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Volumn 68, Issue , 2014, Pages 279-296

Biomass utilization by gut microbiomes

Author keywords

Carbohydrate active enzymes (CAZymes); Carbohydrate binding module (CBM); Cohesin; Dockerin; Glycoside hydrolases; Polysaccharide utilization loci (PULs)

Indexed keywords

BINDING PROTEIN; CELL PROTEIN; CELLULOSOME; MICROBIAL ENZYME; OUTER MEMBRANE PROTEIN; PERIPLASMIC PROTEIN; POLYSACCHARIDE;

EID: 84907228460     PISSN: 00664227     EISSN: 15453251     Source Type: Book Series    
DOI: 10.1146/annurev-micro-092412-155618     Document Type: Review
Times cited : (146)

References (117)
  • 2
    • 33748808944 scopus 로고    scopus 로고
    • Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale
    • AminovRI, Walker AW,Duncan SH, HarmsenHJM,WellingGW, FlintHJ. 2006. Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale. Appl. Environ. Microb. 72:6371-6
    • (2006) Appl. Environ. Microb. , vol.72 , pp. 6371-6376
    • Aminov, R.I.1    Walker, A.W.2    Duncan, S.H.3    Harmsen, H.J.M.4    Welling, G.W.5    Flint, H.J.6
  • 3
    • 0024319453 scopus 로고
    • Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes
    • Anderson KL, Salyers AA. 1989. Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes. J. Bacteriol. 171:3192-98
    • (1989) J. Bacteriol. , vol.171 , pp. 3192-3198
    • Anderson, K.L.1    Salyers, A.A.2
  • 4
    • 0024336683 scopus 로고
    • Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron
    • Anderson KL, Salyers AA. 1989. Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron. J. Bacteriol. 171:3199-204
    • (1989) J. Bacteriol. , vol.171 , pp. 3199-3204
    • Anderson, K.L.1    Salyers, A.A.2
  • 8
    • 0027984011 scopus 로고
    • The cellulosome - A treasure-trove for biotechnology
    • Bayer EA, Morag E, Lamed R. 1994. The cellulosome-a treasure-trove for biotechnology. Trends Biotechnol. 12:379-86
    • (1994) Trends Biotechnol. , vol.12 , pp. 379-386
    • Bayer, E.A.1    Morag, E.2    Lamed, R.3
  • 10
    • 84908200827 scopus 로고    scopus 로고
    • Lignocellulose-decomposing bacteria and their enzyme systems
    • ed. E Rosenberg Berlin: Springer-Verlag
    • Bayer EA, Shoham Y, Lamed R. 2013. Lignocellulose-decomposing bacteria and their enzyme systems. In The Prokaryotes, ed. E Rosenberg, pp. 216-66. Berlin: Springer-Verlag
    • (2013) The Prokaryotes , pp. 216-266
    • Bayer, E.A.1    Shoham, Y.2    Lamed, R.3
  • 11
    • 0028088841 scopus 로고
    • The biological degradation of cellulose
    • Beguin P, Aubert JP. 1994. The biological degradation of cellulose. FEMS Microbiol. Rev. 13:25-58
    • (1994) FEMS Microbiol. Rev. , vol.13 , pp. 25-58
    • Beguin, P.1    Aubert, J.P.2
  • 13
    • 4744368323 scopus 로고    scopus 로고
    • Carbohydrate-binding modules: Fine-tuning polysaccharide recognition
    • Boraston AB, Bolam DN, Gilbert HJ, Davies GJ. 2004. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem. J. 382:769-81
    • (2004) Biochem. J. , vol.382 , pp. 769-781
    • Boraston, A.B.1    Bolam, D.N.2    Gilbert, H.J.3    Davies, G.J.4
  • 14
    • 0026448264 scopus 로고
    • Purification and partial characterization of two feruloyl esterases from the anaerobic fungus Neocallimastix strain MC-2
    • Borneman WS, Ljungdahl LG, Hartley RD, Akin DE. 1992. Purification and partial characterization of two feruloyl esterases from the anaerobic fungus Neocallimastix strain MC-2. Appl. Environ. Microbiol. 58:3762-66
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3762-3766
    • Borneman, W.S.1    Ljungdahl, L.G.2    Hartley, R.D.3    Akin, D.E.4
  • 15
    • 0026590102 scopus 로고
    • Molecular evolution of the fungi: Relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes
    • Bowman BH, Taylor JW, Brownlee AG, Lee J, Lu SD, White TJ. 1992. Molecular evolution of the fungi: relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes. Mol. Biol. Evol. 9:285-96
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 285-296
    • Bowman, B.H.1    Taylor, J.W.2    Brownlee, A.G.3    Lee, J.4    Lu, S.D.5    White, T.J.6
  • 16
    • 0034056171 scopus 로고    scopus 로고
    • Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive
    • Brookman JL, Ozkose E, Rogers S, Trinci APJ, Theodorou MK. 2000. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31:261-67
    • (2000) FEMS Microbiol. Ecol. , vol.31 , pp. 261-267
    • Brookman, J.L.1    Ozkose, E.2    Rogers, S.3    Trinci, A.P.J.4    Theodorou, M.K.5
  • 19
    • 77956506937 scopus 로고    scopus 로고
    • The cellulose-degrading microbial community of the human gut varies according to the presence or absence of methanogens
    • Chassard C, Delmas E, Robert C, Bernalier-Donadille A. 2010. The cellulose-degrading microbial community of the human gut varies according to the presence or absence of methanogens. FEMS Microbiol. Ecol. 74:205-13
    • (2010) FEMS Microbiol. Ecol. , vol.74 , pp. 205-213
    • Chassard, C.1    Delmas, E.2    Robert, C.3    Bernalier-Donadille, A.4
  • 21
    • 0025855242 scopus 로고
    • The control and consequences of bacterial fermentation in the human colon
    • Cummings JH, Macfarlane GT. 1991. The control and consequences of bacterial fermentation in the human colon. J. Appl. Bacteriol. 70:443-59
    • (1991) J. Appl. Bacteriol. , vol.70 , pp. 443-459
    • Cummings, J.H.1    Macfarlane, G.T.2
  • 22
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo C, Cavalieri D, Di PaolaM, Ramazzotti M, Poullet JB, et al. 2010. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. USA 107:14691-96
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 14691-14696
    • De Filippo, C.1    Cavalieri, D.2    Di Paola, M.3    Ramazzotti, M.4    Poullet, J.B.5
  • 23
    • 0001490216 scopus 로고
    • Rumen microbes and digestion of plant cell walls
    • Demeyer DI. 1981. Rumen microbes and digestion of plant cell walls. Agric. Environ. 6:295-337
    • (1981) Agric. Environ. , vol.6 , pp. 295-337
    • Demeyer, D.I.1
  • 24
    • 0042847292 scopus 로고    scopus 로고
    • Characterisation of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose
    • Devillard E, Bera-Maillet C, Flint HJ, Scott KP, Newbold CJ, et al. 2003. Characterisation of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose. Biochem. J. 373:495-503
    • (2003) Biochem. J. , vol.373 , pp. 495-503
    • Devillard, E.1    Bera-Maillet, C.2    Flint, H.J.3    Scott, K.P.4    Newbold, C.J.5
  • 25
    • 0035108208 scopus 로고    scopus 로고
    • Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens
    • Ding SY, RinconMT, Lamed R,Martin JC, McCrae SI, et al. 2001. Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens. J. Bacteriol. 183:1945-53
    • (2001) J. Bacteriol. , vol.183 , pp. 1945-1953
    • Ding, S.Y.1    Rincon, M.T.2    Lamed, R.3    Martin, J.C.4    McCrae, S.I.5
  • 26
    • 78651112208 scopus 로고    scopus 로고
    • Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes
    • Dodd D, Mackie RI, Cann IK. 2011. Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes. Mol. Microbiol. 79:292-304
    • (2011) Mol. Microbiol. , vol.79 , pp. 292-304
    • Dodd, D.1    Mackie, R.I.2    Cann, I.K.3
  • 27
    • 77956914570 scopus 로고    scopus 로고
    • Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic Bacteroidetes
    • Dodd D, Moon YH, Swaminathan K, Mackie RI, Cann IK. 2010. Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic Bacteroidetes. J. Biol. Chem. 285:30261-73
    • (2010) J. Biol. Chem. , vol.285 , pp. 30261-30273
    • Dodd, D.1    Moon, Y.H.2    Swaminathan, K.3    Mackie, R.I.4    Cann, I.K.5
  • 28
    • 33847233644 scopus 로고    scopus 로고
    • Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrateproducing bacteria in feces
    • Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, Lobley GE. 2007. Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrateproducing bacteria in feces. Appl. Environ. Microbiol. 73:1073-78
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1073-1078
    • Duncan, S.H.1    Belenguer, A.2    Holtrop, G.3    Johnstone, A.M.4    Flint, H.J.5    Lobley, G.E.6
  • 31
    • 57349113816 scopus 로고    scopus 로고
    • Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus
    • Ezer A, Matalon E, Jindou S, Borovok I, AtamnaN, et al. 2008. Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus. J. Bacteriol. 190:8220-22
    • (2008) J. Bacteriol. , vol.190 , pp. 8220-8222
    • Ezer, A.1    Matalon, E.2    Jindou, S.3    Borovok, I.4    Atamna, N.5
  • 32
    • 0033214507 scopus 로고    scopus 로고
    • A modular cinnamoyl ester hydrolase from the anaerobic fungus Piromyces equi acts synergistically with xylanase and is part of a multiprotein cellulose-binding cellulase-hemicellulase complex
    • Fillingham IJ, Kroon PA,Williamson G, Gilbert HJ, Hazlewood GP. 1999. A modular cinnamoyl ester hydrolase from the anaerobic fungus Piromyces equi acts synergistically with xylanase and is part of a multiprotein cellulose-binding cellulase-hemicellulase complex. Biochem. J. 343:215-24
    • (1999) Biochem. J. , vol.343 , pp. 215-224
    • Fillingham, I.J.1    Kroon, P.A.2    Williamson, G.3    Gilbert, H.J.4    Hazlewood, G.P.5
  • 33
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: Potential for new insights from genomic analysis
    • Flint HJ, Bayer EA, Rincon MT, Lamed R, White BA. 2008. Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nature Rev. Microbiol. 6:121-31
    • (2008) Nature Rev. Microbiol. , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2    Rincon, M.T.3    Lamed, R.4    White, B.A.5
  • 35
    • 0027231373 scopus 로고
    • A bifunctional enzyme, with separate xylanase and β(1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens
    • Flint HJ, Martin J, McPherson CA, Daniel AS, Zhang J-X. 1993. A bifunctional enzyme, with separate xylanase and β (1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens. J. Bacteriol. 175:2943-51
    • (1993) J. Bacteriol. , vol.175 , pp. 2943-2951
    • Flint, H.J.1    Martin, J.2    McPherson, C.A.3    Daniel, A.S.4    Zhang, J.-X.5
  • 38
    • 0031031865 scopus 로고    scopus 로고
    • Interrupted catalytic domain structures in xylanases from two distantly related strains of Prevotella ruminicola
    • Flint HJ, Whitehead TR, Martin JC, Gasparic A. 1997. Interrupted catalytic domain structures in xylanases from two distantly related strains of Prevotella ruminicola. Bba-Protein Struct. M 1337:161-5
    • (1997) Bba-Protein Struct. M , vol.1337 , pp. 161-165
    • Flint, H.J.1    Whitehead, T.R.2    Martin, J.C.3    Gasparic, A.4
  • 39
    • 0033995545 scopus 로고    scopus 로고
    • Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
    • Garcia-Vallve S, Romeu A, Palau J. 2000. Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol. Biol. Evol. 17:352-61
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 352-361
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 40
    • 0029146225 scopus 로고
    • A xylan hydrolase gene cluster in Prevotella ruminicola B14: Sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and β-(1,4)-xylosidase activities
    • Gasparic A, Martin J, Daniel AS, Flint HJ. 1995. A xylan hydrolase gene cluster in Prevotella ruminicola B14: sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and β-(1,4)-xylosidase activities. Appl. Environ. Microbiol. 61:2958-64
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2958-2964
    • Gasparic, A.1    Martin, J.2    Daniel, A.S.3    Flint, H.J.4
  • 41
    • 84885472019 scopus 로고    scopus 로고
    • Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules
    • Gilbert HJ, Knox JP, Boraston AB. 2013. Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules. Curr. Opin. Struct. Biol. 23:669-77
    • (2013) Curr. Opin. Struct. Biol. , vol.23 , pp. 669-677
    • Gilbert, H.J.1    Knox, J.P.2    Boraston, A.B.3
  • 42
    • 33846551381 scopus 로고    scopus 로고
    • Biologys next revolution
    • Goldenfeld N, Woese C. 2007. Biologys next revolution. Nature 445:369
    • (2007) Nature , vol.445 , pp. 369
    • Goldenfeld, N.1    Woese, C.2
  • 43
    • 0030733350 scopus 로고    scopus 로고
    • Structural and sequence-based classification of glycoside hydrolases
    • Henrissat B, Davies G. 1997. Structural and sequence-based classification of glycoside hydrolases. Curr. Opin. Struct. Biol. 7:637-44
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 637-644
    • Henrissat, B.1    Davies, G.2
  • 44
    • 3142576882 scopus 로고
    • Ruminal microorganisms-their significance and nutritional value
    • Hespell RB. 1981. Ruminal microorganisms-their significance and nutritional value. Dev. Indust. Microbiol. 22:261-75
    • (1981) Dev. Indust. Microbiol. , vol.22 , pp. 261-275
    • Hespell, R.B.1
  • 45
    • 77952257725 scopus 로고    scopus 로고
    • Microbial enzyme systems for biomass conversion: Emerging paradigms
    • HimmelME, Xu Q, Luo Y, LamedR,Bayer EA. 2010. Microbial enzyme systems for biomass conversion: emerging paradigms. Biofuels 1:323-41
    • (2010) Biofuels , vol.1 , pp. 323-341
    • Himmel, M.E.1    Xu, Q.2    Luo, Y.3    Lamed, R.4    Bayer, E.A.5
  • 46
    • 0017253248 scopus 로고
    • Human fecal flora: Variation in bacterial composition within individuals and a possible effect of emotional stress
    • Holdeman LV, Good IJ, Moore WEC. 1976. Human fecal flora: variation in bacterial composition within individuals and a possible effect of emotional stress. Appl. Environ. Microbiol. 31:359-75
    • (1976) Appl. Environ. Microbiol. , vol.31 , pp. 359-375
    • Holdeman, L.V.1    Good, I.J.2    Moore, W.E.C.3
  • 47
    • 84865224370 scopus 로고    scopus 로고
    • Endo-exo synergism in cellulose hydrolysis revisited
    • Jalak J, Kurasin M, Teugjas H, Valjamae P. 2012. Endo-exo synergism in cellulose hydrolysis revisited. J. Biol. Chem. 287:28802-15
    • (2012) J. Biol. Chem. , vol.287 , pp. 28802-28815
    • Jalak, J.1    Kurasin, M.2    Teugjas, H.3    Valjamae, P.4
  • 48
    • 33751113567 scopus 로고    scopus 로고
    • Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens
    • Jindou S, Borovok I, RinconMT, Flint HJ, Antonopoulos DA, et al. 2006. Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens. J. Bacteriol. 188:7971-76
    • (2006) J. Bacteriol. , vol.188 , pp. 7971-7976
    • Jindou, S.1    Borovok, I.2    Rincon, M.T.3    Flint, H.J.4    Antonopoulos, D.A.5
  • 49
    • 77953143732 scopus 로고    scopus 로고
    • The unique set of putative membrane-associated anti factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation
    • Kahel-Raifer H, Jindou S, Bahari L, Nataf Y, Shoham Y, et al. 2010. The unique set of putative membrane-associated anti factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation. FEMS Microbiol. Lett. 308:84-93
    • (2010) FEMS Microbiol. Lett. , vol.308 , pp. 84-93
    • Kahel-Raifer, H.1    Jindou, S.2    Bahari, L.3    Nataf, Y.4    Shoham, Y.5
  • 50
    • 33744476159 scopus 로고    scopus 로고
    • The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors
    • Kang SH, Barak Y, Lamed R, Bayer EA, Morrison M. 2006. The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors. Mol. Microbiol. 60:1344-54
    • (2006) Mol. Microbiol. , vol.60 , pp. 1344-1354
    • Kang, S.H.1    Barak, Y.2    Lamed, R.3    Bayer, E.A.4    Morrison, M.5
  • 51
    • 0001124343 scopus 로고
    • The structure of plant cellwalls III: Amodel of the walls of suspension-cultured sycamore cells based on the interconnections of the macromolecular components
    • Keegstra K, TalmadgeKW,BauerWD,Albersheim P. 1973. The structure of plant cellwalls III: amodel of the walls of suspension-cultured sycamore cells based on the interconnections of the macromolecular components. Plant Physiol. 51:188-97
    • (1973) Plant Physiol. , vol.51 , pp. 188-197
    • Keegstra, K.1    Talmadge, K.W.2    Bauer, W.D.3    Albersheim, P.4
  • 52
    • 20444400628 scopus 로고    scopus 로고
    • Cellulose: Fascinating biopolymer and sustainable raw material
    • Klemm D, Heublein B, Fink HP, Bohn A. 2005. Cellulose: fascinating biopolymer and sustainable raw material. Angew. Chem. Int. Ed. 44:3358-93
    • (2005) Angew. Chem. Int. Ed. , vol.44 , pp. 3358-3393
    • Klemm, D.1    Heublein, B.2    Fink, H.P.3    Bohn, A.4
  • 53
    • 0027279670 scopus 로고
    • Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry
    • Klieve AV, Swain RA. 1993. Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Appl. Environ. Microbiol. 59:2299-303
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2299-2303
    • Klieve, A.V.1    Swain, R.A.2
  • 55
    • 46049115447 scopus 로고    scopus 로고
    • Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices
    • Koropatkin NM, Martens EC, Gordon JI, Smith TJ. 2008. Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure 16:1105-15
    • (2008) Structure , vol.16 , pp. 1105-1115
    • Koropatkin, N.M.1    Martens, E.C.2    Gordon, J.I.3    Smith, T.J.4
  • 58
    • 84855717953 scopus 로고    scopus 로고
    • Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrate for growth
    • Lopez-Siles M, Khan TM, Duncan SH, Harmsen HJM, Garcia-Gil LJ, et al. 2012. Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrate for growth. Appl. Environ. Microbiol. 78:420-28
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 420-428
    • Lopez-Siles, M.1    Khan, T.M.2    Duncan, S.H.3    Harmsen, H.J.M.4    Garcia-Gil, L.J.5
  • 59
    • 55249108031 scopus 로고    scopus 로고
    • Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
    • Martens EC, Chiang HC, Gordon JI. 2008. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 4:447-57
    • (2008) Cell Host Microbe , vol.4 , pp. 447-457
    • Martens, E.C.1    Chiang, H.C.2    Gordon, J.I.3
  • 60
    • 69949094849 scopus 로고    scopus 로고
    • Complex glycan catabolism by the human gut microbiota: The Bacteroidetes Sus-like paradigm
    • Martens EC, Koropatkin NM, Smith TJ, Gordon JI. 2009. Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284:24673-77
    • (2009) J. Biol. Chem. , vol.284 , pp. 24673-24677
    • Martens, E.C.1    Koropatkin, N.M.2    Smith, T.J.3    Gordon, J.I.4
  • 61
    • 84855173898 scopus 로고    scopus 로고
    • Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
    • Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, et al. 2011. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol. 9:e1001221
    • (2011) PLoS Biol. , vol.9 , pp. e1001221
    • Martens, E.C.1    Lowe, E.C.2    Chiang, H.3    Pudlo, N.A.4    Wu, M.5
  • 62
    • 78649734540 scopus 로고    scopus 로고
    • Resistant starches Types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects
    • Martinez I, Kim J, Duffy PR, Schlegel VL, Walter J. 2010. Resistant starches Types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects. PLoS ONE 5:e15046
    • (2010) PLoS ONE , vol.5 , pp. e15046
    • Martinez, I.1    Kim, J.2    Duffy, P.R.3    Schlegel, V.L.4    Walter, J.5
  • 63
    • 84872969494 scopus 로고    scopus 로고
    • Gut microbiome composition is linked to whole grain-induced immunological improvements
    • Martinez I, Lattimer JM, Hubach KL, Case JA, Yang JY, et al. 2013. Gut microbiome composition is linked to whole grain-induced immunological improvements. ISME J. 7:269-80
    • (2013) ISME J. , vol.7 , pp. 269-280
    • Martinez, I.1    Lattimer, J.M.2    Hubach, K.L.3    Case, J.A.4    Yang, J.Y.5
  • 64
    • 84883154681 scopus 로고    scopus 로고
    • Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome
    • McNulty NP, Wu M, Erickson AR, Pan CL, Erickson BK, et al. 2013. Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol. 11:e1001637
    • (2013) PLoS Biol. , vol.11 , pp. e1001637
    • McNulty, N.P.1    Wu, M.2    Erickson, A.R.3    Pan, C.L.4    Erickson, B.K.5
  • 65
    • 69949130305 scopus 로고    scopus 로고
    • Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1
    • MillerMEB, Antonopoulos DA, Rincon MT, BandM, Bari A, et al. 2009. Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. PLoS ONE 4:e6650
    • (2009) PLoS ONE , vol.4 , pp. e6650
    • Meb, M.1    Antonopoulos, D.A.2    Rincon, M.T.3    Band, M.4    Bari, A.5
  • 66
    • 77954461699 scopus 로고    scopus 로고
    • Dietary fibre degradation and fermentation by two xylanolytic bacteria Bacteroides xylanisolvens XB1AT and Roseburia intestinalis XB6B4 from the human intestine
    • Mirande C, Kadlecikova E, Matulova M, Capek P, Bernalier-Donadille A, et al. 2010. Dietary fibre degradation and fermentation by two xylanolytic bacteria Bacteroides xylanisolvens XB1AT and Roseburia intestinalis XB6B4 from the human intestine. J. Appl. Microbiol. 109:451-60
    • (2010) J. Appl. Microbiol. , vol.109 , pp. 451-460
    • Mirande, C.1    Kadlecikova, E.2    Matulova, M.3    Capek, P.4    Bernalier-Donadille, A.5
  • 67
    • 77955557236 scopus 로고    scopus 로고
    • Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A
    • Mirande C, Mosoni P, Bera-Maillet C, Bernalier-Donadille A, Forano E. 2010. Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A. Appl. Microbiol. Biol. 87:2097-105
    • (2010) Appl. Microbiol. Biol. , vol.87 , pp. 2097-2105
    • Mirande, C.1    Mosoni, P.2    Bera-Maillet, C.3    Bernalier-Donadille, A.4    Forano, E.5
  • 68
    • 0031437202 scopus 로고    scopus 로고
    • Degradation and utilization of xylans by the rumen anaerobe Prevotella bryantii (formerly P ruminicola subsp brevis) β14
    • Miyazaki K,Martin JC, Marinsek-Logar R, Flint HJ. 1997. Degradation and utilization of xylans by the rumen anaerobe Prevotella bryantii (formerly P. ruminicola subsp brevis) β14. Anaerobe 3:373-81
    • (1997) Anaerobe , vol.3 , pp. 373-381
    • Miyazaki, K.1    Martin, J.C.2    Marinsek-Logar, R.3    Flint, H.J.4
  • 69
    • 0037378562 scopus 로고    scopus 로고
    • Involvement of the multidomain regulatory protein XynR in positive control of xylanase gene expression in the ruminal anaerobe Prevotella bryantii B14
    • MiyazakiK,MiyamotoH,MercerDK, Hirase T, Martin JC, et al. 2003. Involvement of the multidomain regulatory protein XynR in positive control of xylanase gene expression in the ruminal anaerobe Prevotella bryantii B14. J. Bacteriol. 185:2219-26
    • (2003) J. Bacteriol. , vol.185 , pp. 2219-2226
    • Miyazaki, K.1    Miyamoto, H.2    Mercer, D.K.3    Hirase, T.4    Martin, J.C.5
  • 70
    • 43849099222 scopus 로고    scopus 로고
    • Pectin structure and biosynthesis
    • Mohnen D. 2008. Pectin structure and biosynthesis. Curr. Opin. Plant Biol. 11:266-77
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 266-277
    • Mohnen, D.1
  • 72
    • 0034132054 scopus 로고    scopus 로고
    • Characterization of the cellulolytic complex (cellulosome) from Ruminococcus albus
    • Ohara H, Karita S, Kimura T, Sakka K, Ohmiya K. 2000. Characterization of the cellulolytic complex (cellulosome) from Ruminococcus albus. Biosci. Biotech. Biochem. 64:254-60
    • (2000) Biosci. Biotech. Biochem. , vol.64 , pp. 254-260
    • Ohara, H.1    Karita, S.2    Kimura, T.3    Sakka, K.4    Ohmiya, K.5
  • 73
    • 0002226639 scopus 로고
    • The role of ciliate protozoa and fungi in the rumen digestion of plant cell walls
    • Orpin CG. 1983. The role of ciliate protozoa and fungi in the rumen digestion of plant cell walls. Anim. Feed Sci. Technol. 10:121-43
    • (1983) Anim. Feed Sci. Technol. , vol.10 , pp. 121-143
    • Orpin, C.G.1
  • 74
    • 0002203112 scopus 로고
    • Comparison of foregut and hindgut fermentation in herbivores
    • ed. GG Montgomery Washington, DC: Smithson. Inst
    • Parra R. 1978. Comparison of foregut and hindgut fermentation in herbivores. In The Ecology of Arboreal Folivores, ed. GG Montgomery, pp. 205-29. Washington, DC: Smithson. Inst.
    • (1978) The Ecology of Arboreal Folivores , pp. 205-229
    • Parra, R.1
  • 75
    • 78149466996 scopus 로고    scopus 로고
    • Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: Insights into their environmental niche
    • Purushe J, Fouts DE, Morrison M,White BA, Mackie RI, et al. 2010. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb. Ecol. 60:721-29
    • (2010) Microb. Ecol. , vol.60 , pp. 721-729
    • Purushe, J.1    Fouts, D.E.2    Morrison, M.3    White, B.A.4    Mackie, R.I.5
  • 76
    • 40449132569 scopus 로고    scopus 로고
    • Cel9D, an atypical 1,4-β-D-glucan glucohydrolase from Fibrobacter succinogenes: Characteristics, catalytic residues, and synergistic interactions with other cellulases
    • Qi M, Jun HS, Forsberg CW. 2008. Cel9D, an atypical 1,4-β-D-glucan glucohydrolase from Fibrobacter succinogenes: characteristics, catalytic residues, and synergistic interactions with other cellulases. J. Bacteriol. 190:1976-84
    • (2008) J. Bacteriol. , vol.190 , pp. 1976-1984
    • Qi, M.1    Jun, H.S.2    Forsberg, C.W.3
  • 77
    • 79957841562 scopus 로고    scopus 로고
    • Snapshot of the eukaryotic gene expression in muskoxen rumen - A metatranscriptomic approach
    • Qi M, Wang P, OToole N, Barboza PS, Ungerfeld E, et al. 2011. Snapshot of the eukaryotic gene expression in muskoxen rumen-a metatranscriptomic approach. PLoS One 6:e20521
    • (2011) PLoS One , vol.6 , pp. e20521
    • Qi, M.1    Wang, P.2    Otoole, N.3    Barboza, P.S.4    Ungerfeld, E.5
  • 78
    • 17644400112 scopus 로고    scopus 로고
    • The Ruminococcus albus pilA1-pilA2 locus: Expression and putative role of two adjacent pil genes in pilus formation and bacterial adhesion to cellulose
    • Rakotoarivonina H, Larson MA, Morrison M, Girardeau JP, Gaillard-Martinie B, et al. 2005. The Ruminococcus albus pilA1-pilA2 locus: expression and putative role of two adjacent pil genes in pilus formation and bacterial adhesion to cellulose. Microbiology 151:1291-99
    • (2005) Microbiology , vol.151 , pp. 1291-1299
    • Rakotoarivonina, H.1    Larson, M.A.2    Morrison, M.3    Girardeau, J.P.4    Gaillard-Martinie, B.5
  • 79
    • 33750939775 scopus 로고    scopus 로고
    • Cell-associated α-amylases of butyrateproducing Firmicute bacteria from the human colon
    • Ramsay AG, Scott KP, Martin JC, RinconMT, Flint HJ. 2006. Cell-associated α-amylases of butyrateproducing Firmicute bacteria from the human colon. Microbiology 152:3281-90
    • (2006) Microbiology , vol.152 , pp. 3281-3290
    • Ramsay, A.G.1    Scott, K.P.2    Martin, J.C.3    Rincon, M.T.4    Flint, H.J.5
  • 80
    • 0031015878 scopus 로고    scopus 로고
    • Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron
    • Reeves AR,Wang GR, Salyers AA. 1997. Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron. J. Bacteriol. 179:643-9
    • (1997) J. Bacteriol. , vol.179 , pp. 643-649
    • Reeves, A.R.1    Wang, G.R.2    Salyers, A.A.3
  • 81
    • 34347369555 scopus 로고    scopus 로고
    • A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens
    • Rincon MT, Cepeljnik T, Martin JC, Barak Y, Lamed R, et al. 2007. A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens. J. Bacteriol. 189:4774-83
    • (2007) J. Bacteriol. , vol.189 , pp. 4774-4783
    • Rincon, M.T.1    Cepeljnik, T.2    Martin, J.C.3    Barak, Y.4    Lamed, R.5
  • 82
    • 27744600973 scopus 로고    scopus 로고
    • Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface
    • Rincon MT,CepeljnikT,Martin JC, LamedR, Barak Y, et al. 2005. Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface. J. Bacteriol. 187:7569-78
    • (2005) J. Bacteriol. , vol.187 , pp. 7569-7578
    • Rincon, M.T.1    Cepeljnik, T.2    Martin, J.C.3    Lamed, R.4    Barak, Y.5
  • 83
    • 77957935787 scopus 로고    scopus 로고
    • Abundance and diversity of dockerincontaining proteins in the fiber-degrading rumen bacterium Ruminococcus flavefaciens FD-1
    • Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, et al. 2010. Abundance and diversity of dockerincontaining proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. PLoS ONE 5:e12476
    • (2010) PLoS ONE , vol.5 , pp. e12476
    • Rincon, M.T.1    Dassa, B.2    Flint, H.J.3    Travis, A.J.4    Jindou, S.5
  • 84
    • 1942539976 scopus 로고    scopus 로고
    • ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome
    • Rincon MT, Martin JC, Aurilia V, McCrae SI, Rucklidge GJ, et al. 2004. ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome. J. Bacteriol. 186:2576-85
    • (2004) J. Bacteriol. , vol.186 , pp. 2576-2585
    • Rincon, M.T.1    Martin, J.C.2    Aurilia, V.3    McCrae, S.I.4    Rucklidge, G.J.5
  • 85
    • 0035487187 scopus 로고    scopus 로고
    • EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R flavefaciens protein via a dockerin domain
    • Rincon MT, McCrae SI, Kirby J, Scott KP, Flint HJ. 2001. EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R. flavefaciens protein via a dockerin domain. Appl. Environ. Microbiol. 67:4426-31
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4426-4431
    • Rincon, M.T.1    McCrae, S.I.2    Kirby, J.3    Scott, K.P.4    Flint, H.J.5
  • 86
    • 0142123359 scopus 로고    scopus 로고
    • The cellulolytic microflora of the human colon: Evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects
    • Robert C, Bernalier-Donadille A. 2003. The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects.FEMSMicrobiol. Ecol. 46:81-89
    • (2003) FEMS Microbiol Ecol. , vol.46 , pp. 81-89
    • Robert, C.1    Bernalier-Donadille, A.2
  • 87
    • 34547421701 scopus 로고    scopus 로고
    • Bacteroides cellulosilyticus sp nov, a cellulolytic bacterium from the human gut microbial community
    • Robert C, Chassard C, Lawson PA, Bernalier-Donadille A. 2007. Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community. Int. J. Syst. Evol. Microbiol. 57:1516-20
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1516-1520
    • Robert, C.1    Chassard, C.2    Lawson, P.A.3    Bernalier-Donadille, A.4
  • 89
    • 33747360729 scopus 로고    scopus 로고
    • Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains
    • Ryan SM, Fitzgerald GF, van Sinderen D. 2006. Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl. Environ. Microbiol. 72:5289-96
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5289-5296
    • Ryan, S.M.1    Fitzgerald, G.F.2    Van Sinderen, D.3
  • 91
    • 0034840478 scopus 로고    scopus 로고
    • The cellulosome and cellulose degradation by anaerobic bacteria
    • Schwarz WH. 2001. The cellulosome and cellulose degradation by anaerobic bacteria. Appl. Microbiol. Biotechnol. 56:634-49
    • (2001) Appl. Microbiol. Biotechnol. , vol.56 , pp. 634-649
    • Schwarz, W.H.1
  • 92
    • 79952765513 scopus 로고    scopus 로고
    • Substrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starch
    • Scott KP, Martin JC, Chassard C, Clerget M, Potrykus J, et al. 2011. Substrate-driven gene expression in Roseburia inulinivorans: importance of inducible enzymes in the utilization of inulin and starch. Proc. Natl. Acad. Sci. USA 108:4672-79
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4672-4679
    • Scott, K.P.1    Martin, J.C.2    Chassard, C.3    Clerget, M.4    Potrykus, J.5
  • 93
    • 84891485214 scopus 로고    scopus 로고
    • Prebiotic stimulation of human colonic butyrateproducing bacteria and bifidobacteria, in vitro
    • Scott KP, Martin JC, Duncan SH, Flint HJ. 2013. Prebiotic stimulation of human colonic butyrateproducing bacteria and bifidobacteria, in vitro. FEMS Microbiol. Ecol. 87:30-40
    • (2013) FEMS Microbiol. Ecol. , vol.87 , pp. 30-40
    • Scott, K.P.1    Martin, J.C.2    Duncan, S.H.3    Flint, H.J.4
  • 94
    • 0345148490 scopus 로고    scopus 로고
    • Physiological characterization of SusG, an outer membrane protein essential for starch utilization by Bacteroides thetaiotaomicron
    • Shipman JA, Cho KH, Siegel HA, Salyers AA. 1999. Physiological characterization of SusG, an outer membrane protein essential for starch utilization by Bacteroides thetaiotaomicron. J. Bacteriol. 181:7206-11
    • (1999) J. Bacteriol. , vol.181 , pp. 7206-7211
    • Shipman, J.A.1    Cho, K.H.2    Siegel, H.A.3    Salyers, A.A.4
  • 95
    • 0019433939 scopus 로고
    • Neutral detergent fiber, hemicellulose and cellulose digestibility in human subjects
    • Slavin JL, Brauer PM, Marlett JA. 1981. Neutral detergent fiber, hemicellulose and cellulose digestibility in human subjects. J. Nutr. 111:287-97
    • (1981) J. Nutr. , vol.111 , pp. 287-297
    • Slavin, J.L.1    Brauer, P.M.2    Marlett, J.A.3
  • 97
    • 15544376418 scopus 로고    scopus 로고
    • Glycan foraging in vivo by an intestine-adapted bacterial symbiont
    • Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, et al. 2005. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307:1955-59
    • (2005) Science , vol.307 , pp. 1955-1959
    • Sonnenburg, J.L.1    Xu, J.2    Leip, D.D.3    Chen, C.H.4    Westover, B.P.5
  • 98
    • 80053595108 scopus 로고    scopus 로고
    • Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7
    • Suen G, Stevenson DM, Bruce DC, Chertkov O, Copeland A, et al. 2011. Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7. J. Bacteriol. 193:5574-75
    • (2011) J. Bacteriol. , vol.193 , pp. 5574-5575
    • Suen, G.1    Stevenson, D.M.2    Bruce, D.C.3    Chertkov, O.4    Copeland, A.5
  • 99
    • 79955446915 scopus 로고    scopus 로고
    • The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist
    • Suen G, Weimer PJ, StevensonDM, Aylward FO, Boyum J, et al. 2011. The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PLoS ONE 6:e18814
    • (2011) PLoS ONE , vol.6 , pp. e18814
    • Suen, G.1    Weimer, P.J.2    Stevenson, D.M.3    Aylward, F.O.4    Boyum, J.5
  • 100
    • 0025198865 scopus 로고
    • Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets
    • Van Gylswyk NO. 1990. Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets. FEMS Microbiol. Lett. 73:243-53
    • (1990) FEMS Microbiol. Lett. , vol.73 , pp. 243-253
    • Van Gylswyk, N.O.1
  • 102
    • 0022814636 scopus 로고
    • The role of ciliate protozoa in nutrition of the ruminant
    • Veira DM. 1986. The role of ciliate protozoa in nutrition of the ruminant. J. Anim. Sci. 63:1547-60
    • (1986) J. Anim. Sci. , vol.63 , pp. 1547-1560
    • Veira, D.M.1
  • 103
    • 84878631904 scopus 로고    scopus 로고
    • Expression of cellulosome components and type IV pili within the extracellular proteome of Ruminococcus flavefaciens 007
    • Vodovnik M, Duncan SH, Reid MD, Cantlay L, Turner K, et al. 2013. Expression of cellulosome components and type IV pili within the extracellular proteome of Ruminococcus flavefaciens 007. PLoS ONE 8:e65333
    • (2013) PLoS ONE , vol.8 , pp. e65333
    • Vodovnik, M.1    Duncan, S.H.2    Reid, M.D.3    Cantlay, L.4    Turner, K.5
  • 104
    • 49749121708 scopus 로고    scopus 로고
    • The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities
    • Walker AW,Duncan SH,HarmsenHJ, HoltropG,WellingGW, FlintHJ. 2008. The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities. Environ. Microbiol. 10:3275-83
    • (2008) Environ. Microbiol. , vol.10 , pp. 3275-3283
    • Walker, A.W.1    Duncan, S.H.2    Harmsen, H.J.3    Holtrop, G.4    Welling, G.W.5    Flint, H.J.6
  • 105
    • 78751580602 scopus 로고    scopus 로고
    • Dominant and diet-responsive groups of bacteria within the human colonic microbiota
    • Walker AW, Ince J, Duncan SH, Webster LM, Holtrop G, et al. 2011. Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J. 5:220-30
    • (2011) ISME J. , vol.5 , pp. 220-230
    • Walker, A.W.1    Ince, J.2    Duncan, S.H.3    Webster, L.M.4    Holtrop, G.5
  • 106
    • 0026669748 scopus 로고
    • Genetic analysis of a locus on the Bacteroides ovatus chromosome which contains xylan utilization genes
    • Weaver J, Whitehead TR, Cotta MA, Valentine PC, Salyers AA. 1992. Genetic analysis of a locus on the Bacteroides ovatus chromosome which contains xylan utilization genes. Appl. Environ. Microbiol. 58:2764-70
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2764-2770
    • Weaver, J.1    Whitehead, T.R.2    Cotta, M.A.3    Valentine, P.C.4    Salyers, A.A.5
  • 107
    • 84906943565 scopus 로고    scopus 로고
    • Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota (Ruminococcus bicirculans) reveals two chromosomes and a selective capacity to utilize plant glucans
    • In press
    • Wegmann U, Louis P, Goesmann A, Henrissat B, Duncan SH, Flint HJ. 2013. Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota (Ruminococcus bicirculans) reveals two chromosomes and a selective capacity to utilize plant glucans. Environ. Microbiol. In press. doi: 10.1111/1462-2920.12217
    • (2013) Environ. Microbiol.
    • Wegmann, U.1    Louis, P.2    Goesmann, A.3    Henrissat, B.4    Duncan, S.H.5    Flint, H.J.6
  • 108
    • 0022684738 scopus 로고
    • Rumen holotrich ciliate protozoa
    • Williams AG. 1986. Rumen holotrich ciliate protozoa. Microbiol. Rev. 50:25-49
    • (1986) Microbiol. Rev. , vol.50 , pp. 25-49
    • Williams, A.G.1
  • 110
    • 63849263034 scopus 로고    scopus 로고
    • How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis
    • Woese CR, Goldenfeld N. 2009. How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis. Microbiol. Mol. Biol. Rev. 73:14-21
    • (2009) Microbiol. Mol. Biol. Rev. , vol.73 , pp. 14-21
    • Woese, C.R.1    Goldenfeld, N.2
  • 111
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, et al. 2011. Linking long-term dietary patterns with gut microbial enterotypes. Science 334:105-8
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y.Y.5
  • 112
    • 85012846263 scopus 로고    scopus 로고
    • Multifunctional enzyme systems for plant cell wall degradation
    • ed. M Moo-Young, M Butler, C Webb, A Moreira, F Bai Amsterdam: Elsevier
    • Xu Q, Luo Y, Ding S-Y, Lamed R, Bayer EA, Himmel ME. 2011. Multifunctional enzyme systems for plant cell wall degradation. In Comprehensive Biotechnology, ed. M Moo-Young, M Butler, C Webb, A Moreira, F Bai, pp. 15-25. Amsterdam: Elsevier
    • (2011) Comprehensive Biotechnology , pp. 15-25
    • Xu, Q.1    Luo, Y.2    Ding, S.-Y.3    Lamed, R.4    Bayer, E.A.5    Himmel, M.E.6
  • 113
    • 2442419093 scopus 로고    scopus 로고
    • A novel family of carbohydratebinding modules identified with Ruminococcus albus proteins
    • Xu Q, MorrisonM, Nelson KE, Bayer EA, Atamna N, Lamed R. 2004. A novel family of carbohydratebinding modules identified with Ruminococcus albus proteins. FEBS Lett. 566:11-16
    • (2004) FEBS Lett. , vol.566 , pp. 11-16
    • Xu, Q.1    Morrison, M.2    Nelson, K.E.3    Bayer, E.A.4    Atamna, N.5    Lamed, R.6
  • 114
    • 73649087249 scopus 로고    scopus 로고
    • Biochemical and domain analyses of FSUAxe6B, a modular acetyl xylan esterase, identify a unique carbohydrate binding module in Fibrobacter succinogenes S85
    • Yoshida S,Mackie RI, Cann IK. 2010. Biochemical and domain analyses of FSUAxe6B, a modular acetyl xylan esterase, identify a unique carbohydrate binding module in Fibrobacter succinogenes S85. J. Bacteriol. 192:483-93
    • (2010) J. Bacteriol. , vol.192 , pp. 483-493
    • Yoshida, S.1    Mackie, R.I.2    Cann, I.K.3
  • 116
    • 84863990011 scopus 로고    scopus 로고
    • Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
    • Ze X, Duncan SH, Louis P, Flint HJ. 2012. Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon. ISME J. 6:1535-43
    • (2012) ISME J. , vol.6 , pp. 1535-1543
    • Ze, X.1    Duncan, S.H.2    Louis, P.3    Flint, H.J.4
  • 117
    • 84877356167 scopus 로고    scopus 로고
    • Some are more equal than others: The role of "keystone" species in the degradation of recalcitrant substrates
    • Ze X, Le Mougen F, Duncan SH, Louis P, Flint HJ. 2013. Some are more equal than others: the role of "keystone" species in the degradation of recalcitrant substrates. Gut Microbes 4:236-40
    • (2013) Gut Microbes , vol.4 , pp. 236-240
    • Ze, X.1    Le Mougen, F.2    Duncan, S.H.3    Louis, P.4    Flint, H.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.