along a latitudinal gradient in farmlands of Songliao plain, northeast China
    • Liu X.M., Li Q., Liang W.J., Jiang Y. Distribution of soil enzyme activities and microbial biomass along a latitudinal gradient in farmlands of Songliao plain, northeast China. Pedosphere 2008, 18:431-440.
    • (2008) Pedosphere , vol.18 , pp. 431-440
    • Liu, X.M.1    Li, Q.2    Liang, W.J.3    Jiang, Y.4
  • 41
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 2005, 71:8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 42
    • 84877151039 scopus 로고    scopus 로고
    • Comparison of microbial community structures in four black soils along a climatic gradient in northeast China
    • Mi L., Wang G., Jin J., Sui Y., Liu J., Liu X. Comparison of microbial community structures in four black soils along a climatic gradient in northeast China. Canadian Journal of Soil Science 2012, 92:543-549.
    • (2012) Canadian Journal of Soil Science , vol.92 , pp. 543-549
    • Mi, L.1    Wang, G.2    Jin, J.3    Sui, Y.4    Liu, J.5    Liu, X.6
  • 43
    • 33846222279 scopus 로고    scopus 로고
    • Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH dependent
    • Männistö M.K., Tiirola M., Häggblom M.M. Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH dependent. FEMS Microbiology Ecology 2007, 59:452-465.
    • (2007) FEMS Microbiology Ecology , vol.59 , pp. 452-465
    • Männistö, M.K.1    Tiirola, M.2    Häggblom, M.M.3
  • 44
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
    • Nicol G.W., Leininger S., Schleper C., Prosser J.I. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environmental Microbiology 2008, 10:2966-2978.
    • (2008) Environmental Microbiology , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 45
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team R 21. Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team R, a Language and Environment for Statistical Computing 2006, R 21. Foundation for Statistical Computing, Vienna, Austria.
    • (2006) R, a Language and Environment for Statistical Computing
  • 46
    • 33847327474 scopus 로고    scopus 로고
    • Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
    • Ramette A., Tiedje J.M. Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microbial Ecology 2007, 53:197-207.
    • (2007) Microbial Ecology , vol.53 , pp. 197-207
    • Ramette, A.1    Tiedje, J.M.2
  • 50
    • 77955984817 scopus 로고    scopus 로고
    • Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in northeast China
    • Shen J.P., Zhang L.M., Guo J.F., Ray J.L., He J.Z. Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in northeast China. Applied Soil Ecology 2010, 46:119-124.
    • (2010) Applied Soil Ecology , vol.46 , pp. 119-124
    • Shen, J.P.1    Zhang, L.M.2    Guo, J.F.3    Ray, J.L.4    He, J.Z.5
  • 54
    • 0031737291 scopus 로고    scopus 로고
    • Anatural view of microbial biodiversity within hot spring cyanobacterial mat communities
    • Ward D., Ferris M., Nold S., Bateson M. Anatural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiology and Molecular Biology Reviews 1998, 62:1353-1370.
    • (1998) Microbiology and Molecular Biology Reviews , vol.62 , pp. 1353-1370
    • Ward, D.1    Ferris, M.2    Nold, S.3    Bateson, M.4
  • 56
    • 33846809463 scopus 로고    scopus 로고
    • Spatial variability of nutrient properties in black soil of northeast China
    • Zhang X.Y., Sui Y.Y., Zhang X.D., Meng K., Herbert S.J. Spatial variability of nutrient properties in black soil of northeast China. Pedosphere 2007, 17:19-29.
    • (2007) Pedosphere , vol.17 , pp. 19-29
    • Zhang, X.Y.1    Sui, Y.Y.2    Zhang, X.D.3    Meng, K.4    Herbert, S.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.