-
2
-
-
84878003103
-
Sorad: A systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome timecourse measurements
-
Aïjö, T. et al. ( 2013) Sorad: A systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome timecourse measurements. Bioinformatics, 29, 1283-1291.
-
(2013)
Bioinformatics
, vol.29
, pp. 1283-1291
-
-
Aïjö, T.1
-
3
-
-
84897858777
-
The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
-
Baldwin-Brown, J. G. et al. (2014) The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms. Mol. Biol. Evol. , 31, 1040-1055.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 1040-1055
-
-
Baldwin-Brown, J.G.1
-
4
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J. E. et al. (2009) Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature, 461, 1243-1247.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
-
5
-
-
52049123852
-
Estimation of 2Nes from temporal allele frequency data
-
Bollback, J. P. et al. (2008) Estimation of 2Nes from temporal allele frequency data. Genetics, 179, 497-502.
-
(2008)
Genetics
, vol.179
, pp. 497-502
-
-
Bollback, J.P.1
-
6
-
-
77957346489
-
Genome-wide analysis of a long-term evolution experiment with Drosophila
-
Burke, M. et al. (2010) Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature, 467, 587-590.
-
(2010)
Nature
, vol.467
, pp. 587-590
-
-
Burke, M.1
-
7
-
-
84867554607
-
What paths do advantageous alleles take during short-term evolutionary change?
-
Burke, M. K. and Long, A. (2012) What paths do advantageous alleles take during short-term evolutionary change? Mol. Ecol. , 21, 4913-416.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 4913-5416
-
-
Burke, M.K.1
Long, A.2
-
8
-
-
80053928843
-
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
-
Cooke, E. J. et al. (2011) Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics, 12, 399.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 399
-
-
Cooke, E.J.1
-
9
-
-
77954656491
-
Drosophila melanogaster recombination rate calculator
-
Fiston-Lavier, A. S. et al. (2010) Drosophila melanogaster recombination rate calculator. Gene, 463, 18-20.
-
(2010)
Gene
, vol.463
, pp. 18-20
-
-
Fiston-Lavier, A.S.1
-
10
-
-
49549105346
-
Gaussian process modelling of latent chemical species: Applications to inferring transcription factor activities
-
Gao, P. et al. (2008) Gaussian process modelling of latent chemical species: Applications to inferring transcription factor activities. Bioinformatics, 24, i70-i75.
-
(2008)
Bioinformatics
, vol.24
, pp. i70-i75
-
-
Gao, P.1
-
11
-
-
84883634438
-
Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters
-
Hensman, J. et al. (2013) Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters. BMC Bioinformatics, 14, 252.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 252
-
-
Hensman, J.1
-
12
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill, W. G. and Robertson, A. (1966) The effect of linkage on limits to artificial selection. Genet. Res. , 8, 269-294.
-
(1966)
Genet. Res.
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
13
-
-
77952328474
-
Model-based method for transcription factor target identification with limited data
-
Honkela, A. et al. (2010) Model-based method for transcription factor target identification with limited data. Proc. Natl Acad. Sci. USA, 107, 7793-7798.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 7793-7798
-
-
Honkela, A.1
-
14
-
-
84858419168
-
Quantifying selection acting on a complex trait using allele frequency time series data
-
Illingworth, C. J. R. et al. (2012) Quantifying selection acting on a complex trait using allele frequency time series data. Mol. Biol. Evol. , 29, 1187-1197.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1187-1197
-
-
Illingworth, C.J.R.1
-
15
-
-
84871303564
-
Evolutionary inference for function-valued traits: Gaussian process regression on phylogenies
-
Jones, N. S. and Moriarty, J. (2013) Evolutionary inference for function-valued traits: Gaussian process regression on phylogenies. J. R. Soc. Interface, 10, 20120616.
-
(2013)
J. R. Soc. Interface
, vol.10
, pp. 20120616
-
-
Jones, N.S.1
Moriarty, J.2
-
16
-
-
79956211692
-
A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression
-
Kalaitzis, A. A. and Lawrence, N. D. (2011) A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression. BMC Bioinformatics, 12, 180.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 180
-
-
Kalaitzis, A.A.1
Lawrence, N.D.2
-
17
-
-
84865866440
-
Experimental evolution
-
Kawecki, T. J. et al. (2012) Experimental evolution. Trends. Ecol. Evol. , 27, 547-560.
-
(2012)
Trends. Ecol. Evol.
, vol.27
, pp. 547-560
-
-
Kawecki, T.J.1
-
18
-
-
65549161909
-
Gaussian process regression bootstrapping: Exploring the effects of uncertainty in time course data
-
Kirk, P. D. W. and Stumpf, M. P. H. (2009) Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data. Bioinformatics, 25, 1300-1306.
-
(2009)
Bioinformatics
, vol.25
, pp. 1300-1306
-
-
Kirk, P.D.W.1
Stumpf, M.P.H.2
-
19
-
-
84893126398
-
A guide for the design of evolve and resequencing studies
-
Kofler, R. and Schlötterer, C. (2014) A guide for the design of evolve and resequencing studies. Mol. Biol. Evol. , 31, 474-483.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 474-483
-
-
Kofler, R.1
Schlötterer, C.2
-
20
-
-
83355175374
-
PoPoolation2: Identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
-
Kofler, R. et al. (2011) PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics, 27, 3435-3436.
-
(2011)
Bioinformatics
, vol.27
, pp. 3435-3436
-
-
Kofler, R.1
-
21
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
Lang, G. I. et al. (2013) Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature, 500, 571-574.
-
(2013)
Nature
, vol.500
, pp. 571-574
-
-
Lang, G.I.1
-
22
-
-
77951941265
-
Estimating replicate time shifts using Gaussian process regression
-
Liu, Q. et al. (2010) Estimating replicate time shifts using Gaussian process regression. Bioinformatics, 26, 770-776.
-
(2010)
Bioinformatics
, vol.26
, pp. 770-776
-
-
Liu, Q.1
-
23
-
-
84856560317
-
Gaussian process modelling for bicoid mRNA regulation in spatio-temporal Bicoid profile
-
Liu, W. and Niranjan, M. (2012) Gaussian process modelling for bicoid mRNA regulation in spatio-temporal Bicoid profile. Bioinformatics, 28, 366-372.
-
(2012)
Bioinformatics
, vol.28
, pp. 366-372
-
-
Liu, W.1
Niranjan, M.2
-
25
-
-
84867574655
-
Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles
-
Orozco-terWengel, P. et al. (2012) Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Mol. Ecol. , 21, 4931-4941.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 4931-4941
-
-
Orozco-terWengel, P.1
-
26
-
-
84875918487
-
Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
-
Palacios, J. A. and Minin, V. N. (2013) Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies. Biometrics, 69, 8-18.
-
(2013)
Biometrics
, vol.69
, pp. 8-18
-
-
Palacios, J.A.1
Minin, V.N.2
-
28
-
-
77950803115
-
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series
-
Stegle, O. et al. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. J. Comput. Biol. , 17, 355-367.
-
(2010)
J. Comput. Biol.
, vol.17
, pp. 355-367
-
-
Stegle, O.1
-
29
-
-
84861535774
-
Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison
-
Titsias, M. K. et al. (2012) Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison. BMC Syst. Biol. , 6, 53.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 53
-
-
Titsias, M.K.1
-
30
-
-
84893147360
-
Massive habitat-specific genomic response in D. Melanogaster populations during experimental evolution in hot and cold environments
-
Tobler, R. et al. (2014) Massive habitat-specific genomic response in D. melanogaster populations during experimental evolution in hot and cold environments. Mol. Biol. Evol. , 31, 364-375.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 364-375
-
-
Tobler, R.1
-
31
-
-
79953735688
-
Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster
-
Turner, T. et al. (2011) Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PLoS Genet. , 7, e1001336.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1001336
-
-
Turner, T.1
-
32
-
-
33750683623
-
Flexible temporal expression profile modelling using the Gaussian process
-
Yuan, M. (2006) Flexible temporal expression profile modelling using the Gaussian process. Comput. Statist. Data Anal. , 51, 1754-1764.
-
(2006)
Comput. Statist. Data Anal.
, vol.51
, pp. 1754-1764
-
-
Yuan, M.1
-
33
-
-
79952291784
-
Experimental selection of hypoxia-tolerant Drosophila melanogaster
-
Zhou, D. et al. (2011) Experimental selection of hypoxia-tolerant Drosophila melanogaster. Proc. Natl Acad. Sci. USA, 7, 2349-2354.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.7
, pp. 2349-2354
-
-
Zhou, D.1
|