-
1
-
-
84857751694
-
Viroids: Self-replicating, mobile, and fast-evolving noncoding regulatory RNAs
-
Ding B (2010) Viroids: Self-replicating, mobile, and fast-evolving noncoding regulatory RNAs. Wiley Interdiscip Rev RNA 1: 362-375.
-
(2010)
Wiley Interdiscip Rev RNA
, vol.1
, pp. 362-375
-
-
Ding, B.1
-
2
-
-
2142816580
-
Discovering viroids - A personal perspective
-
Diener TO (2003) Discovering viroids - a personal perspective. Nat Rev Microbiol 1: 75-80.
-
(2003)
Nat Rev Microbiol
, vol.1
, pp. 75-80
-
-
Diener, T.O.1
-
3
-
-
24944468730
-
Viroids and viroid-host interactions
-
DOI 10.1146/annurev.phyto.43.040204.140243
-
Flores R, Hernandez C, Martinez de Alba AE, Daros JA, Di Serio F (2005) Viroids and viroid-host interactions. Annu Rev Phytopathol 43: 117-139. (Pubitemid 41318867)
-
(2005)
Annual Review of Phytopathology
, vol.43
, pp. 117-139
-
-
Flores, R.1
Hernandez, C.2
Martinez, D.A.A.E.3
Daros, J.-A.4
Di Serio, F.5
-
4
-
-
0030011110
-
Compilation and analysis of viroid and viroid-like RNA sequences
-
DOI 10.1093/nar/24.10.1793
-
Bussiere F, Lafontaine D, Perreault JP (1996) Compilation and analysis of viroid and viroid-like RNA sequences. Nucleic Acids Res 24: 1793-1798. (Pubitemid 26156060)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.10
, pp. 1793-1798
-
-
Bussiere, F.1
Lafontaine, D.2
Perreault, J.-P.3
-
5
-
-
0019729258
-
Chrysantemum stunt viroid: Primary sequence and secondary structure
-
Haseloff J, Symons RH (1981) Chrysanthemum stunt viroid: Primary sequence and secondary structure. Nucleic Acids Res 9: 2741-2752. (Pubitemid 11058654)
-
(1981)
Nucleic Acids Research
, vol.9
, Issue.12
, pp. 2741-2752
-
-
Haseloff, J.1
Symons, R.H.2
-
6
-
-
0019922899
-
Viroid RNAs of cadang-cadang disease of coconuts
-
DOI 10.1038/299316a0
-
Haseloff J, Mohamed NA, Symons RH (1982) Viroid RNAs of cadang-cadang disease of coconuts. Nature 299: 316-321. (Pubitemid 12012857)
-
(1982)
Nature
, vol.299
, Issue.5881
, pp. 316-321
-
-
Haseloff, J.1
Mohamed, N.A.2
Symons, R.H.3
-
7
-
-
0023651226
-
Nucleotide sequence and secondary structure of apple scar skin viroid
-
Hashimoto J, Koganezawa H (1987) Nucleotide sequence and secondary structure of apple scar skin viroid. Nucleic Acids Res 15: 7045-7052.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 7045-7052
-
-
Hashimoto, J.1
Koganezawa, H.2
-
8
-
-
0026758087
-
Pear blister canker viroid is a member of the apple scar skin subgroup (apscaviroids) and also has sequence homology with viroids from other subgroups
-
Hernandez C, Elena SF, Moya A, Flores R (1992) Pear blister canker viroid is a member of the apple scar skin subgroup (apscaviroids) and also has sequence homology with viroids from other subgroups. J Gen Virol 73 (Pt 10): 2503-2507.
-
(1992)
J Gen Virol
, vol.73
, Issue.PART 10
, pp. 2503-2507
-
-
Hernandez, C.1
Elena, S.F.2
Moya, A.3
Flores, R.4
-
9
-
-
0035001595
-
Characterization of a new citrus viroid species tentatively termed Citrus viroid OS
-
DOI 10.1007/s007050170129
-
Ito T, Ieki H, Ozaki K, Ito T (2001) Characterization of a new citrus viroid species tentatively termed citrus viroid OS. Arch Virol 146: 975-982. (Pubitemid 32477409)
-
(2001)
Archives of Virology
, vol.146
, Issue.5
, pp. 975-982
-
-
Ito, T.1
Ieki, H.2
Ozaki, K.3
Ito, T.4
-
10
-
-
0020842176
-
Structural similarities between viroids and transposable genetic elements
-
Kiefer MC, Owens RA, Diener TO (1983) Structural similarities between viroids and transposable genetic elements. Proc Natl Acad Sci U S A 80: 6234-6238.
-
(1983)
Proc Natl Acad Sci U S A
, vol.80
, pp. 6234-6238
-
-
Kiefer, M.C.1
Owens, R.A.2
Diener, T.O.3
-
11
-
-
0032696915
-
Tomato chlorotic dwarf viroid: An evolutionary link in the origin of pospiviroids
-
Singh RP, Nie X, Singh M (1999) Tomato chlorotic dwarf viroid: An evolutionary link in the origin of pospiviroids. J Gen Virol 80 (Pt 11): 2823-2828. (Pubitemid 29504653)
-
(1999)
Journal of General Virology
, vol.80
, Issue.11
, pp. 2823-2828
-
-
Singh, R.P.1
Nie, X.2
Singh, M.3
-
12
-
-
0025294472
-
Primary and secondary structure of a new viroid 'species' (CbVd 1) present in the Coleus blumei cultivar 'Bienvenue'
-
Spieker RL, Haas B, Charng YC, Freimuller K, Sanger HL (1990) Primary and secondary structure of a new viroid 'species' (CbVd 1) present in the coleus blumei cultivar 'bienvenue'. Nucleic Acids Res 18: 3998. (Pubitemid 20222949)
-
(1990)
Nucleic Acids Research
, vol.18
, Issue.13
, pp. 3998
-
-
Spieker, R.L.1
Haas, B.2
Charng, Y.-C.3
Freimuller, K.4
Sanger, H.L.5
-
13
-
-
0029828666
-
In vitro-generated 'inverse' chimeric coleus blumei viroids evolve in vivo into infectious RNA replicons
-
Spieker RL (1996) In vitro-generated 'inverse' chimeric coleus blumei viroids evolve in vivo into infectious RNA replicons. J Gen Virol 77 (Pt 11): 2839-2846.
-
(1996)
J Gen Virol
, vol.77
, Issue.PART 11
, pp. 2839-2846
-
-
Spieker, R.L.1
-
14
-
-
80955177570
-
Molecular characterization of potato spindle tuber viroid in dahlia
-
Tsushima T, Murakami S, Ito H, He Y, Charith Raj A, et al. (2011) Molecular characterization of potato spindle tuber viroid in dahlia. Journal of General Plant Pathology 77: 253-256.
-
(2011)
Journal of General Plant Pathology
, vol.77
, pp. 253-256
-
-
Tsushima, T.1
Murakami, S.2
Ito, H.3
He, Y.4
Charith Raj, A.5
-
15
-
-
8744242004
-
Natural infections of tomato by citrus exocortis viroid, columnea latent viroid, potato spindle tuber viroid and tomato chlorotic dwarf viroid
-
Verhoeven Jtj, Jansen CCC, Willemen TM, Kox LFF, Owens RA, et al. (2004) Natural infections of tomato by citrus exocortis viroid, columnea latent viroid, potato spindle tuber viroid and tomato chlorotic dwarf viroid. Eur J Plant Pathol 110: 823-831.
-
(2004)
Eur J Plant Pathol
, vol.110
, pp. 823-831
-
-
Verhoeven, J.T.J.1
Jansen, C.C.C.2
Willemen, T.M.3
Kox, L.F.F.4
Owens, R.A.5
-
16
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
-
DOI 10.1021/ja043822v
-
Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127: 4223-4231. (Pubitemid 40463047)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.12
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
17
-
-
77949447172
-
RNAstructure: Software for RNA secondary structure prediction and analysis
-
2105-11-129
-
Reuter JS, Mathews DH (2010) RNAstructure: Software for RNA secondary structure prediction and analysis. BMC Bioinformatics 11: 129-2105-11-129.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 129
-
-
Reuter, J.S.1
Mathews, D.H.2
-
18
-
-
84875865461
-
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
-
Hajdin CE, Bellaousov S, Huggins W, Leonard CW, Mathews DH, et al. (2013) Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots. Proc Natl Acad Sci U S A 110: 5498-5503.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 5498-5503
-
-
Hajdin, C.E.1
Bellaousov, S.2
Huggins, W.3
Leonard, C.W.4
Mathews, D.H.5
-
19
-
-
84871434763
-
Principles for understanding the accuracy of SHAPE-directed RNA structure modeling
-
Leonard CW, Hajdin CE, Karabiber F, Mathews DH, Favorov OV, et al. (2013) Principles for understanding the accuracy of SHAPE-directed RNA structure modeling. Biochemistry 52: 588-595.
-
(2013)
Biochemistry
, vol.52
, pp. 588-595
-
-
Leonard, C.W.1
Hajdin, C.E.2
Karabiber, F.3
Mathews, D.H.4
Favorov, O.V.5
-
20
-
-
79960439622
-
Mapping studies of the peach latent mosaic viroid reveal novel structural features
-
Dube A, Bolduc F, Bisaillon M, Perreault JP (2011) Mapping studies of the peach latent mosaic viroid reveal novel structural features. Mol Plant Pathol 12: 688-701.
-
(2011)
Mol Plant Pathol
, vol.12
, pp. 688-701
-
-
Dube, A.1
Bolduc, F.2
Bisaillon, M.3
Perreault, J.P.4
-
21
-
-
0242674276
-
Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure
-
DOI 10.1128/JVI.74.6.2647-2654.2000
-
Bussiere F, Ouellet J, Cote F, Levesque D, Perreault JP (2000) Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure. J Virol 74: 2647-2654. (Pubitemid 30117574)
-
(2000)
Journal of Virology
, vol.74
, Issue.6
, pp. 2647-2654
-
-
Bussiere, F.1
Ouellet, J.2
Cote, F.3
Levesque, D.4
Perreault, J.P.5
-
22
-
-
52949152433
-
ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
-
Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC (2008) ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14: 1979-1990.
-
(2008)
RNA
, vol.14
, pp. 1979-1990
-
-
Vasa, S.M.1
Guex, N.2
Wilkinson, K.A.3
Weeks, K.M.4
Giddings, M.C.5
-
24
-
-
84864377848
-
The use of a combination of computer-assisted structure prediction and SHAPE probing to elucidate the secondary structures of five viroids
-
Xu W, Bolduc F, Hong N, Perreault JP (2012) The use of a combination of computer-assisted structure prediction and SHAPE probing to elucidate the secondary structures of five viroids. Mol Plant Pathol 13: 666-676.
-
(2012)
Mol Plant Pathol
, vol.13
, pp. 666-676
-
-
Xu, W.1
Bolduc, F.2
Hong, N.3
Perreault, J.P.4
-
25
-
-
0030580111
-
Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch
-
DOI 10.1006/jmbi.1996.0543
-
Gast FU, Kempe D, Spieker RL, Sanger HL (1996) Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch. J Mol Biol 262: 652-670. (Pubitemid 26343513)
-
(1996)
Journal of Molecular Biology
, vol.262
, Issue.5
, pp. 652-670
-
-
Gast, F.-U.1
Kempe, D.2
Spieker, R.L.3
Sanger, H.L.4
-
26
-
-
57149086080
-
Time-resolved RNA SHAPE chemistry
-
Mortimer SA, Weeks KM (2008) Time-resolved RNA SHAPE chemistry. J Am Chem Soc 130: 16178-16180.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16178-16180
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
27
-
-
84871411741
-
QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
-
Karabiber F, McGinnis JL, Favorov OV, Weeks KM (2013) QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis. RNA 19: 63-73.
-
(2013)
RNA
, vol.19
, pp. 63-73
-
-
Karabiber, F.1
McGinnis, J.L.2
Favorov, O.V.3
Weeks, K.M.4
-
29
-
-
0006923612
-
Coconut cadang-cadang disease and its viroid agent
-
Hanold D, Randles J (1991) Coconut cadang-cadang disease and its viroid agent. Plant Dis 75: 330-335.
-
(1991)
Plant Dis
, vol.75
, pp. 330-335
-
-
Hanold, D.1
Randles, J.2
-
30
-
-
0023957153
-
Coconut tinangaja viroid: Sequence homology with coconut cadang-cadang viroid and other potato spindle tuber viroid related RNAs
-
Keese P, Osorio-Keese ME, Symons RH (1988) Coconut tinangaja viroid: Sequence homology with coconut cadang-cadang viroid and other potato spindle tuber viroid related RNAs. Virology 162: 508-510.
-
(1988)
Virology
, vol.162
, pp. 508-510
-
-
Keese, P.1
Osorio-Keese, M.E.2
Symons, R.H.3
-
31
-
-
0032820174
-
Biological properties of apple scar skin viroid: Isolates, host range, different sensitivity of apple cultivars, elimination, and natural transmission
-
Desvignes J, Grasseau N, Boye R, Cornaggia D, Aparicio F, et al. (1999) Biological properties of apple scar skin viroid: Isolates, host range, different sensitivity of apple cultivars, elimination, and natural transmission. Plant Dis 83: 768-772.
-
(1999)
Plant Dis
, vol.83
, pp. 768-772
-
-
Desvignes, J.1
Grasseau, N.2
Boye, R.3
Cornaggia, D.4
Aparicio, F.5
-
32
-
-
84892984707
-
Infectious cDNA clones of four viroids in coleus blumei and molecular characterization of their progeny
-
Jiang D, Gao R, Qin L, Wu Z, Xie L, et al. (2014) Infectious cDNA clones of four viroids in coleus blumei and molecular characterization of their progeny. Virus Res 180: 97-101.
-
(2014)
Virus Res
, vol.180
, pp. 97-101
-
-
Jiang, D.1
Gao, R.2
Qin, L.3
Wu, Z.4
Xie, L.5
-
33
-
-
60449096939
-
Identification and characterization of a new coleviroid (CbVd-5)
-
Hou WY, Sano T, Li F, Wu ZJ, Li L, et al. (2009) Identification and characterization of a new coleviroid (CbVd-5). Arch Virol 154: 315-320.
-
(2009)
Arch Virol
, vol.154
, pp. 315-320
-
-
Hou, W.Y.1
Sano, T.2
Li, F.3
Wu, Z.J.4
Li, L.5
-
34
-
-
67349175607
-
Coleus blumei viroid 6: A new tentative member of the genus coleviroid derived from natural genome shuffling
-
Hou WY, Li SF, Wu ZJ, Jiang DM, Sano T (2009) Coleus blumei viroid 6: A new tentative member of the genus coleviroid derived from natural genome shuffling. Arch Virol 154: 993-997.
-
(2009)
Arch Virol
, vol.154
, pp. 993-997
-
-
Hou, W.Y.1
Li, S.F.2
Wu, Z.J.3
Jiang, D.M.4
Sano, T.5
-
35
-
-
79955784691
-
Sap-direct RT-PCR for the rapid detection of coleus blumei viroids of the genus coleviroid from natural host plants
-
Jiang D, Wu Z, Xie L, Sano T, Li S (2011) Sap-direct RT-PCR for the rapid detection of coleus blumei viroids of the genus coleviroid from natural host plants. J Virol Methods 174: 123-127.
-
(2011)
J Virol Methods
, vol.174
, pp. 123-127
-
-
Jiang, D.1
Wu, Z.2
Xie, L.3
Sano, T.4
Li, S.5
-
36
-
-
0024828178
-
Nucleotide sequence and proposed secondary structure of Columnea latent viroid: A natural mosaic of viroid sequences
-
Hammond R, Smith DR, Diener TO (1989) Nucleotide sequence and proposed secondary structure of columnea latent viroid: A natural mosaic of viroid sequences. Nucleic Acids Res 17: 10083-10094. (Pubitemid 20010802)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.23
, pp. 10083-10094
-
-
Hammond, R.1
Smith, D.R.2
Diener, T.O.3
|