-
1
-
-
70049091620
-
Tractable nonparametric Bayesian inference in Poisson processes with Gaussian process intensities
-
Montreal, Canada.
-
Adams, R., Murray, I., and MacKay, D. (2009). Tractable nonparametric Bayesian inference in Poisson processes with Gaussian process intensities. In Proceedings of the 26th International Conference on Machine Learning, 9-16. Montreal, Canada.
-
(2009)
Proceedings of the 26th International Conference on Machine Learning
, pp. 9-16
-
-
Adams, R.1
Murray, I.2
MacKay, D.3
-
2
-
-
0003572485
-
-
2nd edition. New York, NY: Springer-Verlag.
-
Andersen, P. K., Borgan, O., Gill, R. D., and Keiding, N. (1995). Statistical Models Based on Counting Processes, 2nd edition. New York, NY: Springer-Verlag.
-
(1995)
Statistical Models Based on Counting Processes
-
-
Andersen, P.K.1
Borgan, O.2
Gill, R.D.3
Keiding, N.4
-
3
-
-
0031526640
-
An algorithm for nonparametric Bayesian estimation of a Poisson intensity
-
Arjas, E. and Heikkinen, J. (1997). An algorithm for nonparametric Bayesian estimation of a Poisson intensity. Computational Statistics 12, 385-402.
-
(1997)
Computational Statistics
, vol.12
, pp. 385-402
-
-
Arjas, E.1
Heikkinen, J.2
-
4
-
-
77952309592
-
Epidemic dynamics revealed in dengue evolution
-
Bennett, S., Drummond, A., Kapan, D., Suchard, M., Muñoz-Jordán, J., Pybus, O., Holmes, E., and Gubler, D. (2010). Epidemic dynamics revealed in dengue evolution. Molecular Biology and Evolution 27, 811-818.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 811-818
-
-
Bennett, S.1
Drummond, A.2
Kapan, D.3
Suchard, M.4
Muñoz-Jordán, J.5
Pybus, O.6
Holmes, E.7
Gubler, D.8
-
5
-
-
84984287983
-
Analyzing point processes subjected to random deletions
-
Brillinger, D. R. (1979). Analyzing point processes subjected to random deletions. Canadian Journal of Statistics 7, 21-27.
-
(1979)
Canadian Journal of Statistics
, vol.7
, pp. 21-27
-
-
Brillinger, D.R.1
-
6
-
-
77950437916
-
Ancient DNA analyses exclude humans as the driving force behind late Pleistocene usk ox (Ovibos moschatus) population dynamics
-
Campos, P. F., Willerslev, E., Sher, A., Orlando, L., Axelsson, E., Tikhonov, A., Aaris Sørensen, K., Greenwood, A. D., Ralf-Dietrich, K., Kosintsev, P., Krakhmalnaya, T., Kuznetsova, T., Lemey, P., MacPhee, R., Norris, C. A., Shepherd, K., and Suchard, M. A. (2010). Ancient DNA analyses exclude humans as the driving force behind late Pleistocene usk ox (Ovibos moschatus) population dynamics. Proceedings of the National Academy of Sciences 107, 5675-5680.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, pp. 5675-5680
-
-
Campos, P.F.1
Willerslev, E.2
Sher, A.3
Orlando, L.4
Axelsson, E.5
Tikhonov, A.6
Aaris Sørensen, K.7
Greenwood, A.D.8
Ralf-Dietrich, K.9
Kosintsev, P.10
Krakhmalnaya, T.11
Kuznetsova, T.12
Lemey, P.13
MacPhee, R.14
Norris, C.A.15
Shepherd, K.16
Suchard, M.A.17
-
9
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond, A. J., Nicholls, G. K., Rodrigo, A. G., and Solomon, W. (2002). Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161, 1307-1320.
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
10
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond, A. J., Rambaut, A., Shapiro, B., and Pybus, O. G. (2005). Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution 22, 1185-1192.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
11
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond, A. J., Suchard, M. A., Xie, D., and Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969-1973.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
12
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
0002667169
-
Coalescent approaches to HIV population genetics
-
K. A. Crandall (ed), Balimore, MD: Johns Hopkins University Press.
-
Felsenstein, J. and Rodrigo, A. G. (1999). Coalescent approaches to HIV population genetics. In The Evolution of HIV, K. A. Crandall (ed), 233-272. Balimore, MD: Johns Hopkins University Press.
-
(1999)
The Evolution of HIV
, pp. 233-272
-
-
Felsenstein, J.1
Rodrigo, A.G.2
-
17
-
-
5044229945
-
-
1st edition. New York, NY: Oxford University Press.
-
Hein, J., Schierup, M. H., and Wiuf, C. (2005). Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory, 1st edition. New York, NY: Oxford University Press.
-
(2005)
Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory
-
-
Hein, J.1
Schierup, M.H.2
Wiuf, C.3
-
18
-
-
60549111699
-
Bayesian inference of population size history from multiple loci
-
Heled, J. and Drummond, A. (2008). Bayesian inference of population size history from multiple loci. BMC Evolutionary Biology 8, 1-289.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 1-289
-
-
Heled, J.1
Drummond, A.2
-
19
-
-
85153162477
-
-
Influenza Genome Sequencing Project (). Available at:.aspx, acessed April, 2011.
-
Influenza Genome Sequencing Project (2011). Available at: http://www.niaid.nih.gov/labsandresources/resources/dmid/gsc/influenza/Pages/default.aspx, acessed April, 2011.
-
(2011)
-
-
-
21
-
-
34250186433
-
Bayesian mixture modeling for spatial Poisson process intensities, with applications to extreme value analysis
-
Kottas, A. and Sansó, B. (2007). Bayesian mixture modeling for spatial Poisson process intensities, with applications to extreme value analysis. Journal of Statistical Planning and Inference 137, 3151-3163.
-
(2007)
Journal of Statistical Planning and Inference
, vol.137
, pp. 3151-3163
-
-
Kottas, A.1
Sansó, B.2
-
22
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner, M. K., Yamato, J., and Felsenstein, J. (1998). Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149, 429-434.
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
23
-
-
0018519083
-
Simulation of nonhomogeneous Poisson processes by thinning
-
Lewis, P. and Shedler, G. (1979). Simulation of nonhomogeneous Poisson processes by thinning. Naval Research Logistics Quarterly 26, 403-413.
-
(1979)
Naval Research Logistics Quarterly
, vol.26
, pp. 403-413
-
-
Lewis, P.1
Shedler, G.2
-
25
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin, V. N., Bloomquist, E. W., and Suchard, M. A. (2008). Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution 25, 1459-1471.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
26
-
-
0040843527
-
Log Gaussian Cox processes
-
Møller, J., Syversveen, A. R., and Waagepetersen, R. P. (1998). Log Gaussian Cox processes. Scandinavian Journal of Statistics 25, 451-482.
-
(1998)
Scandinavian Journal of Statistics
, vol.25
, pp. 451-482
-
-
Møller, J.1
Syversveen, A.R.2
Waagepetersen, R.P.3
-
27
-
-
84862298375
-
Elliptical slice sampling
-
Volume 6 of JMLR: W&CP, Sardinia, Italy: Chia Laguna Resort.
-
Murray, I., Adams, R. P., and MacKay, D. J. (2010). Elliptical slice sampling. In Proceedings of the 13th International Conference on Artificial Intelligence and Statistics, Volume 6 of JMLR: W&CP 6, 541-548. Sardinia, Italy: Chia Laguna Resort.
-
(2010)
Proceedings of the 13th International Conference on Artificial Intelligence and Statistics
, vol.6
, pp. 541-548
-
-
Murray, I.1
Adams, R.P.2
MacKay, D.J.3
-
28
-
-
34547983340
-
MCMC for doubly-intractable distributions
-
Arlington, VA: AUAI Press.
-
Murray, I., Ghahramani, Z., and MacKay, D. (2006). MCMC for doubly-intractable distributions. In Proceedings of the 22nd Annual Conference on Uncertainty in Artificial Intelligence, 359-366. Arlington, VA: AUAI Press.
-
(2006)
Proceedings of the 22nd Annual Conference on Uncertainty in Artificial Intelligence
, pp. 359-366
-
-
Murray, I.1
Ghahramani, Z.2
MacKay, D.3
-
29
-
-
0019396823
-
On Lewis' Simulation Method for Point Processes
-
Ogata, Y. (1981). On Lewis' Simulation Method for Point Processes. IEEE Transactions on Information Theory 27, 23-31.
-
(1981)
IEEE Transactions on Information Theory
, vol.27
, pp. 23-31
-
-
Ogata, Y.1
-
30
-
-
14344259235
-
Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo
-
Opgen-Rhein, R., Fahrmeir, L., and Strimmer, K. (2005). Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo. BMC Evolutionary Biology 5, 1-6.
-
(2005)
BMC Evolutionary Biology
, vol.5
, pp. 1-6
-
-
Opgen-Rhein, R.1
Fahrmeir, L.2
Strimmer, K.3
-
31
-
-
84966209651
-
Integrability of expected increments of point processes and a related random change of scale
-
Papangelou, F. (1972). Integrability of expected increments of point processes and a related random change of scale. Transactions of the American Mathematical Society 165, 483-506.
-
(1972)
Transactions of the American Mathematical Society
, vol.165
, pp. 483-506
-
-
Papangelou, F.1
-
32
-
-
0037358963
-
The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: A Bayesian coalescent approach
-
Pybus, O. G., Drummond, A. J., Nakano, T., Robertson, B. H., and Rambaut, A. (2003). The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: A Bayesian coalescent approach. Molecular Biology and Evolution 20, 381-387.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 381-387
-
-
Pybus, O.G.1
Drummond, A.J.2
Nakano, T.3
Robertson, B.H.4
Rambaut, A.5
-
33
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
Rambaut, A., Pybus, O. G., Nelson, M. I., Viboud, C., Taubenberger, J. K., and Holmes, E. C. (2008). The genomic and epidemiological dynamics of human influenza A virus. Nature 453, 615-619.
-
(2008)
Nature
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
Pybus, O.G.2
Nelson, M.I.3
Viboud, C.4
Taubenberger, J.K.5
Holmes, E.C.6
-
35
-
-
0033831605
-
Genetic epidemiology of hepatitis C virus throughout Egypt
-
Ray, S. C., Arthur, R. R., Carella, A., Bukh, J., and Thomas, D. L. (2000). Genetic epidemiology of hepatitis C virus throughout Egypt. The Journal of Infectious Diseases 182, 698-707.
-
(2000)
The Journal of Infectious Diseases
, vol.182
, pp. 698-707
-
-
Ray, S.C.1
Arthur, R.R.2
Carella, A.3
Bukh, J.4
Thomas, D.L.5
-
36
-
-
0036245438
-
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
-
Rosenberg, N. A. and Nordborg, M. (2002). Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews Genetics 3, 380-390.
-
(2002)
Nature Reviews Genetics
, vol.3
, pp. 380-390
-
-
Rosenberg, N.A.1
Nordborg, M.2
-
38
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
Slatkin, M. and Hudson, R. R. (1991). Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129, 555-562.
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
39
-
-
0035211479
-
Exploring the demographic history of DNA sequences using the generalized skyline plot
-
Strimmer, K. and Pybus, O. G. (2001). Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution 18, 2298-2305.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 2298-2305
-
-
Strimmer, K.1
Pybus, O.G.2
-
40
-
-
27144461017
-
Part I: Ancestral inference in population genetics
-
of Lecture Notes in Mathematics, J. Picard (ed), New York, NY: Springer Verlag.
-
Tavaré, S. (2004). Part I: Ancestral inference in population genetics. In Lectures on Probability Theory and Statistics, volume 1837 of Lecture Notes in Mathematics, J. Picard (ed), 1-188. New York, NY: Springer Verlag.
-
(2004)
Lectures on Probability Theory and Statistics
, vol.1837
, pp. 1-188
-
-
Tavaré, S.1
-
41
-
-
84862602372
-
Semiparametric latent factor models
-
R. Cowell and Z. Ghahramani (eds), volume, Barbados: AISTATS.
-
Teh, Y. W., Seeger, M., and Jordan, M. I. (2005). Semiparametric latent factor models. In Proceedings of the International Workshop on Artificial Intelligence and Statistics, R. Cowell and Z. Ghahramani (eds), volume 10, 333-340. Barbados: AISTATS.
-
(2005)
Proceedings of the International Workshop on Artificial Intelligence and Statistics
, vol.10
, pp. 333-340
-
-
Teh, Y.W.1
Seeger, M.2
Jordan, M.I.3
-
42
-
-
61549091172
-
Extensions of the coalescent effective population size
-
Wakeley, J. and Sargsyan, O. (2009). Extensions of the coalescent effective population size. Genetics 181, 341-345.
-
(2009)
Genetics
, vol.181
, pp. 341-345
-
-
Wakeley, J.1
Sargsyan, O.2
|