메뉴 건너뛰기




Volumn 9, Issue 10, 2015, Pages 2178-2190

Metatranscriptomic census of active protists in soils

Author keywords

[No Author keywords available]

Indexed keywords

AUTOCHTHON; COMMUNITY COMPOSITION; FOREST SOIL; GRASSLAND; MINERAL; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; PROTIST; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SPECIES DIVERSITY; VEGETATION TYPE;

EID: 84942197127     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2015.30     Document Type: Article
Times cited : (218)

References (97)
  • 2
    • 84890259714 scopus 로고    scopus 로고
    • Amplification primers of SSU rDNA for soil protists
    • Adl SM, Habura A, Eglit Y. (2014). Amplification primers of SSU rDNA for soil protists. Soil Biol Biochem 69: 328-342.
    • (2014) Soil Biol Biochem , vol.69 , pp. 328-342
    • Adl, S.M.1    Habura, A.2    Eglit, Y.3
  • 3
    • 0141906788 scopus 로고    scopus 로고
    • Rapid evolutionary dynamics and disease threats to biodiversity
    • Altizer S, Harvell D, Friedle E. (2003). Rapid evolutionary dynamics and disease threats to biodiversity. Trends Ecol Evol 18: 589-596.
    • (2003) Trends Ecol Evol , vol.18 , pp. 589-596
    • Altizer, S.1    Harvell, D.2    Friedle, E.3
  • 4
    • 68149178616 scopus 로고    scopus 로고
    • A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
    • Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM. (2009). A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PloS One 4: e6372.
    • (2009) PloS One , vol.4 , pp. e6372
    • Amaral-Zettler, L.A.1    McCliment, E.A.2    Ducklow, H.W.3    Huse, S.M.4
  • 6
    • 84872936182 scopus 로고    scopus 로고
    • Accuracy of protist diversity assessments: Morphology compared with cloning and direct pyrosequencing of 18 S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
    • Bachy C, Dolan JR, Lopez-Garcia P, Deschamps P, Moreira D. (2013). Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18 S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME J 7: 244-255.
    • (2013) ISME J , vol.7 , pp. 244-255
    • Bachy, C.1    Dolan, J.R.2    Lopez-Garcia, P.3    Deschamps, P.4    Moreira, D.5
  • 7
    • 84875214398 scopus 로고    scopus 로고
    • Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils
    • Baldwin DS, Colloff MJ, Rees GN, Chariton AA, Watson GO, Court LN et al. (2013). Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils. Mol Ecol 22: 1746-1758.
    • (2013) Mol Ecol , vol.22 , pp. 1746-1758
    • Baldwin, D.S.1    Colloff, M.J.2    Rees, G.N.3    Chariton, A.A.4    Watson, G.O.5    Court, L.N.6
  • 8
    • 33845214304 scopus 로고    scopus 로고
    • Protozoa from aboveground and ground soils of a tropical rain forest in Puerto Rico
    • Bamforth SS. (2007). Protozoa from aboveground and ground soils of a tropical rain forest in Puerto Rico. Pedobiologia 50: 515-525.
    • (2007) Pedobiologia , vol.50 , pp. 515-525
    • Bamforth, S.S.1
  • 9
    • 0034939279 scopus 로고    scopus 로고
    • Seasonal variability in abundance and diversity of soil gymnamoebae along a short transect in southeastern USA
    • Bass P, Bischoff PJ. (2001). Seasonal variability in abundance and diversity of soil gymnamoebae along a short transect in southeastern USA. J Eukaryot Microbiol 48: 475-479.
    • (2001) J Eukaryot Microbiol , vol.48 , pp. 475-479
    • Bass, P.1    Bischoff, P.J.2
  • 10
    • 2942711218 scopus 로고    scopus 로고
    • Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa
    • Bass D, Cavalier-Smith T. (2004). Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). Int J Syst Evol Micr 54: 2393-2404.
    • (2004) Int J Syst Evol Micr , vol.54 , pp. 2393-2404
    • Bass, D.1    Cavalier-Smith, T.2
  • 12
    • 0033006859 scopus 로고    scopus 로고
    • Ultrastructural and cytochemical aspects of the interaction between the mycoparasite Pythium oligandrum and soilborne plant pathogens
    • Benhamou N, Rey P, Picard K, Tirilly Y. (1999). Ultrastructural and cytochemical aspects of the interaction between the mycoparasite Pythium oligandrum and soilborne plant pathogens. Phytopathol 89: 506-517.
    • (1999) Phytopathol , vol.89 , pp. 506-517
    • Benhamou, N.1    Rey, P.2    Picard, K.3    Tirilly, Y.4
  • 13
    • 3242711100 scopus 로고    scopus 로고
    • How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys
    • Berney C, Fahrni J, Pawlowski J. (2004). How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys. BMC Biol 2: 13.
    • (2004) BMC Biol , vol.2 , pp. 13
    • Berney, C.1    Fahrni, J.2    Pawlowski, J.3
  • 14
    • 84942208194 scopus 로고    scopus 로고
    • Expansion of the 'Reticulosphere': Diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa)
    • Berney C, Geisen S, Van Wichelen J, Nitsche F, Vanormelingen P, Bonkowski M et al. Expansion of the 'Reticulosphere': diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist.
    • Protist
    • Berney, C.1    Geisen, S.2    Van Wichelen, J.3    Nitsche, F.4    Vanormelingen, P.5    Bonkowski, M.6
  • 15
    • 17844394957 scopus 로고    scopus 로고
    • High diversity of the 'Spumella-like' flagellates: An investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions
    • Boenigk J, Pfandl K, Stadler P, Chatzinotas A. (2005). High diversity of the 'Spumella-like' flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions. Environ Microbiol 7: 685-697.
    • (2005) Environ Microbiol , vol.7 , pp. 685-697
    • Boenigk, J.1    Pfandl, K.2    Stadler, P.3    Chatzinotas, A.4
  • 16
    • 2542548909 scopus 로고    scopus 로고
    • Protozoa and plant growth: Themicrobial loop in soil revisited
    • BonkowskiM. (2004). Protozoa and plant growth: themicrobial loop in soil revisited. New Phytol 162: 617-631.
    • (2004) New Phytol , vol.162 , pp. 617-631
    • Bonkowski, M.1
  • 17
    • 2942725903 scopus 로고    scopus 로고
    • Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium
    • Cavalier-Smith T, Chao EEY, Oates B. (2004). Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium. Eur J Protistol 40: 21-48.
    • (2004) Eur J Protistol , vol.40 , pp. 21-48
    • Cavalier-Smith, T.1    Chao, E.E.Y.2    Oates, B.3
  • 18
    • 84884273701 scopus 로고    scopus 로고
    • Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil
    • Chatzinotas A, Schellenberger S, Glaser K, Kolb S. (2013). Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil. Appl Environ Microbiol 79: 5777-5781.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 5777-5781
    • Chatzinotas, A.1    Schellenberger, S.2    Glaser, K.3    Kolb, S.4
  • 19
    • 51349096469 scopus 로고    scopus 로고
    • Genetic diversity of eukaryotic microorganisms in Lake Taihu, a large shallow subtropical lake in China
    • Chen M, Chen F, Yu Y, Ji J, Kong F. (2008). Genetic diversity of eukaryotic microorganisms in Lake Taihu, a large shallow subtropical lake in China. Microb Ecol 56: 572-583.
    • (2008) Microb Ecol , vol.56 , pp. 572-583
    • Chen, M.1    Chen, F.2    Yu, Y.3    Ji, J.4    Kong, F.5
  • 20
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou H-H, Holmes MH. (2001). DNA sequence quality trimming and vector removal. Bioinformatics 17: 1093-1104.
    • (2001) Bioinformatics , vol.17 , pp. 1093-1104
    • Chou, H.-H.1    Holmes, M.H.2
  • 21
    • 0022181576 scopus 로고
    • Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen
    • Clarholm M. (1985). Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen. Soil Biol Biochem 17: 181-187.
    • (1985) Soil Biol Biochem , vol.17 , pp. 181-187
    • Clarholm, M.1
  • 22
    • 35948932905 scopus 로고    scopus 로고
    • Protozoa and other protista in soil
    • Van Elsas J, Jansson J, Trevors J (eds 2nd ednCRC, Boca Raton London New York CRC Press: Boca Raton, FL, USA
    • Clarholm M, Bonkowski M, Griffiths B. (2007). Protozoa and other protista in soil. In: Van Elsas J, Jansson J, Trevors J (eds), Modern Soil Microbiology2nd ednCRC, Boca Raton London New York. CRC Press: Boca Raton, FL, USA, pp 148-175.
    • (2007) Modern Soil Microbiology , pp. 148-175
    • Clarholm, M.1    Bonkowski, M.2    Griffiths, B.3
  • 23
    • 84876331116 scopus 로고    scopus 로고
    • Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest
    • Coince A, Caël O, Bach C, Lengellé J, Cruaud C, Gavory F et al. (2013). Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest. Fungal Ecol 6: 223-235.
    • (2013) Fungal Ecol , vol.6 , pp. 223-235
    • Coince, A.1    Caël, O.2    Bach, C.3    Lengellé, J.4    Cruaud, C.5    Gavory, F.6
  • 24
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772-772.
    • (2012) Nat Methods , vol.9 , pp. 772-772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 25
    • 84861726111 scopus 로고    scopus 로고
    • Knowledge of morphology is still required when identifying new amoeba isolates by molecular techniques
    • De Jonckheere JF, Gryseels S, Eddyani M. (2012). Knowledge of morphology is still required when identifying new amoeba isolates by molecular techniques. Eur J Protistol 48: 178-184.
    • (2012) Eur J Protistol , vol.48 , pp. 178-184
    • De Jonckheere, J.F.1    Gryseels, S.2    Eddyani, M.3
  • 26
    • 0027388518 scopus 로고
    • Simulation of nitrogen mineralization in the below-ground food webs of two winter wheat fields
    • de Ruiter PC, Moore JC, Zwart KB, Bouwman LA, Hassink J, Bloem J et al. (1993). Simulation of nitrogen mineralization in the below-ground food webs of two winter wheat fields. J Appl Ecol 30: 95-106.
    • (1993) J Appl Ecol , vol.30 , pp. 95-106
    • De Ruiter, P.C.1    Moore, J.C.2    Zwart, K.B.3    Bouwman, L.A.4    Hassink, J.5    Bloem, J.6
  • 27
    • 0028991860 scopus 로고
    • Energetics, patterns of interaction strengths, and stability in real ecosystems
    • de Ruiter PC, Neutel AM, Moore JC. (1995). Energetics, patterns of interaction strengths, and stability in real ecosystems. Science 269: 1257-1260.
    • (1995) Science , vol.269 , pp. 1257-1260
    • De Ruiter, P.C.1    Neutel, A.M.2    Moore, J.C.3
  • 28
    • 0028589021 scopus 로고
    • Notes on protozoa in agricultural soil with emphasis on heterotrophic flagellates and naked amoebae and their ecology
    • Ekelund F, Rønn R. (1994). Notes on protozoa in agricultural soil with emphasis on heterotrophic flagellates and naked amoebae and their ecology. FEMS Microbiol Rev 15: 321-353.
    • (1994) FEMS Microbiol Rev , vol.15 , pp. 321-353
    • Ekelund, F.1    Rønn, R.2
  • 29
    • 0031417615 scopus 로고    scopus 로고
    • Some heterotrophic flagellates from a cultivated garden soil in Australia
    • Ekelund F, Patterson DJ. (1997). Some heterotrophic flagellates from a cultivated garden soil in Australia. Arch Protistenkd 148: 461-478.
    • (1997) Arch Protistenkd , vol.148 , pp. 461-478
    • Ekelund, F.1    Patterson, D.J.2
  • 30
    • 0035544328 scopus 로고    scopus 로고
    • Quantitative estimation of flagellate community structure and diversity in soil samples
    • Ekelund F, Rønn R, Griffiths BS. (2001). Quantitative estimation of flagellate community structure and diversity in soil samples. Protist 152: 301-314.
    • (2001) Protist , vol.152 , pp. 301-314
    • Ekelund, F.1    Rønn, R.2    Griffiths, B.S.3
  • 31
    • 38649124950 scopus 로고    scopus 로고
    • Missing" protists: A molecular prospective
    • Epstein S, López-García P. (2008). "Missing" protists: a molecular prospective. Biodivers Conserv 17: 261-276.
    • (2008) Biodivers Conserv , vol.17 , pp. 261-276
    • Epstein, S.1    López-García, P.2
  • 32
    • 77249141457 scopus 로고    scopus 로고
    • The life history of Flabellula baltica Smirnov (Gymnamoebae, Rhizopoda): Adaptations to a spatially and temporally heterogeneous environment
    • Fenchel T. (2010). The life history of Flabellula baltica Smirnov (Gymnamoebae, Rhizopoda): Adaptations to a spatially and temporally heterogeneous environment. Protist 161: 279-287.
    • (2010) Protist , vol.161 , pp. 279-287
    • Fenchel, T.1
  • 33
    • 17144405280 scopus 로고    scopus 로고
    • Parasitism and growth in the earthworm Lumbricus terrestris: Fitness costs of the gregarine parasite Monocystis sp
    • Field SG, Michiels NK. (2005). Parasitism and growth in the earthworm Lumbricus terrestris: fitness costs of the gregarine parasite Monocystis sp. Parasitology 130: 397-403.
    • (2005) Parasitology , vol.130 , pp. 397-403
    • Field, S.G.1    Michiels, N.K.2
  • 36
    • 0002243891 scopus 로고
    • Soil protozoa: Fundamental problems, ecological significance, adaptations in ciliates and testaceans, bioindicators, and guide to the literature
    • Foissner W. (1987). Soil protozoa: fundamental problems, ecological significance, adaptations in ciliates and testaceans, bioindicators, and guide to the literature. Prog Protistol 2: 69-212.
    • (1987) Prog Protistol , vol.2 , pp. 69-212
    • Foissner, W.1
  • 37
    • 0032840220 scopus 로고    scopus 로고
    • Soil protozoa as bioindicators: Pros and cons, methods, diversity, representative examples
    • Foissner W. (1999). Soil protozoa as bioindicators: pros and cons, methods, diversity, representative examples. Agr Ecosyst Environ 74: 95-112.
    • (1999) Agr Ecosyst Environ , vol.74 , pp. 95-112
    • Foissner, W.1
  • 38
    • 84922274209 scopus 로고    scopus 로고
    • Soil water availability strongly alters the community composition of soil protists
    • Geisen S, Bandow C, Römbke J, Bonkowski M. (2014a). Soil water availability strongly alters the community composition of soil protists. Pedobiologia 57: 205-213.
    • (2014) Pedobiologia , vol.57 , pp. 205-213
    • Geisen, S.1    Bandow, C.2    Römbke, J.3    Bonkowski, M.4
  • 39
    • 84921635875 scopus 로고    scopus 로고
    • Acanthamoeba everywhere: High diversity of Acanthamoeba in soils
    • Geisen S, Fiore-Donno A, Walochnik J, Bonkowski M. (2014b). Acanthamoeba everywhere: high diversity of Acanthamoeba in soils. Parasitol Res 113: 3151-3158.
    • (2014) Parasitol Res , vol.113 , pp. 3151-3158
    • Geisen, S.1    Fiore-Donno, A.2    Walochnik, J.3    Bonkowski, M.4
  • 40
    • 84901005850 scopus 로고    scopus 로고
    • Discrepancy between species borders at morphological and molecular levels in the genus Cochliopodium (Amoebozoa, Himatismenida), with the description of Cochliopodium plurinucleolum n. Sp
    • Geisen S, Kudryavtsev A, Bonkowski M, Smirnov A. (2014c). Discrepancy between species borders at morphological and molecular levels in the genus Cochliopodium (Amoebozoa, Himatismenida), with the description of Cochliopodium plurinucleolum n. sp. Protist 165: 364-383.
    • (2014) Protist , vol.165 , pp. 364-383
    • Geisen, S.1    Kudryavtsev, A.2    Bonkowski, M.3    Smirnov, A.4
  • 41
    • 84896363861 scopus 로고    scopus 로고
    • Two new species of the genus Stenamoeba (Discosea, Longamoebia): Cytoplasmic MTOC is present in one more amoebae lineage
    • Geisen S, Weinert J, Kudryavtsev A, Glotova A, Bonkowski M, Smirnov A. (2014d). Two new species of the genus Stenamoeba (Discosea, Longamoebia): cytoplasmic MTOC is present in one more amoebae lineage. J Eukaryot Microbiol 50: 153-165.
    • (2014) J Eukaryot Microbiol , vol.50 , pp. 153-165
    • Geisen, S.1    Weinert, J.2    Kudryavtsev, A.3    Glotova, A.4    Bonkowski, M.5    Smirnov, A.6
  • 42
    • 84878801441 scopus 로고    scopus 로고
    • Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea
    • Glockling SL, Marshall WL, Gleason FH. (2013). Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea). Fungal Ecol 6: 237-247.
    • (2013) Fungal Ecol , vol.6 , pp. 237-247
    • Glockling, S.L.1    Marshall, W.L.2    Gleason, F.H.3
  • 43
    • 84876417320 scopus 로고    scopus 로고
    • Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates
    • Gong J, Dong J, Liu X, Massana R. (2013). Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates. Protist 164: 369-379.
    • (2013) Protist , vol.164 , pp. 369-379
    • Gong, J.1    Dong, J.2    Liu, X.3    Massana, R.4
  • 44
    • 0008014192 scopus 로고
    • Note on the remarkable retention of vitality by protozoa from old stored soils
    • Goodey T. (1915). Note on the remarkable retention of vitality by protozoa from old stored soils. Ann Appl Biol 1: 395-399.
    • (1915) Ann Appl Biol , vol.1 , pp. 395-399
    • Goodey, T.1
  • 45
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 46
    • 72649084530 scopus 로고    scopus 로고
    • Polymerase chain reaction primers miss half of rRNA microbial diversity
    • Hong S, Bunge J, Leslin C, Jeon S, Epstein SS. (2009). Polymerase chain reaction primers miss half of rRNA microbial diversity. ISME J 3: 1365-1373.
    • (2009) ISME J , vol.3 , pp. 1365-1373
    • Hong, S.1    Bunge, J.2    Leslin, C.3    Jeon, S.4    Epstein, S.S.5
  • 47
    • 64449084792 scopus 로고    scopus 로고
    • Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. Nov., The dominant gliding zooflagellates in soil (Protozoa: Cercozoa
    • Howe AT, Bass D, Vickerman K, Chao EE, Cavalier-Smith T. (2009). Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist 160: 159-189.
    • (2009) Protist , vol.160 , pp. 159-189
    • Howe, A.T.1    Bass, D.2    Vickerman, K.3    Chao, E.E.4    Cavalier-Smith, T.5
  • 48
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A. (1999). CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 49
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. (2001). MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 51
    • 77955145337 scopus 로고    scopus 로고
    • Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil
    • Kaiser C, Koranda M, Kitzler B, Fuchslueger L, Schnecker J, Schweiger P et al. (2010). Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil. New Phytol 187: 843-858.
    • (2010) New Phytol , vol.187 , pp. 843-858
    • Kaiser, C.1    Koranda, M.2    Kitzler, B.3    Fuchslueger, L.4    Schnecker, J.5    Schweiger, P.6
  • 52
    • 84876414131 scopus 로고    scopus 로고
    • Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida
    • Lahr DJG, Grant J, Katz LA. (2013). Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida. Protist 164: 323-339.
    • (2013) Protist , vol.164 , pp. 323-339
    • Lahr, D.J.G.1    Grant, J.2    Katz, L.A.3
  • 53
    • 79961166996 scopus 로고    scopus 로고
    • Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA
    • Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T. (2011). Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-589.
    • (2011) FEMS Microbiol Ecol , vol.77 , pp. 577-589
    • Lanzén, A.1    Jørgensen, S.L.2    Bengtsson, M.M.3    Jonassen, I.4    Øvreås, L.5    Urich, T.6
  • 55
    • 33751176467 scopus 로고    scopus 로고
    • Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site
    • Lara E, Berney C, Ekelund F, Harms H, Chatzinotas A. (2007). Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site. Soil Biol Biochem 39: 139-148.
    • (2007) Soil Biol Biochem , vol.39 , pp. 139-148
    • Lara, E.1    Berney, C.2    Ekelund, F.3    Harms, H.4    Chatzinotas, A.5
  • 56
    • 78650420404 scopus 로고    scopus 로고
    • Highly diverse and seasonally dynamic protist community in a pristine peat bog
    • Lara E, Mitchell EA, Moreira D, López García P. (2011). Highly diverse and seasonally dynamic protist community in a pristine peat bog. Protist 162: 14-32.
    • (2011) Protist , vol.162 , pp. 14-32
    • Lara, E.1    Mitchell, E.A.2    Moreira, D.3    López García, P.4
  • 57
    • 84912092341 scopus 로고    scopus 로고
    • Genetic analysis among environmental strains of Balamuthia mandrillaris recovered from an artificial lagoon and from soil in Sonora, Mexico
    • Lares-Jiménez LF, Booton GC, Lares-Villa F, Velázquez-Contreras CA, Fuerst PA. (2014). Genetic analysis among environmental strains of Balamuthia mandrillaris recovered from an artificial lagoon and from soil in Sonora, Mexico. Exp Parasitol 145 (Supplement): S57-S61.
    • (2014) Exp Parasitol , vol.145 , pp. S57-S61
    • Lares-Jiménez, L.F.1    Booton, G.C.2    Lares-Villa, F.3    Velázquez-Contreras, C.A.4    Fuerst, P.A.5
  • 60
    • 84903287005 scopus 로고    scopus 로고
    • Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: A multiple barcoding approach
    • Lentendu G, Wubet T, Chatzinotas A, Wilhelm C, Buscot F, Schlegel M. (2014). Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach. Mol Ecol 23: 3341-3355.
    • (2014) Mol Ecol , vol.23 , pp. 3341-3355
    • Lentendu, G.1    Wubet, T.2    Chatzinotas, A.3    Wilhelm, C.4    Buscot, F.5    Schlegel, M.6
  • 62
    • 84863959268 scopus 로고    scopus 로고
    • Identification and detection of Phytophthora: Reviewing our progress, identifying our needs
    • Martin FN, Abad ZG, Balci Y, Ivors K. (2012). Identification and detection of Phytophthora: reviewing our progress, identifying our needs. Plant Dis 96: 1080-1103.
    • (2012) Plant Dis , vol.96 , pp. 1080-1103
    • Martin, F.N.1    Abad, Z.G.2    Balci, Y.3    Ivors, K.4
  • 63
    • 77951889917 scopus 로고    scopus 로고
    • Diversity in a hidden world: Potential and limitation of next generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
    • Medinger R, Nolte V, Pandey RV, Jost S, Ottenwälder B, Schlötterer C et al. (2010). Diversity in a hidden world: potential and limitation of next generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol 19: 32-40.
    • (2010) Mol Ecol , vol.19 , pp. 32-40
    • Medinger, R.1    Nolte, V.2    Pandey, R.V.3    Jost, S.4    Ottenwälder, B.5    Schlötterer, C.6
  • 64
    • 0034786157 scopus 로고    scopus 로고
    • Morphological and molecular characterization of a new terrestrial allogromiid species: Edaphoallogromia australica gen. Et Spec. Nov. (Foraminifera fromnorthern Queensland (Australia)
    • Meisterfeld R, Holzmann M, Pawlowski J. (2001). Morphological and molecular characterization of a new terrestrial allogromiid species: Edaphoallogromia australica gen. et spec. nov. (Foraminifera) fromnorthern Queensland (Australia). Protist 152: 185-192.
    • (2001) Protist , vol.152 , pp. 185-192
    • Meisterfeld, R.1    Holzmann, M.2    Pawlowski, J.3
  • 65
    • 79957993439 scopus 로고    scopus 로고
    • Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing
    • Monchy S, Sanciu G, Jobard M, Rasconi S, Gerphagnon M, Chabé M et al. (2011). Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing. Environ Microbiol 13: 1433-1453.
    • (2011) Environ Microbiol , vol.13 , pp. 1433-1453
    • Monchy, S.1    Sanciu, G.2    Jobard, M.3    Rasconi, S.4    Gerphagnon, M.5    Chabé, M.6
  • 67
    • 84938875081 scopus 로고    scopus 로고
    • Soil is the origin for the presence of Naegleria fowleri in the thermal recreational waters
    • Moussa M, Tissot O, Guerlotté J, De Jonckheere J, Talarmin A et al. (2015). Soil is the origin for the presence of Naegleria fowleri in the thermal recreational waters. Parasitol Res 114: 311-315.
    • (2015) Parasitol Res , vol.114 , pp. 311-315
    • Moussa, M.1    Tissot, O.2    Guerlotté, J.3    De Jonckheere, J.4    Talarmin, A.5
  • 68
    • 79951892542 scopus 로고
    • A new key to freshwater and soil gymnamoebae with instructions for culture
    • Page FC. (1988). A new key to freshwater and soil gymnamoebae with instructions for culture. Freshwater Biological Association: Ambleside.
    • (1988) Freshwater Biological Association: Ambleside
    • Page, F.C.1
  • 69
    • 84870260174 scopus 로고    scopus 로고
    • CBOL protist working group: Barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms
    • Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C et al. (2012). CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol 10: e1001419.
    • (2012) PLoS Biol , vol.10 , pp. e1001419
    • Pawlowski, J.1    Audic, S.2    Adl, S.3    Bass, D.4    Belbahri, L.5    Berney, C.6
  • 70
    • 84876335745 scopus 로고    scopus 로고
    • The new micro-kingdoms of eukaryotes
    • Pawlowski J. (2013). The new micro-kingdoms of eukaryotes. BMC Biol 11: 40.
    • (2013) BMC Biol , vol.11 , pp. 40
    • Pawlowski, J.1
  • 72
    • 84859945291 scopus 로고    scopus 로고
    • Metatranscriptomics of the marine sponge Geodia barretti: Tackling phylogeny and function of its microbial community
    • Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T et al. (2012). Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol 14: 1308-1324.
    • (2012) Environ Microbiol , vol.14 , pp. 1308-1324
    • Radax, R.1    Rattei, T.2    Lanzen, A.3    Bayer, C.4    Rapp, H.T.5    Urich, T.6
  • 73
    • 0036865859 scopus 로고    scopus 로고
    • Density and diversity of protozoa in some arid Australian soils
    • Robinson BS, Bamforth SS, Dobson PJ. (2002). Density and diversity of protozoa in some arid Australian soils. J Eukaryot Microbiol 49: 449-453.
    • (2002) J Eukaryot Microbiol , vol.49 , pp. 449-453
    • Robinson, B.S.1    Bamforth, S.S.2    Dobson, P.J.3
  • 74
    • 0015839616 scopus 로고
    • Isolation of Toxoplasma from soil
    • Ruiz A, Frenkel J, Cerdas L. (1973). Isolation of Toxoplasma from soil. J Parasitol 59: 204-206.
    • (1973) J Parasitol , vol.59 , pp. 204-206
    • Ruiz, A.1    Frenkel, J.2    Cerdas, L.3
  • 75
    • 0025643735 scopus 로고
    • The soil fauna of beech forests: Comparison between a mull and a moder soil
    • Schaefer M, Schauermann J. (1990). The soil fauna of beech forests: comparison between a mull and a moder soil. Pedobiologia 34: 299-314.
    • (1990) Pedobiologia , vol.34 , pp. 299-314
    • Schaefer, M.1    Schauermann, J.2
  • 76
    • 19244381026 scopus 로고    scopus 로고
    • C and N mineralisation in the decomposer food webs of a European forest transect
    • Schröter D, Wolters V, de Ruiter PC. (2003). C and N mineralisation in the decomposer food webs of a European forest transect. Oikos 102: 294-308.
    • (2003) Oikos , vol.102 , pp. 294-308
    • Schröter, D.1    Wolters, V.2    De Ruiter, P.C.3
  • 77
    • 4243178226 scopus 로고    scopus 로고
    • Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals
    • Schuster FL, Visvesvara GS. (2004). Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals. Int J Parasitol 34: 1001-1027.
    • (2004) Int J Parasitol , vol.34 , pp. 1001-1027
    • Schuster, F.L.1    Visvesvara, G.S.2
  • 78
    • 84855516276 scopus 로고    scopus 로고
    • Biology and pathogenesis of Acanthamoeba
    • Siddiqui R, Ahmed Khan N. (2012). Biology and pathogenesis of Acanthamoeba. Parasit Vectors 5: 1-13.
    • (2012) Parasit Vectors , vol.5 , pp. 1-13
    • Siddiqui, R.1    Ahmed Khan, N.2
  • 79
    • 9244258872 scopus 로고    scopus 로고
    • Guide to the methods of study and identification of soil gymnamoebae
    • Smirnov AV, Brown S. (2004). Guide to the methods of study and identification of soil gymnamoebae. Protistology 3: 148-190.
    • (2004) Protistology , vol.3 , pp. 148-190
    • Smirnov, A.V.1    Brown, S.2
  • 81
    • 38749085291 scopus 로고    scopus 로고
    • Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; With description of Acramoeba dendroida N. G., N. Sp., Originally misidentified as ' Gephyramoeba sp
    • Smirnov AV, Nassonova ES, Cavalier-Smith T. (2008). Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; with description of Acramoeba dendroida n. g., n. sp., originally misidentified as 'Gephyramoeba sp. Eur J Protistol 44: 35-44.
    • (2008) Eur J Protistol , vol.44 , pp. 35-44
    • Smirnov, A.V.1    Nassonova, E.S.2    Cavalier-Smith, T.3
  • 82
    • 80051579010 scopus 로고    scopus 로고
    • A revised classification of naked lobose amoebae (Amoebozoa: Lobosa
    • Smirnov AV, Chao E, Nassonova ES, Cavalier-Smith T. (2011). A revised classification of naked lobose amoebae (Amoebozoa: Lobosa). Protist 162: 545-570.
    • (2011) Protist , vol.162 , pp. 545-570
    • Smirnov, A.V.1    Chao, E.2    Nassonova, E.S.3    Cavalier-Smith, T.4
  • 83
    • 84963108999 scopus 로고
    • Distance as a measure of taxonomic similarity
    • Sokal RR. (1961). Distance as a measure of taxonomic similarity. Syst Zool 10: 70-79.
    • (1961) Syst Zool , vol.10 , pp. 70-79
    • Sokal, R.R.1
  • 84
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 85
    • 84892972370 scopus 로고    scopus 로고
    • A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
    • Stoeck T, Breiner H-W, Filker S, Ostermaier V, Kammerlander B, Sonntag B. (2014). A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology. Environ Microbiol 16: 430-444.
    • (2014) Environ Microbiol , vol.16 , pp. 430-444
    • Stoeck, T.1    Breiner, H.-W.2    Filker, S.3    Ostermaier, V.4    Kammerlander, B.5    Sonntag, B.6
  • 86
    • 84867103481 scopus 로고    scopus 로고
    • Cryptic diversity within the choanoflagellate morphospecies complex Codosiga botrytis-phylogeny and morphology of ancient and modern isolates
    • Stoupin D, Kiss AK, Arndt H, Shatilovich AV, Gilichinsky DA, Nitsche F. (2012). Cryptic diversity within the choanoflagellate morphospecies complex Codosiga botrytis-phylogeny and morphology of ancient and modern isolates. Eur J Protistol 48: 263-273.
    • (2012) Eur J Protistol , vol.48 , pp. 263-273
    • Stoupin, D.1    Kiss, A.K.2    Arndt, H.3    Shatilovich, A.V.4    Gilichinsky, D.A.5    Nitsche, F.6
  • 87
    • 84863934519 scopus 로고    scopus 로고
    • Heterotrophic flagellates from freshwater and soil habitats in subtropical China (Wuhan Area, Hubei province
    • Tikhonenkov DV, Mylnikov AP, Gong YC, Feng WS, Mazei Y. (2012). Heterotrophic flagellates from freshwater and soil habitats in subtropical China (Wuhan Area, Hubei province). Acta Protozool 51: 65.
    • (2012) Acta Protozool , vol.51 , pp. 65
    • Tikhonenkov, D.V.1    Mylnikov, A.P.2    Gong, Y.C.3    Feng, W.S.4    Mazei, Y.5
  • 88
    • 0030809377 scopus 로고    scopus 로고
    • Heterotrophic flagellates, centrohelid heliozoa and filose amoebae from marine and freshwater sites in the Antarctic
    • Tong S, Vørs N, Patterson D. (1997). Heterotrophic flagellates, centrohelid heliozoa and filose amoebae from marine and freshwater sites in the Antarctic. Polar Biol 18: 91-106.
    • (1997) Polar Biol , vol.18 , pp. 91-106
    • Tong, S.1    Vørs, N.2    Patterson, D.3
  • 89
    • 84888203902 scopus 로고    scopus 로고
    • Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
    • Turner TR, Ramakrishnan K, Walshaw J, Heavens D, Alston M, Swarbreck D et al. (2013). Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants. ISME J 7: 2248-2258.
    • (2013) ISME J , vol.7 , pp. 2248-2258
    • Turner, T.R.1    Ramakrishnan, K.2    Walshaw, J.3    Heavens, D.4    Alston, M.5    Swarbreck, D.6
  • 90
    • 84872920243 scopus 로고    scopus 로고
    • Organic carbon transformations in high-Arctic peat soils: Key functions and microorganisms
    • Tveit A, Schwacke R, Svenning MM, Urich T. (2013). Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
    • (2013) ISME J , vol.7 , pp. 299-311
    • Tveit, A.1    Schwacke, R.2    Svenning, M.M.3    Urich, T.4
  • 91
    • 49649087440 scopus 로고    scopus 로고
    • Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
    • Urich T, Lanzén A, Qi J, Huson DH, Schleper C, Schuster SC. (2008). Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PloS One 3: e2527.
    • (2008) PloS One , vol.3 , pp. e2527
    • Urich, T.1    Lanzén, A.2    Qi, J.3    Huson, D.H.4    Schleper, C.5    Schuster, S.C.6
  • 92
    • 84884975950 scopus 로고    scopus 로고
    • The "double-RNA" approach to simultaneously assess the structure and function of a soil microbial community
    • de Brujin FJ. John Wiley & Sons, Inc.: Hoboken, NJ, USA
    • Urich T, Schleper C (2011) The "Double-RNA" approach to simultaneously assess the structure and function of a soil microbial community.de Brujin FJ. Handbook of Molecular Microbial Ecology I. John Wiley & Sons, Inc.: Hoboken, NJ, USA, pp 587-596.
    • (2011) Handbook of Molecular Microbial Ecology i , pp. 587-596
    • Urich, T.1    Schleper, C.2
  • 93
    • 84906943733 scopus 로고    scopus 로고
    • Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics
    • Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH et al. (2014). Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ Microbiol 16: 2699-2710.
    • (2014) Environ Microbiol , vol.16 , pp. 2699-2710
    • Urich, T.1    Lanzén, A.2    Stokke, R.3    Pedersen, R.B.4    Bayer, C.5    Thorseth, I.H.6
  • 94
    • 0027635829 scopus 로고
    • Balamuthia mandrillaris, N. G., N. Sp., agent of amebic meningoencephalitis in humans and other animals
    • Visvesvara GS, Schuster FL, Martinez AJ. (1993). Balamuthia mandrillaris, N. G., N. Sp., agent of amebic meningoencephalitis in humans and other animals. J Eukaryot Microbiol 40: 504-514.
    • (1993) J Eukaryot Microbiol , vol.40 , pp. 504-514
    • Visvesvara, G.S.1    Schuster, F.L.2    Martinez, A.J.3
  • 95
    • 34248569659 scopus 로고    scopus 로고
    • Pathogenic and opportunistic free living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea
    • Visvesvara GS, Moura H, Schuster FL. (2007). Pathogenic and opportunistic free living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea. FEMS Immunol Med Mic 50: 1-26.
    • (2007) FEMS Immunol Med Mic , vol.50 , pp. 1-26
    • Visvesvara, G.S.1    Moura, H.2    Schuster, F.L.3
  • 96
    • 84874197057 scopus 로고    scopus 로고
    • Can abundance of protists be inferred from sequence data: A case study of Foraminifera
    • Weber AAT, Pawlowski J. (2013). Can abundance of protists be inferred from sequence data: a case study of Foraminifera. PloS one 8: e56739.
    • (2013) PloS One , vol.8 , pp. e56739
    • Weber, A.A.T.1    Pawlowski, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.