-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F., Zardoya R., Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0033794544
-
A molecular reassessment of the leptomyxid amoebae
-
Amaral Zettler L.A., Nerad T.A., O'Kelly C.J., Peglar M.T., Peglar M.T., Gillevet P.M., Silberman J.D., Sogin M.L. A molecular reassessment of the leptomyxid amoebae. Protist 2000, 151:275-282.
-
(2000)
Protist
, vol.151
, pp. 275-282
-
-
Amaral Zettler, L.A.1
Nerad, T.A.2
O'Kelly, C.J.3
Peglar, M.T.4
Peglar, M.T.5
Gillevet, P.M.6
Silberman, J.D.7
Sogin, M.L.8
-
3
-
-
85032069793
-
The effects of silicate depletion and subsequent replenishment on the cytoplasmic fine structure of the silica-secreting testate amoeba Netzelia tuberculata in laboratory culture
-
Anderson O.R. The effects of silicate depletion and subsequent replenishment on the cytoplasmic fine structure of the silica-secreting testate amoeba Netzelia tuberculata in laboratory culture. J Morphol 1992, 211:285-293.
-
(1992)
J Morphol
, vol.211
, pp. 285-293
-
-
Anderson, O.R.1
-
4
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf S.L., Roger A.J., Wenk-Siefert I., Doolittle W.F. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000, 290:972-977.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
5
-
-
0035207791
-
SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited
-
Bolivar I., Fahrni J.F., Smirnov A., Pawlowski J. SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited. Mol Biol Evol 2001, 18:2306-2314.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2306-2314
-
-
Bolivar, I.1
Fahrni, J.F.2
Smirnov, A.3
Pawlowski, J.4
-
6
-
-
79960016307
-
Agglutinated tests in post-Sturtian cap carbonates of Namibia and Mongolia
-
Bosak T., Lahr D.J.G., Pruss S.B., Macdonald F.A., Dalton L., Matys E. Agglutinated tests in post-Sturtian cap carbonates of Namibia and Mongolia. Earth Planet Sci Lett 2011, 308:29-40.
-
(2011)
Earth Planet Sci Lett
, vol.308
, pp. 29-40
-
-
Bosak, T.1
Lahr, D.J.G.2
Pruss, S.B.3
Macdonald, F.A.4
Dalton, L.5
Matys, E.6
-
7
-
-
79952438293
-
Slime molds" among the Tubulinea: Molecular systematics and taxonomy of Copromyxa
-
Brown M.W., Silberman J.D., Spiegel F.W. Slime molds" among the Tubulinea: Molecular systematics and taxonomy of Copromyxa. Protist 2011, 162:277-287.
-
(2011)
Protist
, vol.162
, pp. 277-287
-
-
Brown, M.W.1
Silberman, J.D.2
Spiegel, F.W.3
-
8
-
-
2942725903
-
Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium
-
Cavalier-Smith T., Chao E.E.Y., Oates B. Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium. Eur J Protistol 2004, 40:21-48.
-
(2004)
Eur J Protistol
, vol.40
, pp. 21-48
-
-
Cavalier-Smith, T.1
Chao, E.E.Y.2
Oates, B.3
-
9
-
-
77950628628
-
Saccamoeba lacustris, sp nov (Amoebozoa: Lobosea: Hartmannellidae), a new lobose amoeba, parasitized by the novel chlamydia 'Candidatus Metachlamydia lacustris' (Chlamydiae: Parachlamydiaceae)
-
Corsaro D., Michel R., Walochnik J., Muller K.D., Greub G. Saccamoeba lacustris, sp nov (Amoebozoa: Lobosea: Hartmannellidae), a new lobose amoeba, parasitized by the novel chlamydia 'Candidatus Metachlamydia lacustris' (Chlamydiae: Parachlamydiaceae). Eur J Protistol 2010, 46:86-95.
-
(2010)
Eur J Protistol
, vol.46
, pp. 86-95
-
-
Corsaro, D.1
Michel, R.2
Walochnik, J.3
Muller, K.D.4
Greub, G.5
-
10
-
-
79954529507
-
ProtTest 3: fast selection of best-fit models of protein evolution
-
Darriba D., Taboada G.L., Doallo R., Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011, 27:1164-1165.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
11
-
-
77957233168
-
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
-
Delport W., Poon A.F.Y., Frost S.D.W., Pond S.L.K. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 2010, 26:2455-2457.
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Pond, S.L.K.4
-
12
-
-
67650021807
-
Morphology and SSU rDNA-based phylogeny of a new strain of Saccamoeba sp (Saccamoeba Frenzel, 1892, Amoebozoa)
-
Dykova I., Kostka M., Peckova H. Morphology and SSU rDNA-based phylogeny of a new strain of Saccamoeba sp (Saccamoeba Frenzel, 1892, Amoebozoa). Acta Protozool 2008, 47:397-405.
-
(2008)
Acta Protozool
, vol.47
, pp. 397-405
-
-
Dykova, I.1
Kostka, M.2
Peckova, H.3
-
13
-
-
60749094208
-
Phylogeny of Flabellulidae (Amoebozoa: Leptomyxida) inferred from SSU rDNA sequences of the type strain of Flabellula citata Schaeffer, 1926 and newly isolated strains of marine amoebae
-
Dykova I., Fiala I., Peckova H., Dvorakova H. Phylogeny of Flabellulidae (Amoebozoa: Leptomyxida) inferred from SSU rDNA sequences of the type strain of Flabellula citata Schaeffer, 1926 and newly isolated strains of marine amoebae. Folia Parasitol 2008, 55:256-264.
-
(2008)
Folia Parasitol
, vol.55
, pp. 256-264
-
-
Dykova, I.1
Fiala, I.2
Peckova, H.3
Dvorakova, H.4
-
14
-
-
0242497850
-
Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes
-
Fahrni J.F., Bolivar I., Berney U., Nassonova E., Smirnov A., Pawlowski J. Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Mol Biol Evol 2003, 20:1881-1886.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1881-1886
-
-
Fahrni, J.F.1
Bolivar, I.2
Berney, U.3
Nassonova, E.4
Smirnov, A.5
Pawlowski, J.6
-
15
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N., Gouy M., Gautier C. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 1996, 12:543-548.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
16
-
-
0012388675
-
Rhizopodes nouveaus du psammon littoral de la Mer Noire (Note préliminaire)
-
Golemansky V. Rhizopodes nouveaus du psammon littoral de la Mer Noire (Note préliminaire). Protistologica 1970, 6:365-371.
-
(1970)
Protistologica
, vol.6
, pp. 365-371
-
-
Golemansky, V.1
-
17
-
-
84858705226
-
SSU rDNA phylogeny questions the monophyly of Arcellinida (Amoebozoa) and reveals that Difflugia, the largest Arcellinida genus, is paraphyletic
-
Gomaa F., Todorov M., Heger T.J., Mitchell E.A.D., Lara E. SSU rDNA phylogeny questions the monophyly of Arcellinida (Amoebozoa) and reveals that Difflugia, the largest Arcellinida genus, is paraphyletic. Protist 2012, 163:389-399.
-
(2012)
Protist
, vol.163
, pp. 389-399
-
-
Gomaa, F.1
Todorov, M.2
Heger, T.J.3
Mitchell, E.A.D.4
Lara, E.5
-
18
-
-
74549125386
-
SeaView Version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M., Guindon S., Gascuel O. SeaView Version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010, 27:221-224.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
19
-
-
62649113993
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic " supergroups"
-
Hampl V., Hug L., Leigh J.W., Dacks J.B., Lang B.F., Simpson A.G.B., Roger A.J. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic " supergroups" . Proc Natl Acad Sci USA 2009, 106:3859-3864.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3859-3864
-
-
Hampl, V.1
Hug, L.2
Leigh, J.W.3
Dacks, J.B.4
Lang, B.F.5
Simpson, A.G.B.6
Roger, A.J.7
-
20
-
-
68049142320
-
Multiple alignment of DNA sequences with MAFFT
-
Katoh K., Asimenos G., Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol 2009, 537:39-64.
-
(2009)
Methods Mol Biol
, vol.537
, pp. 39-64
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
21
-
-
84858700238
-
COI barcoding of nebelid testate amoebae (Amoebozoa:Arcellinida): extensive pseudocryptic diversity and redefinition of the Hyalospheniidae Schultze
-
Kosakyan A., Heger T.J., Leander B.S., Todorov M., Mitchell E.A.D., Lara E. COI barcoding of nebelid testate amoebae (Amoebozoa:Arcellinida): extensive pseudocryptic diversity and redefinition of the Hyalospheniidae Schultze. Protist 2012, 163:415-434.
-
(2012)
Protist
, vol.163
, pp. 415-434
-
-
Kosakyan, A.1
Heger, T.J.2
Leander, B.S.3
Todorov, M.4
Mitchell, E.A.D.5
Lara, E.6
-
22
-
-
70350519855
-
Description and phylogenetic relationships of Spumochlamys perforata n. sp and Spumochlamys bryora n. sp (Amoebozoa, Arcellinida)
-
Kudryavtsev A., Pawlowski J., Hausmann K. Description and phylogenetic relationships of Spumochlamys perforata n. sp and Spumochlamys bryora n. sp (Amoebozoa, Arcellinida). J Eukaryot Microbiol 2009, 56:495-503.
-
(2009)
J Eukaryot Microbiol
, vol.56
, pp. 495-503
-
-
Kudryavtsev, A.1
Pawlowski, J.2
Hausmann, K.3
-
23
-
-
75549083380
-
Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase
-
Lahr D.J.G., Katz L.A. Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase. Biotechniques 2009, 47:857-866.
-
(2009)
Biotechniques
, vol.47
, pp. 857-866
-
-
Lahr, D.J.G.1
Katz, L.A.2
-
24
-
-
33644596824
-
Morphology, biometry, ecology and biogeography of five species of Difflugia Leclerc, 1815 (Arcellinida: Difflugiidae), from Tiete River, Brazil
-
Lahr D.J.G., Lopes S.G.B.C. Morphology, biometry, ecology and biogeography of five species of Difflugia Leclerc, 1815 (Arcellinida: Difflugiidae), from Tiete River, Brazil. Acta Protozool 2006, 45:77-90.
-
(2006)
Acta Protozool
, vol.45
, pp. 77-90
-
-
Lahr, D.J.G.1
Lopes, S.G.B.C.2
-
25
-
-
54249092694
-
Ultrastructure and biometry of three lobose testate amoebae of the family Lesquereusiidae (Tubulinea: Arcellinida) based on specimens from Sao Paulo, Brazil
-
Lahr D.J.G., Lopes S.G.B.C. Ultrastructure and biometry of three lobose testate amoebae of the family Lesquereusiidae (Tubulinea: Arcellinida) based on specimens from Sao Paulo, Brazil. Acta Protozool 2007, 46:339-348.
-
(2007)
Acta Protozool
, vol.46
, pp. 339-348
-
-
Lahr, D.J.G.1
Lopes, S.G.B.C.2
-
26
-
-
79958255853
-
Occurrence of the lobose testate amoeba Pseudonebela africana (Amoebozoa, Arcellinida) in the Brazilian " cerrado"
-
Lahr D.J.G., Souza M.B.Ge Occurrence of the lobose testate amoeba Pseudonebela africana (Amoebozoa, Arcellinida) in the Brazilian " cerrado" . Eur J Protistol 2011, 47:231-234.
-
(2011)
Eur J Protistol
, vol.47
, pp. 231-234
-
-
Lahr, D.J.G.1
Souza, M.2
-
27
-
-
78650467109
-
Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by 2 distinct clades of paralogs and recent independent expansions
-
Lahr D.J., Nguyen T.B., Barbero E., Katz L.A. Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by 2 distinct clades of paralogs and recent independent expansions. Mol Biol Evol 2010, 28:223-236.
-
(2010)
Mol Biol Evol
, vol.28
, pp. 223-236
-
-
Lahr, D.J.1
Nguyen, T.B.2
Barbero, E.3
Katz, L.A.4
-
28
-
-
79960855196
-
Comprehensive phylogenetic reconstruction of Amoebozoa based on concatenated analyses of SSU rDNA and actin genes
-
Lahr D.J.G., Grant J., Nguyen T.B., Lin J.H., Katz L.A. Comprehensive phylogenetic reconstruction of Amoebozoa based on concatenated analyses of SSU rDNA and actin genes. PloS ONE 2011, 6(7):e22780.
-
(2011)
PloS ONE
, vol.6
, Issue.7
-
-
Lahr, D.J.G.1
Grant, J.2
Nguyen, T.B.3
Lin, J.H.4
Katz, L.A.5
-
29
-
-
41049112741
-
Ribosomal RNA genes challenge the monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida)
-
Lara E., Heger T.J., Ekelund F., Lamentowicz M., Mitchell E.A.D. Ribosomal RNA genes challenge the monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida). Protist 2008, 159:165-176.
-
(2008)
Protist
, vol.159
, pp. 165-176
-
-
Lara, E.1
Heger, T.J.2
Ekelund, F.3
Lamentowicz, M.4
Mitchell, E.A.D.5
-
30
-
-
0024241467
-
The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
-
Medlin L., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988, 71:491-499.
-
(1988)
Gene
, vol.71
, pp. 491-499
-
-
Medlin, L.1
Elwood, H.J.2
Stickel, S.3
Sogin, M.L.4
-
31
-
-
0012169292
-
Order Arcellinida Kent, 1880
-
Allen Press, Lawrence, Kansas, USA, J.J. Lee, G.F. Leedale, P. Bradbury (Eds.)
-
Meisterfeld R. Order Arcellinida Kent, 1880. The Illustrated Guide to the Protozoa 2002, 827-860. Allen Press, Lawrence, Kansas, USA. 2nd ed. J.J. Lee, G.F. Leedale, P. Bradbury (Eds.).
-
(2002)
The Illustrated Guide to the Protozoa
, pp. 827-860
-
-
Meisterfeld, R.1
-
32
-
-
71849101311
-
-
Retrieved 2009-08-04, 2009, from
-
Miller M, Holder M, Vos R, Midford P, Leiebowitz T, Chan L, Hoover P, Warnow T. (2009). " The CIPRES Portals." . Retrieved 2009-08-04, 2009, from . http://www.phylo.org/sub_sections/portal.
-
(2009)
The CIPRES Portals
-
-
Miller, M.1
Holder, M.2
Vos, R.3
Midford, P.4
Leiebowitz, T.5
Chan, L.6
Hoover, P.7
Warnow, T.8
-
33
-
-
22744451631
-
The testate lobose amoebae (Order Arcellinida Kent, 1880) finally find their home within Amoebozoa
-
Nikolaev SI, D. Mitchell EA, Petrov NB, Berney C, Fahrni J, Pawlowski J. (2005) The testate lobose amoebae (Order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist 156:191-202.
-
(2005)
Protist
, vol.156
, pp. 191-202
-
-
Nikolaev, S.I.D.1
Mitchell, E.A.2
Petrov, N.B.3
Berney, C.4
Fahrni, J.5
Pawlowski, J.6
-
34
-
-
0344372511
-
Siliceous structures secreted by members of the subclass Lobosia (Rhizopodea:Protozoa)
-
Ogden C.G. Siliceous structures secreted by members of the subclass Lobosia (Rhizopodea:Protozoa). Bull Br Mus Nat Hist (Zool) 1979, 36:203-207.
-
(1979)
Bull Br Mus Nat Hist (Zool)
, vol.36
, pp. 203-207
-
-
Ogden, C.G.1
-
35
-
-
0014115498
-
Taxonomic criteria for limax amoebae, with descriptions of 3 new species of Hartmannella and 3 of Vahlkampfia
-
Page F.C. Taxonomic criteria for limax amoebae, with descriptions of 3 new species of Hartmannella and 3 of Vahlkampfia. J Eukaryot Microbiol 1967, 14:499-521.
-
(1967)
J Eukaryot Microbiol
, vol.14
, pp. 499-521
-
-
Page, F.C.1
-
36
-
-
0007711428
-
New family of amebas with fine pseudopodia
-
Page F.C. New family of amebas with fine pseudopodia. Zool J Linn Soc 1975, 56:73-89.
-
(1975)
Zool J Linn Soc
, vol.56
, pp. 73-89
-
-
Page, F.C.1
-
37
-
-
0003123823
-
A light-microscopical and electron-microscopical comparison of limax and flabellate marine amebas belonging to 4 genera
-
Page F.C. A light-microscopical and electron-microscopical comparison of limax and flabellate marine amebas belonging to 4 genera. Protistologica 1980, 16:57-78.
-
(1980)
Protistologica
, vol.16
, pp. 57-78
-
-
Page, F.C.1
-
38
-
-
0003962863
-
-
Institute of Terrestrial Ecology, Cambridge, UK
-
Page F.C. Marine Gymnamoebae 1983, Institute of Terrestrial Ecology, Cambridge, UK.
-
(1983)
Marine Gymnamoebae
-
-
Page, F.C.1
-
39
-
-
0001344330
-
The Classification of Naked Amebas (Phylum-Rhizopoda)
-
Page F.C. The Classification of Naked Amebas (Phylum-Rhizopoda). Arch Protistenkd 1987, 133:199-217.
-
(1987)
Arch Protistenkd
, vol.133
, pp. 199-217
-
-
Page, F.C.1
-
40
-
-
77958043342
-
Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life
-
Parfrey L.W., Grant J., Tekle Y.I., Lasek-Nesselquist E., Morrison H.G., Sogin M.L., Patterson D.J., Katz L.A. Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life. Syst Biol 2010, 59:518-533.
-
(2010)
Syst Biol
, vol.59
, pp. 518-533
-
-
Parfrey, L.W.1
Grant, J.2
Tekle, Y.I.3
Lasek-Nesselquist, E.4
Morrison, H.G.5
Sogin, M.L.6
Patterson, D.J.7
Katz, L.A.8
-
41
-
-
61849133515
-
Untangling the phylogeny of amoeboid protists
-
Pawlowski J., Burki F. Untangling the phylogeny of amoeboid protists. J Eukaryot Microbiol 2009, 56:16-25.
-
(2009)
J Eukaryot Microbiol
, vol.56
, pp. 16-25
-
-
Pawlowski, J.1
Burki, F.2
-
42
-
-
77954270711
-
GUIDANCE: a web server for assessing alignment confidence scores
-
Penn O., Privman E., Ashkenazy H., Landan G., Graur D., Pupko T. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res 2010, 38:W23-W28.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Penn, O.1
Privman, E.2
Ashkenazy, H.3
Landan, G.4
Graur, D.5
Pupko, T.6
-
43
-
-
0242354974
-
Horizontal gene transfer and phylogenetics
-
Philippe H., Douady C.J. Horizontal gene transfer and phylogenetics. Curr Opin Microbiol 2003, 6:498-505.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 498-505
-
-
Philippe, H.1
Douady, C.J.2
-
44
-
-
0033793142
-
Testate amoebae in the Neoproterozoic Era: Evidence from vase-shaped microfossils in the Chuar Group, Grand Canyon
-
Porter S.M., Knoll A.H. Testate amoebae in the Neoproterozoic Era: Evidence from vase-shaped microfossils in the Chuar Group, Grand Canyon. Paleobiology 2000, 26:360-385.
-
(2000)
Paleobiology
, vol.26
, pp. 360-385
-
-
Porter, S.M.1
Knoll, A.H.2
-
45
-
-
0037534127
-
Vase-shaped microfossils from the Neoproterozoic Chuar Group, Grand Canyon: A classification guided by modern testate amoebae
-
Porter S.M., Meisterfeld R., Knoll A.H. Vase-shaped microfossils from the Neoproterozoic Chuar Group, Grand Canyon: A classification guided by modern testate amoebae. J Paleontol 2003, 77:409-429.
-
(2003)
J Paleontol
, vol.77
, pp. 409-429
-
-
Porter, S.M.1
Meisterfeld, R.2
Knoll, A.H.3
-
46
-
-
69449103218
-
Eumycetozoa = Amoebozoa?.: SSUrDNA phylogeny of protosteloid slime molds and its significance for the amoebozoan supergroup
-
Shadwick L.L., Spiegel F.W., Shadwick J.D.L., Brown M.W., Silberman J.D. Eumycetozoa = Amoebozoa?.: SSUrDNA phylogeny of protosteloid slime molds and its significance for the amoebozoan supergroup. PloS ONE 2009, 4(8):e6754.
-
(2009)
PloS ONE
, vol.4
, Issue.8
-
-
Shadwick, L.L.1
Spiegel, F.W.2
Shadwick, J.D.L.3
Brown, M.W.4
Silberman, J.D.5
-
47
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst Biol 2002, 51:492-508.
-
(2002)
Syst Biol
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
48
-
-
21644440363
-
Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling
-
Shimodaira H. Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling. Ann Statist 2004, 32:2616-2641.
-
(2004)
Ann Statist
, vol.32
, pp. 2616-2641
-
-
Shimodaira, H.1
-
49
-
-
0036139287
-
CONSEL: for assessing the confidence of phylogenetic tree selection
-
Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
50
-
-
38749085291
-
Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page, 1987; with description of Acramoeba dendroodea n. g., n. sp., originally misidentified as 'Gephyramoeba sp.'
-
Smirnov A.V., Nassonova E.S., Cavalier-Smith T. Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page, 1987; with description of Acramoeba dendroodea n. g., n. sp., originally misidentified as 'Gephyramoeba sp.'. Eur J Protistol 2008, 44:35-44.
-
(2008)
Eur J Protistol
, vol.44
, pp. 35-44
-
-
Smirnov, A.V.1
Nassonova, E.S.2
Cavalier-Smith, T.3
-
51
-
-
80051579010
-
A revised classification of naked lobose amoebae (Amoebozoa: Lobosa)
-
Smirnov A.V., Chao E., Nassonova E.S., Cavalier-Smith T. A revised classification of naked lobose amoebae (Amoebozoa: Lobosa). Protist 2011, 162:545-570.
-
(2011)
Protist
, vol.162
, pp. 545-570
-
-
Smirnov, A.V.1
Chao, E.2
Nassonova, E.S.3
Cavalier-Smith, T.4
-
52
-
-
70649101310
-
Rhizamoeba neglecta n. sp (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida
-
Smirnov A., Nassonova E., Fahrni J., Pawlowski J. Rhizamoeba neglecta n. sp (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida. Eur J Protistol 2009, 45:251-259.
-
(2009)
Eur J Protistol
, vol.45
, pp. 251-259
-
-
Smirnov, A.1
Nassonova, E.2
Fahrni, J.3
Pawlowski, J.4
-
53
-
-
22744435955
-
Molecular phylogeny and classification of the lobose amoebae
-
Smirnov A., Nassonova E., Berney C., Fahrni J., Bolivar I., Pawlowski J. Molecular phylogeny and classification of the lobose amoebae. Protist 2005, 156:129-142.
-
(2005)
Protist
, vol.156
, pp. 129-142
-
-
Smirnov, A.1
Nassonova, E.2
Berney, C.3
Fahrni, J.4
Bolivar, I.5
Pawlowski, J.6
-
54
-
-
38649083418
-
Diversity and biogeography of testate amoebae
-
Smith H.G., Bobrov A., Lara E. Diversity and biogeography of testate amoebae. Biodivers Conserv 2008, 17:329-343.
-
(2008)
Biodivers Conserv
, vol.17
, pp. 329-343
-
-
Smith, H.G.1
Bobrov, A.2
Lara, E.3
-
55
-
-
0036739159
-
Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci
-
Snoeyenbos-West O.L.O., Salcedo T., McManus G.B., Katz L.A. Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci. Int J Syst Evol Microbiol 2002, 52:1901-1913.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1901-1913
-
-
Snoeyenbos-West, O.L.O.1
Salcedo, T.2
McManus, G.B.3
Katz, L.A.4
-
56
-
-
33750403801
-
RaxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RaxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
57
-
-
50249100595
-
A rapid bootstrap algorithm for the RaxML web servers
-
Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RaxML web servers. Syst Biol 2008, 57:758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
58
-
-
79960854261
-
Placement of diverse amoeboid lineages in the eukaryotic tree of life and the evolution of 'Amoebozoa'
-
Tekle Y.I., Grant J., Katz L.A. Placement of diverse amoeboid lineages in the eukaryotic tree of life and the evolution of 'Amoebozoa'. J Phycol 2007, 43:56.
-
(2007)
J Phycol
, vol.43
, pp. 56
-
-
Tekle, Y.I.1
Grant, J.2
Katz, L.A.3
-
59
-
-
41149122001
-
Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU rDNA
-
Tekle Y.I., Grant J., Anderson O.R., Nerad T.A., Cole J.C., Patterson D.J., Katz L.A. Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU rDNA. Mol Phylogenet Evol 2008, 47:339-352.
-
(2008)
Mol Phylogenet Evol
, vol.47
, pp. 339-352
-
-
Tekle, Y.I.1
Grant, J.2
Anderson, O.R.3
Nerad, T.A.4
Cole, J.C.5
Patterson, D.J.6
Katz, L.A.7
-
60
-
-
84858708562
-
Is Difflugia nebeloides (Amoebozoa: Arcellinida) really a Difflugia? Re-description and new combination
-
Todorov M., Golemansky V., Meisterfeld R. Is Difflugia nebeloides (Amoebozoa: Arcellinida) really a Difflugia? Re-description and new combination. Acta Zool Bulg 2010, 62:13-20.
-
(2010)
Acta Zool Bulg
, vol.62
, pp. 13-20
-
-
Todorov, M.1
Golemansky, V.2
Meisterfeld, R.3
-
61
-
-
39749201627
-
Broadly sampled multigene trees of eukaryotes
-
Yoon H.S., Grant J., Tekle Y., Wu M., Chaon B., Cole J., Logsdon J., Patterson D., Bhattacharya D., Katz L. Broadly sampled multigene trees of eukaryotes. BMC Evol Biol 2008, 8:14.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 14
-
-
Yoon, H.S.1
Grant, J.2
Tekle, Y.3
Wu, M.4
Chaon, B.5
Cole, J.6
Logsdon, J.7
Patterson, D.8
Bhattacharya, D.9
Katz, L.10
|