메뉴 건너뛰기




Volumn 60, Issue 15, 2015, Pages 1332-1347

A detailed procedure for CRISPR/Cas9-mediated gene editing in Arabidopsis thaliana

Author keywords

Arabidopsis thaliana; CRISPR Cas9; Genome engineering; Targeted gene editing

Indexed keywords


EID: 84941112266     PISSN: 20959273     EISSN: 20959281     Source Type: Journal    
DOI: 10.1007/s11434-015-0848-2     Document Type: Article
Times cited : (36)

References (53)
  • 1
    • 55549138062 scopus 로고    scopus 로고
    • Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases
    • Redondo P, Prieto J, Munoz IG et al (2008) Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases. Nature 456:107–111
    • (2008) Nature , vol.456 , pp. 107-111
    • Redondo, P.1    Prieto, J.2    Munoz, I.G.3
  • 2
    • 13844319542 scopus 로고    scopus 로고
    • Targeted mutagenesis using zinc-finger nucleases in Arabidopsis
    • Lloyd A (2005) Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proc Natl Acad Sci USA 102:2232–2237
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2232-2237
    • Lloyd, A.1
  • 3
    • 33644693285 scopus 로고    scopus 로고
    • High-frequency homologous recombination in plants mediated by zinc-finger nucleases
    • Wright DA, Townsend JA, Winfrey RJ Jr et al (2005) High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J 44:693–705
    • (2005) Plant J , vol.44 , pp. 693-705
    • Wright, D.A.1    Townsend, J.A.2    Winfrey, R.J.3
  • 4
    • 66249147273 scopus 로고    scopus 로고
    • Precise genome modification in the crop species Zea mays using zinc-finger nucleases
    • Shukla VK, Doyon Y, Miller JC et al (2009) Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature 459:437–441
    • (2009) Nature , vol.459 , pp. 437-441
    • Shukla, V.K.1    Doyon, Y.2    Miller, J.C.3
  • 5
    • 79953783824 scopus 로고    scopus 로고
    • Targeted mutagenesis in Arabidopsis using zinc-finger nucleases
    • Zhang F, Voytas DF (2010) Targeted mutagenesis in Arabidopsis using zinc-finger nucleases. Methods Mol Biol 701:167–177
    • (2010) Methods Mol Biol , vol.701 , pp. 167-177
    • Zhang, F.1    Voytas, D.F.2
  • 6
    • 34447319080 scopus 로고    scopus 로고
    • An improved zinc-finger nuclease architecture for highly specific genome editing
    • Miller JC, Holmes MC, Wang J et al (2007) An improved zinc-finger nuclease architecture for highly specific genome editing. Nat Biotechnol 25:778–785
    • (2007) Nat Biotechnol , vol.25 , pp. 778-785
    • Miller, J.C.1    Holmes, M.C.2    Wang, J.3
  • 7
    • 79551685675 scopus 로고    scopus 로고
    • A TALE nuclease architecture for efficient genome editing
    • Miller JC, Tan S, Qiao G et al (2010) A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 29:143–148
    • (2010) Nat Biotechnol , vol.29 , pp. 143-148
    • Miller, J.C.1    Tan, S.2    Qiao, G.3
  • 8
    • 80053343092 scopus 로고    scopus 로고
    • TAL effectors: customizable proteins for DNA targeting
    • Bogdanove AJ, Voytas DF (2011) TAL effectors: customizable proteins for DNA targeting. Science 333:1843–1846
    • (2011) Science , vol.333 , pp. 1843-1846
    • Bogdanove, A.J.1    Voytas, D.F.2
  • 9
    • 79952302385 scopus 로고    scopus 로고
    • De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks
    • Mahfouz MM, Li L, Shamimuzzaman M et al (2011) De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proc Natl Acad Sci USA 108:2623–2628
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 2623-2628
    • Mahfouz, M.M.1    Li, L.2    Shamimuzzaman, M.3
  • 10
    • 84860736700 scopus 로고    scopus 로고
    • High-efficiency TALEN-based gene editing produces disease-resistant rice
    • Li T, Liu B, Spalding MH et al (2012) High-efficiency TALEN-based gene editing produces disease-resistant rice. Nat Biotechnol 30:390–392
    • (2012) Nat Biotechnol , vol.30 , pp. 390-392
    • Li, T.1    Liu, B.2    Spalding, M.H.3
  • 11
    • 84885780340 scopus 로고    scopus 로고
    • Targeted mutagenesis of Arabidopsis thaliana using engineered TAL effector nucleases
    • Christian M, Qi Y, Zhang Y et al (2013) Targeted mutagenesis of Arabidopsis thaliana using engineered TAL effector nucleases. G3 (Bethesda) 3:1697–1705
    • (2013) G3 (Bethesda) , vol.3 , pp. 1697-1705
    • Christian, M.1    Qi, Y.2    Zhang, Y.3
  • 12
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I et al (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337:816–821
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3
  • 13
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong L, Ran FA, Cox D et al (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339:819–823
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3
  • 14
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali P, Yang L, Esvelt KM et al (2013) RNA-guided human genome engineering via Cas9. Science 339:823–826
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3
  • 15
    • 33749037701 scopus 로고    scopus 로고
    • Mechanism of homologous recombination: mediators and helicases take on regulatory functions
    • Sung P, Klein H (2006) Mechanism of homologous recombination: mediators and helicases take on regulatory functions. Nat Rev Mol Cell Biol 7:739–750
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 739-750
    • Sung, P.1    Klein, H.2
  • 16
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber MR (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79:181–211
    • (2010) Annu Rev Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 17
    • 80755187806 scopus 로고    scopus 로고
    • Double-strand break end resection and repair pathway choice
    • Symington LS, Gautier J (2011) Double-strand break end resection and repair pathway choice. Annu Rev Genet 45:247–271
    • (2011) Annu Rev Genet , vol.45 , pp. 247-271
    • Symington, L.S.1    Gautier, J.2
  • 18
    • 78149261827 scopus 로고    scopus 로고
    • The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
    • Garneau JE, Dupuis ME, Villion M et al (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468:67–71
    • (2010) Nature , vol.468 , pp. 67-71
    • Garneau, J.E.1    Dupuis, M.E.2    Villion, M.3
  • 19
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ (2010) Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463:568–571
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 20
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing. The new frontier of genome engineering with CRISPR-Cas9
    • Doudna JA, Charpentier E (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 346:1258096
    • (2014) Science , vol.346 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2
  • 21
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu PD, Lander ES, Zhang F (2014) Development and applications of CRISPR-Cas9 for genome engineering. Cell 157:1262–1278
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 22
    • 84885181396 scopus 로고    scopus 로고
    • Efficient genome editing in plants using a CRISPR/Cas system
    • Feng Z, Zhang B, Ding W et al (2013) Efficient genome editing in plants using a CRISPR/Cas system. Cell Res 23:1229–1232
    • (2013) Cell Res , vol.23 , pp. 1229-1232
    • Feng, Z.1    Zhang, B.2    Ding, W.3
  • 23
    • 84886926151 scopus 로고    scopus 로고
    • Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice
    • Jiang W, Zhou H, Bi H et al (2013) Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Nucleic Acids Res 41:e188
    • (2013) Nucleic Acids Res , vol.41 , pp. e188
    • Jiang, W.1    Zhou, H.2    Bi, H.3
  • 24
    • 84883785822 scopus 로고    scopus 로고
    • Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
    • Li JF, Norville JE, Aach J et al (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol 31:688–691
    • (2013) Nat Biotechnol , vol.31 , pp. 688-691
    • Li, J.F.1    Norville, J.E.2    Aach, J.3
  • 25
    • 84891932593 scopus 로고    scopus 로고
    • Application of the CRISPR-Cas system for efficient genome engineering in plants
    • Mao Y, Zhang H, Xu N et al (2013) Application of the CRISPR-Cas system for efficient genome engineering in plants. Mol Plant 6:2008–2011
    • (2013) Mol Plant , vol.6 , pp. 2008-2011
    • Mao, Y.1    Zhang, H.2    Xu, N.3
  • 26
    • 84885180177 scopus 로고    scopus 로고
    • Targeted mutagenesis in rice using CRISPR-Cas system
    • Miao J, Guo D, Zhang J et al (2013) Targeted mutagenesis in rice using CRISPR-Cas system. Cell Res 23:1233–1236
    • (2013) Cell Res , vol.23 , pp. 1233-1236
    • Miao, J.1    Guo, D.2    Zhang, J.3
  • 27
    • 84883828590 scopus 로고    scopus 로고
    • Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
    • Nekrasov V, Staskawicz B, Weigel D et al (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol 31:691–693
    • (2013) Nat Biotechnol , vol.31 , pp. 691-693
    • Nekrasov, V.1    Staskawicz, B.2    Weigel, D.3
  • 28
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Shan Q, Wang Y, Li J et al (2013) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotechnol 31:686–688
    • (2013) Nat Biotechnol , vol.31 , pp. 686-688
    • Shan, Q.1    Wang, Y.2    Li, J.3
  • 29
    • 84890831873 scopus 로고    scopus 로고
    • RNA-guided genome editing for target gene mutations in wheat
    • Upadhyay SK, Kumar J, Alok A et al (2013) RNA-guided genome editing for target gene mutations in wheat. G3 (Bethesda) 3:2233–2238
    • (2013) G3 (Bethesda) , vol.3 , pp. 2233-2238
    • Upadhyay, S.K.1    Kumar, J.2    Alok, A.3
  • 30
    • 84884962826 scopus 로고    scopus 로고
    • RNA-guided genome editing in plants using a CRISPR-Cas system
    • Xie K, Yang Y (2013) RNA-guided genome editing in plants using a CRISPR-Cas system. Mol Plant 6:1975–1983
    • (2013) Mol Plant , vol.6 , pp. 1975-1983
    • Xie, K.1    Yang, Y.2
  • 31
    • 84908584019 scopus 로고    scopus 로고
    • Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated system
    • Brooks C, Nekrasov V, Lippman ZB et al (2014) Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated system. Plant Physiol 166:1292–1297
    • (2014) Plant Physiol , vol.166 , pp. 1292-1297
    • Brooks, C.1    Nekrasov, V.2    Lippman, Z.B.3
  • 32
    • 84904068340 scopus 로고    scopus 로고
    • Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
    • Fauser F, Schiml S, Puchta H (2014) Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J 79:348–359
    • (2014) Plant J , vol.79 , pp. 348-359
    • Fauser, F.1    Schiml, S.2    Puchta, H.3
  • 33
    • 84899556051 scopus 로고    scopus 로고
    • Targeted genome editing of sweet orange using Cas9/sgRNA
    • Jia H, Wang N (2014) Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One 9:e93806
    • (2014) PLoS One , vol.9 , pp. e93806
    • Jia, H.1    Wang, N.2
  • 34
    • 84964313841 scopus 로고    scopus 로고
    • A CRISPR/Cas9 toolkit for multiplex genome editing in plants
    • Xing HL, Dong L, Wang ZP et al (2014) A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol 14:327
    • (2014) BMC Plant Biol , vol.14 , pp. 327
    • Xing, H.L.1    Dong, L.2    Wang, Z.P.3
  • 35
    • 84904639258 scopus 로고    scopus 로고
    • The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation
    • Zhang H, Zhang J, Wei P et al (2014) The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnol J 12:797–807
    • (2014) Plant Biotechnol J , vol.12 , pp. 797-807
    • Zhang, H.1    Zhang, J.2    Wei, P.3
  • 36
    • 84896924524 scopus 로고    scopus 로고
    • Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis
    • Feng Z, Mao Y, Xu N et al (2014) Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc Natl Acad Sci USA 111:4632–4637
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 4632-4637
    • Feng, Z.1    Mao, Y.2    Xu, N.3
  • 37
    • 84934438984 scopus 로고    scopus 로고
    • CRISPR primer designer: design primers for knockout and chromosome imaging CRISPR-Cas system
    • Yan M, Zhou SR, Xue HW (2014) CRISPR primer designer: design primers for knockout and chromosome imaging CRISPR-Cas system. J Integr Plant Biol. doi:10.1111/jipb.12295
    • (2014) J Integr Plant Biol
    • Yan, M.1    Zhou, S.R.2    Xue, H.W.3
  • 38
    • 57749116848 scopus 로고    scopus 로고
    • Transformation of Agrobacterium using the freeze-thaw method
    • Weigel D, Glazebrook J (2006) Transformation of Agrobacterium using the freeze-thaw method. CSH Protoc. doi:10.1101/pdb.prot4666
    • (2006) CSH Protoc
    • Weigel, D.1    Glazebrook, J.2
  • 39
    • 67049139523 scopus 로고    scopus 로고
    • In planta transformation of Arabidopsis
    • Weigel D, Glazebrook J (2006) In planta transformation of Arabidopsis. CSH Protoc. doi:10.1101/pdb.prot4668
    • (2006) CSH Protoc
    • Weigel, D.1    Glazebrook, J.2
  • 40
    • 73449139768 scopus 로고    scopus 로고
    • Tape-Arabidopsis Sandwich: a simpler Arabidopsis protoplast isolation method
    • Wu FH, Shen SC, Lee LY et al (2009) Tape-Arabidopsis Sandwich: a simpler Arabidopsis protoplast isolation method. Plant Methods 5:16
    • (2009) Plant Methods , vol.5 , pp. 16
    • Wu, F.H.1    Shen, S.C.2    Lee, L.Y.3
  • 41
    • 34447099171 scopus 로고    scopus 로고
    • Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
    • Yoo SD, Cho YH, Sheen J (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc 2:1565–1572
    • (2007) Nat Protoc , vol.2 , pp. 1565-1572
    • Yoo, S.D.1    Cho, Y.H.2    Sheen, J.3
  • 42
    • 78249238807 scopus 로고    scopus 로고
    • Isolation of plant DNA for PCR and genotyping using organic extraction and CTAB
    • Springer NM (2010) Isolation of plant DNA for PCR and genotyping using organic extraction and CTAB. CSH Protoc. doi:10.1101/pdb.prot5515
    • (2010) CSH Protoc
    • Springer, N.M.1
  • 43
    • 0032078072 scopus 로고    scopus 로고
    • dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics
    • Neff MM, Neff JD, Chory J et al (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 14:387–392
    • (1998) Plant J , vol.14 , pp. 387-392
    • Neff, M.M.1    Neff, J.D.2    Chory, J.3
  • 44
    • 1842579613 scopus 로고    scopus 로고
    • Mutation detection using Surveyor nuclease
    • Qiu P, Shandilya H, D’alessio JM et al (2004) Mutation detection using Surveyor nuclease. Biotechniques 36:702–707
    • (2004) Biotechniques , vol.36 , pp. 702-707
    • Qiu, P.1    Shandilya, H.2    D’alessio, J.M.3
  • 45
    • 84880117972 scopus 로고    scopus 로고
    • Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish
    • Xiao A, Wang Z, Hu Y et al (2013) Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish. Nucleic Acids Res 41:e141
    • (2013) Nucleic Acids Res , vol.41 , pp. e141
    • Xiao, A.1    Wang, Z.2    Hu, Y.3
  • 46
    • 84905388288 scopus 로고    scopus 로고
    • Characterization of genomic deletion efficiency mediated by clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells
    • Canver MC, Bauer DE, Dass A et al (2014) Characterization of genomic deletion efficiency mediated by clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells. J Biol Chem 289:21312–21324
    • (2014) J Biol Chem , vol.289 , pp. 21312-21324
    • Canver, M.C.1    Bauer, D.E.2    Dass, A.3
  • 47
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang W, Bikard D, Cox D et al (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31:233–239
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3
  • 48
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang T, Wei JJ, Sabatini DM et al (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science 343:80–84
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3
  • 49
    • 77950452042 scopus 로고    scopus 로고
    • Linking genotype to phenotype using the Arabidopsis unimutant collection
    • O’malley RC, Ecker JR (2010) Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J 61:928–940
    • (2010) Plant J , vol.61 , pp. 928-940
    • O’malley, R.C.1    Ecker, J.R.2
  • 50
    • 0032506226 scopus 로고    scopus 로고
    • Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA
    • Waterhouse PM, Graham MW, Wang MB (1998) Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc Natl Acad Sci USA 95:13959–13964
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 13959-13964
    • Waterhouse, P.M.1    Graham, M.W.2    Wang, M.B.3
  • 51
    • 84911465571 scopus 로고    scopus 로고
    • Target specificity of the CRISPR-Cas9 system
    • Wu X, Kriz AJ, Sharp PA (2015) Target specificity of the CRISPR-Cas9 system. Quant Biol 2:59–70
    • (2015) Quant Biol , vol.2 , pp. 59-70
    • Wu, X.1    Kriz, A.J.2    Sharp, P.A.3
  • 52
    • 84925262435 scopus 로고    scopus 로고
    • Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system
    • Xie K, Minkenberg B, Yang Y (2015) Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc Natl Acad Sci USA 112:3570–3575
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 3570-3575
    • Xie, K.1    Minkenberg, B.2    Yang, Y.3
  • 53
    • 84896882685 scopus 로고    scopus 로고
    • DNA replicons for plant genome engineering
    • Baltes NJ, Gil-Humanes J, Cermak T et al (2014) DNA replicons for plant genome engineering. Plant Cell 26:151–163
    • (2014) Plant Cell , vol.26 , pp. 151-163
    • Baltes, N.J.1    Gil-Humanes, J.2    Cermak, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.