Gaussian process modelling of latent chemical species: Applications to inferring transcription factor activities

Bioinformatics

Volumn 24, Issue 16, 2008, Pages

  Gao, Pei ^a   Honkela, Antti ^b   Rattray, Magnus ^a   Lawrence, Neil D ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b AALTO UNIVERSITY   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

LEXA PROTEIN; PROTEIN P53; TRANSCRIPTION FACTOR;

BAYES THEOREM; CONFERENCE PAPER; CONTROLLED STUDY; DROSOPHILA; ESCHERICHIA COLI; GENE ACTIVATION; LINEAR SYSTEM; MATHEMATICAL COMPUTING; MESODERM; NONHUMAN; NONLINEAR SYSTEM; NORMAL DISTRIBUTION; PRIORITY JOURNAL; PROCESS MODEL; PROTEIN PROCESSING; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

EID: 49549105346     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn278     Document Type: Conference Paper

References (17)

1. Alon,U. (2006) An Introduction to Systems Biology: Design Principles of Biological Circuits. Chapman and Hall/CRC, London.
2. Barenco,M. et al. (2006) Genome Biol., 7, R25.
3. Coleman,M.C. and Block,D.E. (2006) Am. Inst. Chem. Eng. J., 52 651-667.
4. Jordan,M.I. et al. (1998) In Michael I. Jordan, (ed.) Learning in Graphical Models, Vol. 89 of Series D: Behavioural and Social Sciences. Kluwer, Dordrecht, The Netherlands, pp. 105-162.
5. Khanin,R. et al. (2006) Proc. Natl Acad. Sci. USA, 103 18592-18596.
6. Lawrence,N.D. et al. (2007) Modelling transcriptional regulation using gaussian processes. In Schölkopf, B. Platt, J.C. and Hofmann,T. (eds). Advances in Neural Information Processing Systems, Vol. 19, MIT Press. Cambridge, MA.
7. Liao,J.C. et al. (2003) Proc. Natl Acad. Sci. USA, 100 15522-15527.
8. Liu,X. et al. (2005) Bioinformatics, 21, 3637-3644.
9. Mendes,P. and Kell,D. (1998) Bioinformatics, 14, 869-883.
10. Nachman,I. et al. (2004) Bioinformatics, 20 (Suppl. 1), 248-256.
11. Rasmussen,C.E and Williams,C.K.I. (2006) Gaussian Processes for Machine Learning, MIT Press, Cambridge, MA.
12. Rogers,S. et al. (2006) In Probabilistic Modeling and Machine Learning in Structural and Systems Biology, June 17, 18, 2006 Tuusula, Finland.
13. Sandmann,T. et al. (2006) Dev. Cell, 10, 797-807.
14. Sanguinetti,G. et al. (2006a) Bioinformatics, 22, 2275-2281.
15. Sanguinetti,G. et al. (2006b) Bioinformatics, 22, 1753-1759.
16. Tomancak,P. et al. (2002) Genome Biol., 3, RESEARCH0088.
17. Vyshemirsky,V. and Girolami,M. (2008) Bioinformatics, 24, 833-839.