메뉴 건너뛰기




Volumn 17, Issue 9, 2015, Pages 3407-3426

Ruminococcal cellulosome systems from rumen to human

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; CELL CYCLE PROTEIN; CELLULOSE; CELLULOSOME; COHESIN; MULTIENZYME COMPLEX; NONHISTONE PROTEIN;

EID: 84941024989     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12868     Document Type: Article
Times cited : (88)

References (82)
  • 3
    • 27744458385 scopus 로고    scopus 로고
    • Matching fusion-protein systems for affinity analysis of two interacting families of proteins: the cohesin-dockerin interaction
    • Barak, Y., Handelsman, T., Nakar, D., Mechaly, A., Lamed, R., Shoham, Y., and Bayer, E.A. (2005) Matching fusion-protein systems for affinity analysis of two interacting families of proteins: the cohesin-dockerin interaction. J Mol Recognit 18: 491-501.
    • (2005) J Mol Recognit , vol.18 , pp. 491-501
    • Barak, Y.1    Handelsman, T.2    Nakar, D.3    Mechaly, A.4    Lamed, R.5    Shoham, Y.6    Bayer, E.A.7
  • 4
    • 0021078758 scopus 로고
    • Adherence of Clostridium thermocellum to cellulose
    • Bayer, E.A., Kenig, R., and Lamed, R. (1983) Adherence of Clostridium thermocellum to cellulose. J Bacteriol 156: 818-827.
    • (1983) J Bacteriol , vol.156 , pp. 818-827
    • Bayer, E.A.1    Kenig, R.2    Lamed, R.3
  • 6
    • 4143139469 scopus 로고    scopus 로고
    • The cellulosomes: multi-enzyme machines for degradation of plant cell wall polysaccharides
    • Bayer, E.A., Belaich, J.-P., Shoham, Y., and Lamed, R. (2004) The cellulosomes: multi-enzyme machines for degradation of plant cell wall polysaccharides. Annu Rev Microbiol 58: 521-554.
    • (2004) Annu Rev Microbiol , vol.58 , pp. 521-554
    • Bayer, E.A.1    Belaich, J.-P.2    Shoham, Y.3    Lamed, R.4
  • 7
    • 34249949390 scopus 로고    scopus 로고
    • The potential of cellulases and cellulosomes for cellulosic waste management
    • Bayer, E.A., Lamed, R., and Himmel, M.E. (2007) The potential of cellulases and cellulosomes for cellulosic waste management. Curr Opin Biotechnol 18: 237-245.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 237-245
    • Bayer, E.A.1    Lamed, R.2    Himmel, M.E.3
  • 9
    • 84891372271 scopus 로고    scopus 로고
    • The prokaryotes: lignocellulose-decomposing bacteria and their enzyme systems
    • In 4th edn. Rosenberg, E. (ed.). Berlin, Germany: Springer-Verlag.
    • Bayer, E.A., Shoham, Y., and Lamed, R. (2013) The prokaryotes: lignocellulose-decomposing bacteria and their enzyme systems. In The Prokaryotes, 4th edn. Rosenberg, E. (ed.). Berlin, Germany: Springer-Verlag, pp. 216-266.
    • (2013) The Prokaryotes , pp. 216-266
    • Bayer, E.A.1    Shoham, Y.2    Lamed, R.3
  • 10
    • 0021178639 scopus 로고
    • Characterization of plant polysaccharide- and mucin-fermenting anaerobic bacteria from human feces
    • Bayliss, C.E., and Houston, A.P. (1984) Characterization of plant polysaccharide- and mucin-fermenting anaerobic bacteria from human feces. Appl Environ Microbiol 48: 626-632.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 626-632
    • Bayliss, C.E.1    Houston, A.P.2
  • 11
    • 84867238386 scopus 로고    scopus 로고
    • Multidomain carbohydrate-binding proteins involved in Bacteroides thetaiotaomicron starch metabolism
    • Cameron, E.A., Maynard, M.A., Smith, C.J., Smith, T.J., Koropatkin, N.M., and Martens, E.C. (2012) Multidomain carbohydrate-binding proteins involved in Bacteroides thetaiotaomicron starch metabolism. J Biol Chem 287: 34614-34625.
    • (2012) J Biol Chem , vol.287 , pp. 34614-34625
    • Cameron, E.A.1    Maynard, M.A.2    Smith, C.J.3    Smith, T.J.4    Koropatkin, N.M.5    Martens, E.C.6
  • 12
    • 84908409041 scopus 로고    scopus 로고
    • Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis
    • Cameron, E.A., Kwiatkowski, K.J., Lee, B.H., Hamaker, B.R., Koropatkin, N.M., and Martens, E.C. (2014) Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis. MBio 5: e1441-14.
    • (2014) MBio , vol.5 , pp. e1414-e1441
    • Cameron, E.A.1    Kwiatkowski, K.J.2    Lee, B.H.3    Hamaker, B.R.4    Koropatkin, N.M.5    Martens, E.C.6
  • 13
  • 16
    • 77956506937 scopus 로고    scopus 로고
    • The cellulose-degrading microbial community of the human gut varies according to the presence or absence of methanogens
    • Chassard, C., Delmas, E., Robert, C., and Bernalier-Donadille, A. (2010) The cellulose-degrading microbial community of the human gut varies according to the presence or absence of methanogens. FEMS Microbiol Ecol 74: 205-213.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 205-213
    • Chassard, C.1    Delmas, E.2    Robert, C.3    Bernalier-Donadille, A.4
  • 17
  • 18
    • 0035205390 scopus 로고    scopus 로고
    • Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron
    • Cho, K.H., and Salyers, A.A. (2001) Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron. J Bacteriol 183: 7224-7230.
    • (2001) J Bacteriol , vol.183 , pp. 7224-7230
    • Cho, K.H.1    Salyers, A.A.2
  • 19
    • 84922629682 scopus 로고    scopus 로고
    • Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism
    • Cuskin, F., Lowe, E.C., Temple, M.J., Zhu, Y., Cameron, E.A., Pudlo, N.A., etal. (2015) Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism. Nature 517: 165-169.
    • (2015) Nature , vol.517 , pp. 165-169
    • Cuskin, F.1    Lowe, E.C.2    Temple, M.J.3    Zhu, Y.4    Cameron, E.A.5    Pudlo, N.A.6
  • 20
    • 0030864850 scopus 로고    scopus 로고
    • Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases
    • Dalrymple, B.P., Cybinski, D.H., Layton, I., McSweeney, C.S., Xue, G.P., Swadling, Y.J., and Lowry, J.B. (1997) Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases. Microbiology 143 (Part 8): 2605-2614.
    • (1997) Microbiology , vol.143 , pp. 2605-2614
    • Dalrymple, B.P.1    Cybinski, D.H.2    Layton, I.3    McSweeney, C.S.4    Xue, G.P.5    Swadling, Y.J.6    Lowry, J.B.7
  • 21
    • 84903755330 scopus 로고    scopus 로고
    • Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains
    • Dassa, B., Borovok, I., Ruimy-Israeli, V., Lamed, R., Flint, H.J., Duncan, S.H., etal. (2014) Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains. PLoS ONE 9: e99221.
    • (2014) PLoS ONE , vol.9 , pp. e99221
    • Dassa, B.1    Borovok, I.2    Ruimy-Israeli, V.3    Lamed, R.4    Flint, H.J.5    Duncan, S.H.6
  • 23
    • 0030479827 scopus 로고    scopus 로고
    • Contribution of a neopullulanase, a pullulanase, and an alpha-glucosidase to growth of Bacteroides thetaiotaomicron on starch
    • D'Elia, J.N., and Salyers, A.A. (1996) Contribution of a neopullulanase, a pullulanase, and an alpha-glucosidase to growth of Bacteroides thetaiotaomicron on starch. J Bacteriol 178: 7173-7179.
    • (1996) J Bacteriol , vol.178 , pp. 7173-7179
    • D'Elia, J.N.1    Salyers, A.A.2
  • 24
    • 33847233644 scopus 로고    scopus 로고
    • Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
    • Duncan, S.H., Belenguer, A., Holtrop, G., Johnstone, A.M., Flint, H.J., and Lobley, G.E. (2007) Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol 73: 1073-1078.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1073-1078
    • Duncan, S.H.1    Belenguer, A.2    Holtrop, G.3    Johnstone, A.M.4    Flint, H.J.5    Lobley, G.E.6
  • 26
    • 41349093562 scopus 로고    scopus 로고
    • Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract
    • Flint, H.J., and Bayer, E.A. (2008) Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract. Ann N Y Acad Sci 1125: 280-288.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 280-288
    • Flint, H.J.1    Bayer, E.A.2
  • 27
    • 34247882011 scopus 로고    scopus 로고
    • Interactions and competition within the microbial community of the human colon: links between diet and health
    • Flint, H.J., Duncan, S.H., Scott, K.P., and Louis, P. (2007) Interactions and competition within the microbial community of the human colon: links between diet and health. Environ Microbiol 9: 1101-1111.
    • (2007) Environ Microbiol , vol.9 , pp. 1101-1111
    • Flint, H.J.1    Duncan, S.H.2    Scott, K.P.3    Louis, P.4
  • 28
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
    • Flint, H.J., Bayer, E.A., Rincon, M.T., Lamed, R., and White, B.A. (2008) Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat Rev Microbiol 6: 121-131.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2    Rincon, M.T.3    Lamed, R.4    White, B.A.5
  • 30
    • 78650140494 scopus 로고    scopus 로고
    • Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules
    • Fraiberg, M., Borovok, I., Bayer, E.A., Weiner, R.M., and Lamed, R. (2011) Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules. J Bacteriol 193: 283-285.
    • (2011) J Bacteriol , vol.193 , pp. 283-285
    • Fraiberg, M.1    Borovok, I.2    Bayer, E.A.3    Weiner, R.M.4    Lamed, R.5
  • 31
    • 69949123813 scopus 로고    scopus 로고
    • Identifying genetic determinants needed to establish a human gut symbiont in its habitat
    • Goodman, A.L., McNulty, N.P., Zhao, Y., Leip, D., Mitra, R.D., Lozupone, C.A., etal. (2009) Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 6: 279-289.
    • (2009) Cell Host Microbe , vol.6 , pp. 279-289
    • Goodman, A.L.1    McNulty, N.P.2    Zhao, Y.3    Leip, D.4    Mitra, R.D.5    Lozupone, C.A.6
  • 32
    • 41149118473 scopus 로고    scopus 로고
    • Cohesin-dockerin microarray: diverse specificities between two complementary families of interacting protein modules
    • Haimovitz, R., Barak, Y., Morag, E., Voronov-Goldman, M., Shoham, Y., Lamed, R., and Bayer, E.A. (2008) Cohesin-dockerin microarray: diverse specificities between two complementary families of interacting protein modules. Proteomics 8: 968-979.
    • (2008) Proteomics , vol.8 , pp. 968-979
    • Haimovitz, R.1    Barak, Y.2    Morag, E.3    Voronov-Goldman, M.4    Shoham, Y.5    Lamed, R.6    Bayer, E.A.7
  • 33
    • 4143061576 scopus 로고    scopus 로고
    • Cohesin-dockerin interaction in cellulosome assembly: a single Asp-to-Asn mutation disrupts high-affinity cohesin-dockerin binding
    • Handelsman, T., Barak, Y., Nakar, D., Mechaly, A., Lamed, R., Shoham, Y., and Bayer, E.A. (2004) Cohesin-dockerin interaction in cellulosome assembly: a single Asp-to-Asn mutation disrupts high-affinity cohesin-dockerin binding. FEBS Lett 572: 195-200.
    • (2004) FEBS Lett , vol.572 , pp. 195-200
    • Handelsman, T.1    Barak, Y.2    Nakar, D.3    Mechaly, A.4    Lamed, R.5    Shoham, Y.6    Bayer, E.A.7
  • 34
    • 77950847866 scopus 로고    scopus 로고
    • Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
    • Hehemann, J.H., Correc, G., Barbeyron, T., Helbert, W., Czjzek, M., and Michel, G. (2010) Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 464: 908-912.
    • (2010) Nature , vol.464 , pp. 908-912
    • Hehemann, J.H.1    Correc, G.2    Barbeyron, T.3    Helbert, W.4    Czjzek, M.5    Michel, G.6
  • 35
    • 47349130717 scopus 로고    scopus 로고
    • Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens
    • Jindou, S., Brulc, J.M., Levy-Assaraf, M., Rincon, M.T., Flint, H.J., Berg, M.E., etal. (2008) Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens. FEMS Microbiol Lett 285: 188-194.
    • (2008) FEMS Microbiol Lett , vol.285 , pp. 188-194
    • Jindou, S.1    Brulc, J.M.2    Levy-Assaraf, M.3    Rincon, M.T.4    Flint, H.J.5    Berg, M.E.6
  • 36
    • 40449093567 scopus 로고    scopus 로고
    • Functional asymmetry in cohesin binding belies inherent symmetry of the dockerin module: insight into cellulosome assembly revealed by systematic mutagenesis
    • Karpol, A., Barak, Y., Lamed, R., Shoham, Y., and Bayer, E.A. (2008) Functional asymmetry in cohesin binding belies inherent symmetry of the dockerin module: insight into cellulosome assembly revealed by systematic mutagenesis. Biochem J 410: 331-338.
    • (2008) Biochem J , vol.410 , pp. 331-338
    • Karpol, A.1    Barak, Y.2    Lamed, R.3    Shoham, Y.4    Bayer, E.A.5
  • 37
    • 84920911921 scopus 로고    scopus 로고
    • Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts
    • Karunatilaka, K.S., Cameron, E.A., Martens, E.C., Koropatkin, N.M., and Biteen, J.S. (2014) Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts. MBio 5: e02172.
    • (2014) MBio , vol.5 , pp. e02172
    • Karunatilaka, K.S.1    Cameron, E.A.2    Martens, E.C.3    Koropatkin, N.M.4    Biteen, J.S.5
  • 38
    • 79251495453 scopus 로고    scopus 로고
    • Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome
    • Kerckhoffs, A.P., Ben-Amor, K., Samsom, M., van der Rest, M.E., de Vogel, J., Knol, J., and Akkermans, L.M. (2011) Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome. J Med Microbiol 60: 236-245.
    • (2011) J Med Microbiol , vol.60 , pp. 236-245
    • Kerckhoffs, A.P.1    Ben-Amor, K.2    Samsom, M.3    van der Rest, M.E.4    de Vogel, J.5    Knol, J.6    Akkermans, L.M.7
  • 39
    • 75849119359 scopus 로고    scopus 로고
    • SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules
    • Koropatkin, N.M., and Smith, T.J. (2010) SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. Structure 18: 200-215.
    • (2010) Structure , vol.18 , pp. 200-215
    • Koropatkin, N.M.1    Smith, T.J.2
  • 40
    • 46049115447 scopus 로고    scopus 로고
    • Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices
    • Koropatkin, N.M., Martens, E.C., Gordon, J.I., and Smith, T.J. (2008) Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure 16: 1105-1115.
    • (2008) Structure , vol.16 , pp. 1105-1115
    • Koropatkin, N.M.1    Martens, E.C.2    Gordon, J.I.3    Smith, T.J.4
  • 41
    • 84896734943 scopus 로고    scopus 로고
    • A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
    • Larsbrink, J., Rogers, T.E., Hemsworth, G.R., McKee, L.S., Tauzin, A.S., Spadiut, O., etal. (2014) A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes. Nature 506: 498-502.
    • (2014) Nature , vol.506 , pp. 498-502
    • Larsbrink, J.1    Rogers, T.E.2    Hemsworth, G.R.3    McKee, L.S.4    Tauzin, A.S.5    Spadiut, O.6
  • 42
    • 0017661523 scopus 로고
    • Fermentation of cellulose by Ruminococcus flavefaciens in the presence and absence of Methanobacterium ruminantium
    • Latham, M.J., and Wolin, M.J. (1977) Fermentation of cellulose by Ruminococcus flavefaciens in the presence and absence of Methanobacterium ruminantium. Appl Environ Microbiol 34: 297-301.
    • (1977) Appl Environ Microbiol , vol.34 , pp. 297-301
    • Latham, M.J.1    Wolin, M.J.2
  • 43
    • 78650647326 scopus 로고    scopus 로고
    • Has the microbiota played a critical role in the evolution of the adaptive immune system?
    • Lee, Y.K., and Mazmanian, S.K. (2010) Has the microbiota played a critical role in the evolution of the adaptive immune system? Science 330: 1768-1773.
    • (2010) Science , vol.330 , pp. 1768-1773
    • Lee, Y.K.1    Mazmanian, S.K.2
  • 45
    • 0000328650 scopus 로고    scopus 로고
    • Carbohydrate fermentation, energy transduction and gas metabolism in the human large intestine
    • In Springer US.
    • Macfarlane, G.T., and Gibson, G.R. (1997) Carbohydrate fermentation, energy transduction and gas metabolism in the human large intestine. In Gastrointestinal Microbiology. Springer US, pp. 269-318.
    • (1997) Gastrointestinal Microbiology , pp. 269-318
    • Macfarlane, G.T.1    Gibson, G.R.2
  • 46
    • 0021349077 scopus 로고
    • The contribution of the large intestine to energy supplies in man
    • McNeil, N.I. (1984) The contribution of the large intestine to energy supplies in man. Am J Clin Nutr 39: 338-342.
    • (1984) Am J Clin Nutr , vol.39 , pp. 338-342
    • McNeil, N.I.1
  • 47
    • 84883154681 scopus 로고    scopus 로고
    • Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome
    • McNulty, N.P., Wu, M., Erickson, A.R., Pan, C., Erickson, B.K., Martens, E.C., etal. (2013) Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol 11: e1001637.
    • (2013) PLoS Biol , vol.11 , pp. e1001637
    • McNulty, N.P.1    Wu, M.2    Erickson, A.R.3    Pan, C.4    Erickson, B.K.5    Martens, E.C.6
  • 48
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: protein domain annotations on the fly
    • Marchler-Bauer, A., and Bryant, S.H. (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32: W327-W331.
    • (2004) Nucleic Acids Res , vol.32 , pp. W327-W331
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 49
    • 69949094849 scopus 로고    scopus 로고
    • Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm
    • Martens, E.C., Koropatkin, N.M., Smith, T.J., and Gordon, J.I. (2009) Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J Biol Chem 284: 24673-24677.
    • (2009) J Biol Chem , vol.284 , pp. 24673-24677
    • Martens, E.C.1    Koropatkin, N.M.2    Smith, T.J.3    Gordon, J.I.4
  • 50
    • 84855173898 scopus 로고    scopus 로고
    • Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
    • Martens, E.C., Lowe, E.C., Chiang, H., Pudlo, N.A., Wu, M., McNulty, N.P., etal. (2011) Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol 9: e1001221.
    • (2011) PLoS Biol , vol.9 , pp. e1001221
    • Martens, E.C.1    Lowe, E.C.2    Chiang, H.3    Pudlo, N.A.4    Wu, M.5    McNulty, N.P.6
  • 51
    • 0035971154 scopus 로고    scopus 로고
    • Cohesin-dockerin interaction in cellulosome assembly: a single hydroxyl group of a dockerin domain distinguishes between non-recognition and high-affinity recognition
    • Mechaly, A., Fierobe, H.-P., Belaich, A., Belaich, J.-P., Lamed, R., Shoham, Y., and Bayer, E.A. (2001) Cohesin-dockerin interaction in cellulosome assembly: a single hydroxyl group of a dockerin domain distinguishes between non-recognition and high-affinity recognition. J Biol Chem 276: 9883-9888.
    • (2001) J Biol Chem , vol.276 , pp. 9883-9888
    • Mechaly, A.1    Fierobe, H.-P.2    Belaich, A.3    Belaich, J.-P.4    Lamed, R.5    Shoham, Y.6    Bayer, E.A.7
  • 52
    • 0030945066 scopus 로고    scopus 로고
    • Role of scaffolding protein CipC of Clostridium cellulolyticum in cellulose degradation
    • Pages, S., Gal, L., Belaich, A., Gaudin, C., Tardif, C., and Belaich, J.P. (1997a) Role of scaffolding protein CipC of Clostridium cellulolyticum in cellulose degradation. J Bacteriol 179: 2810-2816.
    • (1997) J Bacteriol , vol.179 , pp. 2810-2816
    • Pages, S.1    Gal, L.2    Belaich, A.3    Gaudin, C.4    Tardif, C.5    Belaich, J.P.6
  • 53
    • 0343229549 scopus 로고    scopus 로고
    • Species-specificity of the cohesin-dockerin interaction between Clostridium thermocellum and Clostridium cellulolyticum: prediction of specificity determinants of the dockerin domain
    • Pages, S., Belaich, A., Belaich, J.-P., Morag, E., Lamed, R., Shoham, Y., and Bayer, E.A. (1997b) Species-specificity of the cohesin-dockerin interaction between Clostridium thermocellum and Clostridium cellulolyticum: prediction of specificity determinants of the dockerin domain. Proteins 29: 517-527.
    • (1997) Proteins , vol.29 , pp. 517-527
    • Pages, S.1    Belaich, A.2    Belaich, J.-P.3    Morag, E.4    Lamed, R.5    Shoham, Y.6    Bayer, E.A.7
  • 54
    • 58149277107 scopus 로고    scopus 로고
    • Noncellulosomal cohesin- and dockerin-like modules in the three domains of life
    • Peer, A., Smith, S.P., Bayer, E.A., Lamed, R., and Borovok, I. (2009) Noncellulosomal cohesin- and dockerin-like modules in the three domains of life. FEMS Microbiol Lett 291: 1-16.
    • (2009) FEMS Microbiol Lett , vol.291 , pp. 1-16
    • Peer, A.1    Smith, S.P.2    Bayer, E.A.3    Lamed, R.4    Borovok, I.5
  • 55
    • 73149122122 scopus 로고    scopus 로고
    • Functional insights into the role of novel type I cohesin and dockerin domains from Clostridium thermocellum
    • Pinheiro, B.A., Gilbert, H.J., Sakka, K., Sakka, K., Fernandes, V.O., Prates, J.A., etal. (2009) Functional insights into the role of novel type I cohesin and dockerin domains from Clostridium thermocellum. Biochem J 424: 375-384.
    • (2009) Biochem J , vol.424 , pp. 375-384
    • Pinheiro, B.A.1    Gilbert, H.J.2    Sakka, K.3    Sakka, K.4    Fernandes, V.O.5    Prates, J.A.6
  • 56
    • 34848868765 scopus 로고    scopus 로고
    • Isolation, characterization, and localization of AgaSGNH cDNA: a new SGNH-motif plant hydrolase specific to Agave americana L. leaf epidermis
    • Reina, J.J., Guerrero, C., and Heredia, A. (2007) Isolation, characterization, and localization of AgaSGNH cDNA: a new SGNH-motif plant hydrolase specific to Agave americana L. leaf epidermis. J Exp Bot 58: 2717-2731.
    • (2007) J Exp Bot , vol.58 , pp. 2717-2731
    • Reina, J.J.1    Guerrero, C.2    Heredia, A.3
  • 57
    • 1942539976 scopus 로고    scopus 로고
    • ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome
    • Rincon, M.T., Martin, J.C., Aurilia, V., McCrae, S.I., Rucklidge, G.J., Reid, M.D., etal. (2004) ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome. J Bacteriol 186: 2576-2585.
    • (2004) J Bacteriol , vol.186 , pp. 2576-2585
    • Rincon, M.T.1    Martin, J.C.2    Aurilia, V.3    McCrae, S.I.4    Rucklidge, G.J.5    Reid, M.D.6
  • 58
    • 27744600973 scopus 로고    scopus 로고
    • Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface
    • Rincon, M.T., Cepeljnik, T., Martin, J.C., Lamed, R., Barak, Y., Bayer, E.A., and Flint, H.J. (2005) Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface. J Bacteriol 187: 7569-7578.
    • (2005) J Bacteriol , vol.187 , pp. 7569-7578
    • Rincon, M.T.1    Cepeljnik, T.2    Martin, J.C.3    Lamed, R.4    Barak, Y.5    Bayer, E.A.6    Flint, H.J.7
  • 59
    • 34347369555 scopus 로고    scopus 로고
    • A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens
    • Rincon, M.T., Cepeljnik, T., Martin, J.C., Barak, Y., Lamed, R., Bayer, E.A., and Flint, H.J. (2007) A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens. J Bacteriol 189: 4774-4783.
    • (2007) J Bacteriol , vol.189 , pp. 4774-4783
    • Rincon, M.T.1    Cepeljnik, T.2    Martin, J.C.3    Barak, Y.4    Lamed, R.5    Bayer, E.A.6    Flint, H.J.7
  • 60
    • 77957935787 scopus 로고    scopus 로고
    • Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1
    • Rincon, M.T., Dassa, B., Flint, H.J., Travis, A.J., Jindou, S., Borovok, I., etal. (2010) Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. PLoS ONE 5: e12476.
    • (2010) PLoS ONE , vol.5 , pp. e12476
    • Rincon, M.T.1    Dassa, B.2    Flint, H.J.3    Travis, A.J.4    Jindou, S.5    Borovok, I.6
  • 61
    • 0142123359 scopus 로고    scopus 로고
    • The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects
    • Robert, C., and Bernalier-Donadille, A. (2003) The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects. FEMS Microbiol Ecol 46: 81-89.
    • (2003) FEMS Microbiol Ecol , vol.46 , pp. 81-89
    • Robert, C.1    Bernalier-Donadille, A.2
  • 62
    • 34547421701 scopus 로고    scopus 로고
    • Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community
    • Robert, C., Chassard, C., Lawson, P.A., and Bernalier-Donadille, A. (2007) Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community. Int J Syst Evol Microbiol 57: 1516-1520.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1516-1520
    • Robert, C.1    Chassard, C.2    Lawson, P.A.3    Bernalier-Donadille, A.4
  • 63
    • 0017750010 scopus 로고
    • Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon
    • Salyers, A.A., West, S.E., Vercellotti, J.R., and Wilkins, T.D. (1977) Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon. Appl Environ Microbiol 34: 529-533.
    • (1977) Appl Environ Microbiol , vol.34 , pp. 529-533
    • Salyers, A.A.1    West, S.E.2    Vercellotti, J.R.3    Wilkins, T.D.4
  • 64
    • 57349131283 scopus 로고    scopus 로고
    • Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces
    • Scanlan, P.D., and Marchesi, J.R. (2008) Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces. ISME J 2: 1183-1193.
    • (2008) ISME J , vol.2 , pp. 1183-1193
    • Scanlan, P.D.1    Marchesi, J.R.2
  • 66
    • 0033802036 scopus 로고    scopus 로고
    • Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron
    • Shipman, J.A., Berleman, J.E., and Salyers, A.A. (2000) Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron. J Bacteriol 182: 5365-5372.
    • (2000) J Bacteriol , vol.182 , pp. 5365-5372
    • Shipman, J.A.1    Berleman, J.E.2    Salyers, A.A.3
  • 67
    • 0033167973 scopus 로고    scopus 로고
    • The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides
    • Shoham, Y., Lamed, R., and Bayer, E.A. (1999) The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides. Trends Microbiol 7: 275-281.
    • (1999) Trends Microbiol , vol.7 , pp. 275-281
    • Shoham, Y.1    Lamed, R.2    Bayer, E.A.3
  • 68
    • 84861173635 scopus 로고    scopus 로고
    • Measurements of relative binding of cohesin and dockerin mutants using an advanced ELISA technique for high-affinity interactions
    • Slutzki, M., Barak, Y., Reshef, D., Schueler-Furman, O., Lamed, R., and Bayer, E.A. (2012a) Measurements of relative binding of cohesin and dockerin mutants using an advanced ELISA technique for high-affinity interactions. Methods Enzymol 510: 417-428.
    • (2012) Methods Enzymol , vol.510 , pp. 417-428
    • Slutzki, M.1    Barak, Y.2    Reshef, D.3    Schueler-Furman, O.4    Lamed, R.5    Bayer, E.A.6
  • 69
    • 84868149546 scopus 로고    scopus 로고
    • Indirect ELISA-based approach for comparative measurement of high-affinity cohesin-dockerin interactions
    • Slutzki, M., Barak, Y., Reshef, D., Schueler-Furman, O., Lamed, R., and Bayer, E.A. (2012b) Indirect ELISA-based approach for comparative measurement of high-affinity cohesin-dockerin interactions. J Mol Recognit 25: 616-622.
    • (2012) J Mol Recognit , vol.25 , pp. 616-622
    • Slutzki, M.1    Barak, Y.2    Reshef, D.3    Schueler-Furman, O.4    Lamed, R.5    Bayer, E.A.6
  • 71
    • 75149150388 scopus 로고    scopus 로고
    • TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses
    • Stöver, B.C., and Müller, K.F. (2010) TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC bioinformatics 11: 7.
    • (2010) BMC bioinformatics , vol.11 , pp. 7
    • Stöver, B.C.1    Müller, K.F.2
  • 73
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh, P.J., Ley, R.E., Mahowald, M.A., Magrini, V., Mardis, E.R., and Gordon, J.I. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 74
    • 84879521635 scopus 로고    scopus 로고
    • Gut microbiota and type 1 diabetes
    • Vaarala, O. (2012) Gut microbiota and type 1 diabetes. Rev Diabet Stud 9: 251-259.
    • (2012) Rev Diabet Stud , vol.9 , pp. 251-259
    • Vaarala, O.1
  • 75
    • 49749121708 scopus 로고    scopus 로고
    • The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities
    • Walker, A.W., Duncan, S.H., Harmsen, H.J., Holtrop, G., Welling, G.W., and Flint, H.J. (2008) The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities. Environ Microbiol 10: 3275-3283.
    • (2008) Environ Microbiol , vol.10 , pp. 3275-3283
    • Walker, A.W.1    Duncan, S.H.2    Harmsen, H.J.3    Holtrop, G.4    Welling, G.W.5    Flint, H.J.6
  • 76
    • 78751580602 scopus 로고    scopus 로고
    • Dominant and diet-responsive groups of bacteria within the human colonic microbiota
    • Walker, A.W., Ince, J., Duncan, S.H., Webster, L.M., Holtrop, G., Ze, X., etal. (2011) Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J 5: 220-230.
    • (2011) ISME J , vol.5 , pp. 220-230
    • Walker, A.W.1    Ince, J.2    Duncan, S.H.3    Webster, L.M.4    Holtrop, G.5    Ze, X.6
  • 78
    • 0037470975 scopus 로고    scopus 로고
    • A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
    • Xu, J., Bjursell, M.K., Himrod, J., Deng, S., Carmichael, L.K., Chiang, H.C., etal. (2003) A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299: 2074-2076.
    • (2003) Science , vol.299 , pp. 2074-2076
    • Xu, J.1    Bjursell, M.K.2    Himrod, J.3    Deng, S.4    Carmichael, L.K.5    Chiang, H.C.6
  • 79
    • 0028936572 scopus 로고
    • Expression, purification and subunit-binding properties of cohesins 2 and 3 of the Clostridium thermocellum cellulosome
    • Yaron, S., Morag, E., Bayer, E.A., Lamed, R., and Shoham, Y. (1995) Expression, purification and subunit-binding properties of cohesins 2 and 3 of the Clostridium thermocellum cellulosome. FEBS Lett 360: 121-124.
    • (1995) FEBS Lett , vol.360 , pp. 121-124
    • Yaron, S.1    Morag, E.2    Bayer, E.A.3    Lamed, R.4    Shoham, Y.5
  • 80
    • 20744452605 scopus 로고    scopus 로고
    • Dietary fibre and colorectal cancer: a model for environment-gene interactions
    • Young, G.P., Hu, Y., Le Leu, R.K., and Nyskohus, L. (2005) Dietary fibre and colorectal cancer: a model for environment-gene interactions. Mol Nutr Food Res 49: 571-584.
    • (2005) Mol Nutr Food Res , vol.49 , pp. 571-584
    • Young, G.P.1    Hu, Y.2    Le Leu, R.K.3    Nyskohus, L.4
  • 81
    • 84863990011 scopus 로고    scopus 로고
    • Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
    • Ze, X., Duncan, S.H., Louis, P., and Flint, H.J. (2012) Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon. ISME J 6: 1535-1543.
    • (2012) ISME J , vol.6 , pp. 1535-1543
    • Ze, X.1    Duncan, S.H.2    Louis, P.3    Flint, H.J.4
  • 82
    • 84877356167 scopus 로고    scopus 로고
    • Some are more equal than others: the role of 'keystone' species in the degradation of recalcitrant substrates
    • Ze, X., Le Mougen, F., Duncan, S.H., Louis, P., and Flint, H.J. (2013) Some are more equal than others: the role of 'keystone' species in the degradation of recalcitrant substrates. Gut Microbes 4: 236-240.
    • (2013) Gut Microbes , vol.4 , pp. 236-240
    • Ze, X.1    Le Mougen, F.2    Duncan, S.H.3    Louis, P.4    Flint, H.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.