-
1
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
Barciszewski,J. and Clark,B.F.C. (eds), NATO ASI Series, Kluwer Academic Publishers
-
Zuker,M., Mathews,D.H. and Turner,D.H. (1999). Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. Barciszewski,J. and Clark,B.F.C. (eds), In RNA Biochemistry and Biotechnology, NATO ASI Series, Kluwer Academic Publishers.
-
(1999)
RNA Biochemistry and Biotechnology
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
-
2
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker,I.L., Fontana,W., Stadler,P.F., Bonhoeffer,S., Tacker,M. and Schuster,P. (1994) Fast folding and comparison of RNA secondary structures. Monatshefte f. Chemie, 125, 167-188.
-
(1994)
Monatshefte F. Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, S.4
Tacker, M.5
Schuster, P.6
-
3
-
-
12944293179
-
In vitro cloning of complex mixtures of DNA on microbeads: Physical separation of deferentially expressed cDNAs
-
Brenner,S., Williams R.S., Vermaas,E.H., Storck,T., Moon,K., McCollum,C., Mao,J-I., Luo,S., Kirchner,J.J., Eletr,S. et al. (2000) In vitro cloning of complex mixtures of DNA on microbeads: physical separation of deferentially expressed cDNAs. Proc. Natl Acad Sci. USA, 97, 1665-1670.
-
(2000)
Proc. Natl Acad Sci. USA
, vol.97
, pp. 1665-1670
-
-
Brenner, S.1
Williams, R.S.2
Vermaas, E.H.3
Storck, T.4
Moon, K.5
McCollum, C.6
Mao, J.-I.7
Luo, S.8
Kirchner, J.J.9
Eletr, S.10
-
4
-
-
0029804246
-
Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy
-
Shoemaker,D.D., Lashkari,D.A., Morris,O., Mittman,M. and Davis,R.W. (1996) Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genet., 16, 450-456.
-
(1996)
Nature Genet.
, vol.16
, pp. 450-456
-
-
Shoemaker, D.D.1
Lashkari, D.A.2
Morris, O.3
Mittman, M.4
Davis, R.W.5
-
5
-
-
0037134023
-
Solution of a 20-variable 3-SAT problem on a DNA computer
-
Braich,R.S., Chelyapov,N., Johnson,C., Rothemund,P.W.K. and Adleman,L. (2002) Solution of a 20-variable 3-SAT problem on a DNA computer. Science, 296, 499-502.
-
(2002)
Science
, vol.296
, pp. 499-502
-
-
Braich, R.S.1
Chelyapov, N.2
Johnson, C.3
Rothemund, P.W.K.4
Adleman, L.5
-
6
-
-
0029100233
-
Predicting thermodynamic properties of RNA
-
Serra,M.J., Turner,D.H. and Freier,S.M. (1995) Predicting thermodynamic properties of RNA. Methods Enzymol., 259, 243-261.
-
(1995)
Methods Enzymol.
, vol.259
, pp. 243-261
-
-
Serra, M.J.1
Turner, D.H.2
Freier, S.M.3
-
7
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia,J.,Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
8
-
-
0033524952
-
A dynamic programming algorithm for RNA structure prediction including pseudoknots
-
Rivas,E. and Eddy,S.R. (1999) A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol., 285, 2053-2068.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2053-2068
-
-
Rivas, E.1
Eddy, S.R.2
-
9
-
-
0029061125
-
The computer simulation of RNA folding pathways using a genetic algorithm
-
Gultyaev,A.P., van Batenburg,F.H.D. and Pleij,C.W.A. (1995) The computer simulation of RNA folding pathways using a genetic algorithm. J. Mol. Biol., 250, 37-51.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 37-51
-
-
Gultyaev, A.P.1
van Batenburg, F.H.D.2
Pleij, C.W.A.3
-
10
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
Rupert,P.B. and Ferré-D'Amaré,A.R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature, 410, 780-786.
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferré-D'Amaré, A.R.2
-
11
-
-
0032729689
-
Predicting oligonucleotide affinity to nucleic acid targets
-
Mathews,D.H., Burkard,M.E., Freier,S.M., Wyatt,J.R. and Turner,D.H. (1999) Predicting oligonucleotide affinity to nucleic acid targets. RNA, 5, 1458-1469.
-
(1999)
RNA
, vol.5
, pp. 1458-1469
-
-
Mathews, D.H.1
Burkard, M.E.2
Freier, S.M.3
Wyatt, J.R.4
Turner, D.H.5
-
12
-
-
0035190608
-
Selection of optimal DNA oligos for gene expression arrays
-
Li,F. and Stormo,G.D. (2001) Selection of optimal DNA oligos for gene expression arrays. Bioinformatics, 17, 1067-1076.
-
(2001)
Bioinformatics
, vol.17
, pp. 1067-1076
-
-
Li, F.1
Stormo, G.D.2
-
13
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker,M. and Stiegler,P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
14
-
-
0036376063
-
Designing RNA structures: Natural and artificial selection
-
ACM Press, New York
-
Cohen,B. and Skiena,S. (2002) Designing RNA structures: natural and artificial selection. Proc. Sixth Annual Int. Conf. Comp. Biol., ACM Press, New York, pp. 109-116.
-
(2002)
Proc. Sixth Annual Int. Conf. Comp. Biol.
, pp. 109-116
-
-
Cohen, B.1
Skiena, S.2
-
15
-
-
35248820719
-
Algorithms for testing that sets of DNA words concatenate without secondary structure
-
Springer-Verlag, 2568
-
Andronescu,M., Dees,D., Slaybaugh,L., Zhao,Y., Cohen,B., Condon,A. and Skiena,S. (2003) Algorithms for testing that sets of DNA words concatenate without secondary structure. Proc. Eighth International Workshop on DNA Based Computers. Lecture Notes in Computer Science, Springer-Verlag, 2568, 182-195.
-
(2003)
Proc. Eighth International Workshop on DNA Based Computers. Lecture Notes in Computer Science
, pp. 182-195
-
-
Andronescu, M.1
Dees, D.2
Slaybaugh, L.3
Zhao, Y.4
Cohen, B.5
Condon, A.6
Skiena, S.7
-
16
-
-
0034652140
-
Molecular computation: RNA solutions to chess problems
-
Faulhammer,D., Cukras,A.R., Lipton,R.J. and Landweber,L.F. (2000) Molecular computation: RNA solutions to chess problems. Proc. Natl Acad. Sci. USA, 97, 1385-1389.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 1385-1389
-
-
Faulhammer, D.1
Cukras, A.R.2
Lipton, R.J.3
Landweber, L.F.4
|