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Volumn 113, Issue 9, 2014, Pages 3151-3158

Acanthamoeba everywhere: High diversity of Acanthamoeba in soils

Author keywords

Acanthamoeba; Free living amoebae; Molecular ecology; Phylogeny; Protists; Soil microbiology

Indexed keywords

RIBOSOME RNA; RIBOSOME DNA; RNA 18S; SOIL;

EID: 84921635875     PISSN: 09320113     EISSN: 14321955     Source Type: Journal    
DOI: 10.1007/s00436-014-3976-8     Document Type: Article
Times cited : (76)

References (42)
  • 2
    • 84876430890 scopus 로고    scopus 로고
    • Effects of long-term management practices on grassland plant assemblages in Mediterranean cork oak silvo-pastoral systems
    • Bagella S, Salis L, Marrosu GM, Rossetti I, Fanni S, Caria MC, Roggero PP (2013) Effects of long-term management practices on grassland plant assemblages in Mediterranean cork oak silvo-pastoral systems. Plant Ecol 214:621-631
    • (2013) Plant Ecol , vol.214 , pp. 621-631
    • Bagella, S.1    Salis, L.2    Marrosu, G.M.3    Rossetti, I.4    Fanni, S.5    Caria, M.C.6    Roggero, P.P.7
  • 3
    • 84873537375 scopus 로고    scopus 로고
    • Stimulation of plant growth through interactions of bacteria and protozoa: Testing the auxiliary microbial loop hypothesis
    • Bonkowski M, Clarholm M (2012) Stimulation of plant growth through interactions of bacteria and protozoa: testing the auxiliary microbial loop hypothesis. Acta Protozool 51:237-247
    • (2012) Acta Protozool , vol.51 , pp. 237-247
    • Bonkowski, M.1    Clarholm, M.2
  • 4
    • 0036251937 scopus 로고    scopus 로고
    • 18S ribosomal DNA typing and tracking of Acanthamoeba species isolates from corneal scrape specimens, contact lenses, lens cases, and home water supplies of Acanthamoeba keratitis patients in Hong Kong
    • DOI 10.1128/JCM.40.5.1621-1625.2002
    • Booton GC, Kelly DJ, Chu Y-W, Seal DV, Houang E, Lam DSC, Byers TJ, Fuerst PA (2002) 18S ribosomal DNA typing and tracking of Acanthamoeba species isolates from corneal scrape specimens, contact lenses, lens cases, and home water supplies of Acanthamoeba keratitis patients in Hong Kong. J Clin Microbiol 40:1621-1625 (Pubitemid 34493129)
    • (2002) Journal of Clinical Microbiology , vol.40 , Issue.5 , pp. 1621-1625
    • Booton, G.C.1    Kelly, D.J.2    Chu, Y.-W.3    Seal, D.V.4    Houang, E.5    Lam, D.S.C.6    Byers, T.J.7    Fuerst, P.A.8
  • 5
    • 0031663016 scopus 로고    scopus 로고
    • A revised six?Kingdom system of life
    • Cavalier-Smith T (1998) A revised six?kingdom system of life. Biol Rev 73:203-266
    • (1998) Biol Rev , vol.73 , pp. 203-266
    • Cavalier-Smith, T.1
  • 6
    • 0029121044 scopus 로고
    • The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates
    • Cavalier-Smith T, Chao EE (1995) The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates. Proc R Soc Lond B Biol Sci 261:1-6
    • (1995) Proc R Soc Lond B Biol Sci , vol.261 , pp. 1-6
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 7
    • 77953651309 scopus 로고    scopus 로고
    • Phylogenetic evidence for a new genotype of Acanthamoeba (Amoebozoa, Acanthamoebida)
    • Corsaro D, Venditti D (2010) Phylogenetic evidence for a new genotype of Acanthamoeba (Amoebozoa, Acanthamoebida). Parasitol Res 107:233-238
    • (2010) Parasitol Res , vol.107 , pp. 233-238
    • Corsaro, D.1    Venditti, D.2
  • 8
    • 79957804603 scopus 로고    scopus 로고
    • More Acanthamoeba genotypes: Limits to the use rDNA fragments to describe new genotypes
    • Corsaro D, Venditti D (2011) More Acanthamoeba genotypes: limits to the use rDNA fragments to describe new genotypes. Acta Protozool 50:49
    • (2011) Acta Protozool , vol.50 , pp. 49
    • Corsaro, D.1    Venditti, D.2
  • 9
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772
    • (2012) Nat Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 13
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 14
    • 0032702142 scopus 로고    scopus 로고
    • Changes in soil microbial community structure in the presence of microbial-feeding nematodes and protozoa
    • Griffiths BS, Bonkowski M, Dobson G, Caul S (1999) Changes in soil microbial community structure in the presence of microbial-feeding nematodes and protozoa. Pedobiologia 43:297-304 (Pubitemid 29506649)
    • (1999) Pedobiologia , vol.43 , Issue.4 , pp. 297-304
    • Griffiths, B.S.1    Bonkowski, M.2    Dobson, G.3    Caul, S.4
  • 16
    • 84885592522 scopus 로고    scopus 로고
    • Holarctic phylogeography of the testate amoeba Hyalosphenia papilio (Amoebozoa: Arcellinida) reveals extensive genetic diversity explained more by environment than dispersal limitation
    • Heger TJ, Mitchell EAD, Leander BS (2013) Holarctic phylogeography of the testate amoeba Hyalosphenia papilio (Amoebozoa: Arcellinida) reveals extensive genetic diversity explained more by environment than dispersal limitation. Mol Ecol 22:5172-5184
    • (2013) Mol Ecol , vol.22 , pp. 5172-5184
    • Heger, T.J.1    Mitchell, E.A.D.2    Leander, B.S.3
  • 17
    • 0347812892 scopus 로고    scopus 로고
    • Identification of a New Acanthamoeba 18S rRNA Gene Sequence Type, Corresponding to the Species Acanthamoeba jacobsi Sawyer, Nerad and Visvesvara, 1992 (Lobosea: Acanthamoebidae)
    • Hewett MK, Robinson BS, Monis PT, Saint CP (2003) Identification of a new Acanthamoeba 18S rRNA gene sequence type, corresponding to the species Acanthamoeba jacobsi Sawyer, Nerad and Visvesvara, 1992 (Lobosea: Acanthamoebidae). Acta Protozool 42:325-329 (Pubitemid 38033706)
    • (2003) Acta Protozoologica , vol.42 , Issue.4 , pp. 325-329
    • Hewett, M.K.1    Robinson, B.S.2    Monis, P.T.3    Saint, C.P.4
  • 18
    • 0033171423 scopus 로고    scopus 로고
    • Novel bacterial endosymbionts of Acanthamoeba spp. Related to the Paramecium caudatum symbiont Caedibacter caryophilus
    • Horn M, Fritsche TR, Gautom RK, Schleifer K-H, Wagner M (1999) Novel bacterial endosymbionts of Acanthamoeba spp. related to the Paramecium caudatum symbiont Caedibacter caryophilus. Environ Microbiol 1:357-367
    • (1999) Environ Microbiol , vol.1 , pp. 357-367
    • Horn, M.1    Fritsche, T.R.2    Gautom, R.K.3    Schleifer, K.-H.4    Wagner, M.5
  • 19
    • 33746007111 scopus 로고    scopus 로고
    • Grazing of a common species of soil protozoa (Acanthamoeba castellanii) affects rhizosphere bacterial community composition and root architecture of rice (Oryza sativa L.)
    • DOI 10.1016/j.soilbio.2005.11.027, PII S0038071706000320
    • Kreuzer K, Adamczyk J, Iijima M, Wagner M, Scheu S, Bonkowski M (2006) Grazing of a common species of soil protozoa (Acanthamoeba castellanii) affects rhizosphere bacterial community composition and root architecture of rice (Oryza sativa L.). Soil Biol Biochem 38:1665-1672 (Pubitemid 44067115)
    • (2006) Soil Biology and Biochemistry , vol.38 , Issue.7 , pp. 1665-1672
    • Kreuzer, K.1    Adamczyk, J.2    Iijima, M.3    Wagner, M.4    Scheu, S.5    Bonkowski, M.6
  • 21
    • 33751176467 scopus 로고    scopus 로고
    • Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site
    • DOI 10.1016/j.soilbio.2006.06.017, PII S0038071706003130
    • Lara E, Berney C, Ekelund F, Harms H, Chatzinotas A (2007) Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site. Soil Biol Biochem 39:139-148 (Pubitemid 44773768)
    • (2007) Soil Biology and Biochemistry , vol.39 , Issue.1 , pp. 139-148
    • Lara, E.1    Berney, C.2    Ekelund, F.3    Harms, H.4    Chatzinotas, A.5
  • 22
    • 84875378178 scopus 로고    scopus 로고
    • A systematic analysis of Acanthamoeba genotype frequency correlated with source and pathogenicity: T4 is confirmed as a pathogen-rich genotype
    • Maciver SK, Asif M, Simmen MW, Lorenzo-Morales J (2013) A systematic analysis of Acanthamoeba genotype frequency correlated with source and pathogenicity: T4 is confirmed as a pathogen-rich genotype. Eur J Protistol 49:217-221
    • (2013) Eur J Protistol , vol.49 , pp. 217-221
    • Maciver, S.K.1    Asif, M.2    Simmen, M.W.3    Lorenzo-Morales, J.4
  • 23
    • 78650063939 scopus 로고    scopus 로고
    • Identification of a novel T17 genotype of Acanthamoeba from environmental isolates and T10 genotype causing keratitis in Thailand
    • Nuprasert W, Putaporntip C, Pariyakanok L, Jongwutiwes S (2010) Identification of a novel T17 genotype of Acanthamoeba from environmental isolates and T10 genotype causing keratitis in Thailand. J Clin Microbiol 48:4636-4640
    • (2010) J Clin Microbiol , vol.48 , pp. 4636-4640
    • Nuprasert, W.1    Putaporntip, C.2    Pariyakanok, L.3    Jongwutiwes, S.4
  • 26
    • 0033838057 scopus 로고    scopus 로고
    • Introduction to the molecular systematics of Foraminifera
    • Pawlowski J (2000) Introduction to the molecular systematics of Foraminifera. Micropaleontology 46:1-12
    • (2000) Micropaleontology , vol.46 , pp. 1-12
    • Pawlowski, J.1
  • 27
    • 0001671044 scopus 로고
    • Morphologie de la paroi kystique et taxonomie du genre Acanthamoeba (Protozoa, Amoebida)
    • PussardM, Pons R (1977)Morphologie de la paroi kystique et taxonomie du genre Acanthamoeba (Protozoa, Amoebida). Protistologica 13:557-598
    • (1977) Protistologica , vol.13 , pp. 557-598
    • Pussard, M.1    Pons, R.2
  • 28
    • 84887024502 scopus 로고    scopus 로고
    • Characterization of a new pathogenic Acanthamoeba species, A. Byersi n. sp., isolated from a human with fatal amoebic encephalitis
    • Qvarnstrom Y, Nerad TA, Visvesvara GS (2013) Characterization of a new pathogenic Acanthamoeba species, A. byersi n. sp., isolated from a human with fatal amoebic encephalitis. J Eukaryot Microbiol 60:626-633
    • (2013) J Eukaryot Microbiol , vol.60 , pp. 626-633
    • Qvarnstrom, Y.1    Nerad, T.A.2    Visvesvara, G.S.3
  • 29
    • 84887256049 scopus 로고    scopus 로고
    • Genotyping and phylogenetic analysis of Acanthamoeba isolates associated with keratitis
    • Risler A, Coupat-Goutaland B, Pélandakis M (2013) Genotyping and phylogenetic analysis of Acanthamoeba isolates associated with keratitis. Parasitol Res 112:3807-3816
    • (2013) Parasitol Res , vol.112 , pp. 3807-3816
    • Risler, A.1    Coupat-Goutaland, B.2    Pélandakis, M.3
  • 31
    • 17444365840 scopus 로고    scopus 로고
    • Vertical distribution of the free-living amoeba population in soil under desert shrubs in the Negev Desert, Israel
    • DOI 10.1128/AEM.71.4.2053-2060.2005
    • Rodriguez-Zaragoza S, Mayzlish E, Steinberger Y (2005) Vertical distribution of the free-living amoeba population in soil under desert shrubs in the Negev desert, Israel. Appl Environ Microbiol 71:2053-2060 (Pubitemid 40546130)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.4 , pp. 2053-2060
    • Rodriguez-Zaragoza, S.1    Mayzlish, E.2    Steinberger, Y.3
  • 32
    • 0242417580 scopus 로고    scopus 로고
    • Impact of protozoan grazing on bacterial community structure in soil microcosms
    • DOI 10.1128/AEM.68.12.6094-6105.2002
    • Rønn R,McCaig AE, Griffiths BS, Prosser JI (2002) Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl Environ Microbiol 68:6094-6105 (Pubitemid 36342445)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.12 , pp. 6094-6105
    • Ronn, R.1    McCaig, A.E.2    Griffiths, B.S.3    Prosser, J.I.4
  • 33
    • 67549107261 scopus 로고    scopus 로고
    • Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana
    • Rosenberg K, Bertaux J, Krome K, Hartmann A, Scheu S, Bonkowski M (2009) Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana. ISME J 3:675-684
    • (2009) ISME J , vol.3 , pp. 675-684
    • Rosenberg, K.1    Bertaux, J.2    Krome, K.3    Hartmann, A.4    Scheu, S.5    Bonkowski, M.6
  • 35
    • 0002126246 scopus 로고
    • A proposed new family, Acanthamoebidae n. fam. (Order Amoebida), for certain cyst-forming filose amoebae
    • Sawyer TK, Griffin JL (1975) A proposed new family, Acanthamoebidae n. fam. (Order Amoebida), for certain cyst-forming filose amoebae. Trans Am Microsc Soc 94:93-98
    • (1975) Trans Am Microsc Soc , vol.94 , pp. 93-98
    • Sawyer, T.K.1    Griffin, J.L.2
  • 36
    • 0036315180 scopus 로고    scopus 로고
    • Cultivation of pathogenic and opportunistic free-living amebas
    • Schuster FL (2002) Cultivation of pathogenic and opportunistic free-living amebas. Clin Microbiol Rev 15:342-354
    • (2002) Clin Microbiol Rev , vol.15 , pp. 342-354
    • Schuster, F.L.1
  • 37
    • 4243178226 scopus 로고    scopus 로고
    • Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals
    • DOI 10.1016/j.ijpara.2004.06.004, PII S0020751904001365
    • Schuster FL, Visvesvara GS (2004) Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals. Int J Parasitol 34:1001-1027 (Pubitemid 39106843)
    • (2004) International Journal for Parasitology , vol.34 , Issue.9 , pp. 1001-1027
    • Schuster, F.L.1    Visvesvara, G.S.2
  • 38
    • 9244258872 scopus 로고    scopus 로고
    • Guide to the methods of study and identification of soil gymnamoebae
    • Smirnov AV, Brown S (2004) Guide to the methods of study and identification of soil gymnamoebae. Protistology 3:148-190
    • (2004) Protistology , vol.3 , pp. 148-190
    • Smirnov, A.V.1    Brown, S.2
  • 39
    • 80051579010 scopus 로고    scopus 로고
    • A revised classification of naked lobose amoebae (Amoebozoa: Lobosa)
    • Smirnov AV, Chao E, Nassonova ES, Cavalier-Smith T (2011) A revised classification of naked lobose amoebae (Amoebozoa: Lobosa). Protist 162:545-570
    • (2011) Protist , vol.162 , pp. 545-570
    • Smirnov, A.V.1    Chao, E.2    Nassonova, E.S.3    Cavalier-Smith, T.4
  • 41
    • 84881552977 scopus 로고    scopus 로고
    • Pyrosequencing of environmental soil samples reveals biodiversity of the Phytophthora resident community in chestnut forests
    • Vannini A, Bruni N, Tomassini A, Franceschini S, Vettraino AM (2013) Pyrosequencing of environmental soil samples reveals biodiversity of the Phytophthora resident community in chestnut forests. FEMS Microbiol Ecol 85:433-442
    • (2013) FEMS Microbiol Ecol , vol.85 , pp. 433-442
    • Vannini, A.1    Bruni, N.2    Tomassini, A.3    Franceschini, S.4    Vettraino, A.M.5
  • 42
    • 0033770948 scopus 로고    scopus 로고
    • Correlations between morphological, molecular biological, and physiological characteristics in clinical and nonclinical isolates of Acanthamoeba spp
    • Walochnik J, Obwaller A, Aspöck H (2000) Correlations between morphological, molecular biological, and physiological characteristics in clinical and nonclinical isolates of Acanthamoeba spp. Appl Environ Microbiol 66:4408-4413
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4408-4413
    • Walochnik, J.1    Obwaller, A.2    Aspöck, H.3


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