메뉴 건너뛰기




Volumn 4, Issue 8, 2015, Pages

Identification of characteristic TRB V usage in HBV-associated HCC by using differential expression profiling analysis

Author keywords

hepatocellular carcinoma; high throughput sequencing; highly expanded clone; T cell; TCR

Indexed keywords

CELL ANTIGEN; RNA 18S; RNA 28S; T LYMPHOCYTE RECEPTOR; T LYMPHOCYTE RECEPTOR ALPHA CHAIN; T LYMPHOCYTE RECEPTOR BETA CHAIN; TUMOR MARKER;

EID: 84940564756     PISSN: 21624011     EISSN: 2162402X     Source Type: Journal    
DOI: 10.1080/2162402X.2015.1021537     Document Type: Article
Times cited : (37)

References (44)
  • 1
    • 0003527862 scopus 로고    scopus 로고
    • pp. Chapter 1.1
    • World Cancer Report 2014. World Health Organization. 2014. pp. Chapter 1.1. ISBN 9283204298
    • (2014) World Health Organization
  • 2
    • 58649107384 scopus 로고    scopus 로고
    • Malignant tumours of the liver
    • A.Irfan, N.L.Dileep. Malignant tumours of the liver. Surgery (Oxford) 2009; 27(1):30-7; http://dx.doi.org/10.1016/j.mpsur.2008.12.005
    • (2009) Surgery (Oxford) , vol.27 , Issue.1 , pp. 30-37
    • Irfan, A.1    Dileep, N.L.2
  • 4
    • 34250020201 scopus 로고    scopus 로고
    • Hepatocellular carcinoma: epidemiology and molecular carcinogenesis
    • 17570226
    • H.B.El-Serag, K.L.Rudolph. Hepatocellular carcinoma: epidemiology and molecular carcinogenesis. Gastroenterology 2007; 132(7):2557-76; PMID:17570226; http://dx.doi.org/10.1053/j.gastro.2007.04.061
    • (2007) Gastroenterology , vol.132 , Issue.7 , pp. 2557-2576
    • El-Serag, H.B.1    Rudolph, K.L.2
  • 5
    • 84873020277 scopus 로고    scopus 로고
    • Pathogenic mechanisms in HBV- and HCV-associated hepatocellular carcinoma
    • 23344543
    • A.Arzumanyan, H.M.Reis, M.A.Feitelson. Pathogenic mechanisms in HBV- and HCV-associated hepatocellular carcinoma. Nat Rev Cancer 2013; 13(2):123-35; PMID:23344543; http://dx.doi.org/10.1038/nrc3449
    • (2013) Nat Rev Cancer , vol.13 , Issue.2 , pp. 123-135
    • Arzumanyan, A.1    Reis, H.M.2    Feitelson, M.A.3
  • 6
    • 79959478969 scopus 로고    scopus 로고
    • Clinical practice. Chronic hepatitis C infection
    • 21696309
    • H.R.Rosen. Clinical practice. Chronic hepatitis C infection. N Engl J Med 2011; 364(25):2429-38; PMID:21696309; http://dx.doi.org/10.1056/NEJMcp1006613
    • (2011) N Engl J Med , vol.364 , Issue.25 , pp. 2429-2438
    • Rosen, H.R.1
  • 7
    • 84857088298 scopus 로고    scopus 로고
    • From liver cirrhosis to HCC
    • L.Bolondi, L.Gramantieri. From liver cirrhosis to HCC. Intern Emerg Med 2011; Suppl 1:93-8; PMID:22009618; http://dx.doi.org/10.1007/s11739-011-0682-8
    • (2011) Intern Emerg Med , pp. 93-98
    • Bolondi, L.1    Gramantieri, L.2
  • 8
    • 77955462853 scopus 로고    scopus 로고
    • Global patterns of cancer incidence and mortality rates and trends
    • A.Jemal, M.M.Center, C.DeSantis, E.M.Ward. Global patterns of cancer incidence and mortality rates and trends. Canc Epidemiol Biomarkers Prev 2010; 19(8):1893-907; PMID:20647400; http://dx.doi.org/10.1158/1055-9965.EPI-10-0437
    • (2010) Canc Epidemiol Biomarkers Prev , vol.19 , Issue.8 , pp. 1893-1907
    • Jemal, A.1    Center, M.M.2    DeSantis, C.3    Ward, E.M.4
  • 10
    • 84887179037 scopus 로고    scopus 로고
    • Sequence analysis of T-cell repertoires in health and disease
    • 24172704
    • D.J.Woodsworth, M.Castellarin, R.A.Holt. Sequence analysis of T-cell repertoires in health and disease. Genome Med 2013; 5(10):98; PMID:24172704; http://dx.doi.org/10.1186/gm502
    • (2013) Genome Med , vol.5 , Issue.10 , pp. 98
    • Woodsworth, D.J.1    Castellarin, M.2    Holt, R.A.3
  • 11
    • 0023720148 scopus 로고
    • T-cell antigen receptor genes and T-cell recognition
    • 3043226
    • M.M.Davis, P.J.Bjorkman. T-cell antigen receptor genes and T-cell recognition. Nature 1988; 334(6181):395-402; PMID:3043226; http://dx.doi.org/10.1038/334395a0
    • (1988) Nature , vol.334 , Issue.6181 , pp. 395-402
    • Davis, M.M.1    Bjorkman, P.J.2
  • 12
    • 66049132446 scopus 로고    scopus 로고
    • Many different Vbeta CDR3s can reveal the inherent MHC reactivity of germline-encoded TCR V regions
    • 19416894
    • K.Rubtsova, J.P.Scott-Browne, F.Crawford, S.Dai, P.Marrack, J.W.Kappler. Many different Vbeta CDR3s can reveal the inherent MHC reactivity of germline-encoded TCR V regions. Proc Natl Acad Sci U S A 2009; 106(19):7951-6; PMID:19416894; http://dx.doi.org/10.1073/pnas.0902728106
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.19 , pp. 7951-7956
    • Rubtsova, K.1    Scott-Browne, J.P.2    Crawford, F.3    Dai, S.4    Marrack, P.5    Kappler, J.W.6
  • 15
    • 84887511784 scopus 로고    scopus 로고
    • Ultra-deep T-cell receptor sequencing reveals the complexity and intratumour heterogeneity of T-cell clones in renal cell carcinomas
    • 24122851
    • M.Gerlinger, S.A.Quezada, K.S.Peggs, A.J.Furness, R.Fisher, T.Marafioti, V.H.Shende, N.McGranahan, A.J.Rowan, S.Hazell et al. Ultra-deep T-cell receptor sequencing reveals the complexity and intratumour heterogeneity of T-cell clones in renal cell carcinomas. J Pathol 2013; 231(4):424-32; PMID:24122851; http://dx.doi.org/10.1002/path.4284
    • (2013) J Pathol , vol.231 , Issue.4 , pp. 424-432
    • Gerlinger, M.1    Quezada, S.A.2    Peggs, K.S.3    Furness, A.J.4    Fisher, R.5    Marafioti, T.6    Shende, V.H.7    McGranahan, N.8    Rowan, A.J.9    Hazell, S.10
  • 16
    • 84891685285 scopus 로고    scopus 로고
    • Minimal residual disease monitoring with high-throughput sequencing of T cell receptors in cutaneous T cell lymphoma
    • 24307695
    • W.K.Weng, R.Armstrong, S.Arai, C.Desmarais, R.Hoppe, Y.H.Kim. Minimal residual disease monitoring with high-throughput sequencing of T cell receptors in cutaneous T cell lymphoma. Sci Transl Med 2013; 5(214):214ra171; PMID:24307695; http://dx.doi.org/10.1126/scitranslmed.3007420
    • (2013) Sci Transl Med , vol.5 , Issue.214 , pp. 171
    • Weng, W.K.1    Armstrong, R.2    Arai, S.3    Desmarais, C.4    Hoppe, R.5    Kim, Y.H.6
  • 17
    • 84869401941 scopus 로고    scopus 로고
    • COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
    • 23044551
    • B.Liu, J.Yuan, S.M.Yiu, Z.Li, Y.Xie, Y.Chen, Y.Shi, H.Zhang, Y.Li, T.W.Lam et al. COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinformatics 2012; 28(22):2870-4; PMID:23044551; http://dx.doi.org/10.1093/bioinformatics/bts563
    • (2012) Bioinformatics , vol.28 , Issue.22 , pp. 2870-2874
    • Liu, B.1    Yuan, J.2    Yiu, S.M.3    Li, Z.4    Xie, Y.5    Chen, Y.6    Shi, Y.7    Zhang, H.8    Li, Y.9    Lam, T.W.10
  • 18
    • 0028220953 scopus 로고
    • Circulating T cell repertoire complexity in normal individuals and bone marrow recipients analyzed by CDR3 size spectratyping. Correlation with immune status
    • [corrected to Kissela B], 8176227
    • J.Gorski, M.Yassai, X.Zhu, B.Kissela, B.Kissella, [corrected to Kissela B], C.Keever, N.Flomenberg. Circulating T cell repertoire complexity in normal individuals and bone marrow recipients analyzed by CDR3 size spectratyping. Correlation with immune status. J Immunol 1994; 152(10):5109-19; PMID:8176227
    • (1994) J Immunol , vol.152 , Issue.10 , pp. 5109-5119
    • Gorski, J.1    Yassai, M.2    Zhu, X.3    Kissela, B.4    Kissella, B.5    Keever, C.6    Flomenberg, N.7
  • 19
    • 0027251463 scopus 로고
    • The sizes of the CDR3 hypervariable regions of the murine T-cell receptor beta chains vary as a function of the recombined germ-line segments
    • 8483950
    • C.Pannetier, M.Cochet, S.Darche, A.Casrouge, M.Zoller, P.Kourilsky. The sizes of the CDR3 hypervariable regions of the murine T-cell receptor beta chains vary as a function of the recombined germ-line segments. Proc Natl Acad Sci U S A 1993; 90(9):4319-23; PMID:8483950; http://dx.doi.org/10.1073/pnas.90.9.4319
    • (1993) Proc Natl Acad Sci U S A , vol.90 , Issue.9 , pp. 4319-4323
    • Pannetier, C.1    Cochet, M.2    Darche, S.3    Casrouge, A.4    Zoller, M.5    Kourilsky, P.6
  • 21
    • 77952734936 scopus 로고    scopus 로고
    • High-throughput DNA sequencing-concepts and limitations
    • 20486139
    • M.Kircher, J.Kelso. High-throughput DNA sequencing-concepts and limitations. BioEssays 2010; 32(6):524-36; PMID:20486139; http://dx.doi.org/10.1002/bies.200900181
    • (2010) BioEssays , vol.32 , Issue.6 , pp. 524-536
    • Kircher, M.1    Kelso, J.2
  • 23
    • 73949116413 scopus 로고    scopus 로고
    • Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire
    • 19875695
    • J.Glanville, W.Zhai, J.Berka, D.Telman, G.Huerta, G.R.Mehta, I.Ni, L.Mei, P.D.Sundar, G.M.Day et al. Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc Natl Acad Sci U S A 2009; 106(48):20216-21; PMID:19875695; http://dx.doi.org/10.1073/pnas.0909775106
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.48 , pp. 20216-20221
    • Glanville, J.1    Zhai, W.2    Berka, J.3    Telman, D.4    Huerta, G.5    Mehta, G.R.6    Ni, I.7    Mei, L.8    Sundar, P.D.9    Day, G.M.10
  • 24
    • 79955554975 scopus 로고    scopus 로고
    • Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
    • 21349924
    • R.L.Warren, J.D.Freeman, T.Zeng, G.Choe, S.Munro, R.Moore, J.R.Webb, R.A.Holt. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res 2011; 21(5):790-7; PMID:21349924; http://dx.doi.org/10.1101/gr.115428.110
    • (2011) Genome Res , vol.21 , Issue.5 , pp. 790-797
    • Warren, R.L.1    Freeman, J.D.2    Zeng, T.3    Choe, G.4    Munro, S.5    Moore, R.6    Webb, J.R.7    Holt, R.A.8
  • 26
    • 84905040017 scopus 로고    scopus 로고
    • Immunosignature system for diagnosis of cancer
    • 25024171
    • P.Stafford, Z.Cichacz, N.W.Woodbury, S.A.Johnston. Immunosignature system for diagnosis of cancer. Proc Natl Acad Sci U S A 2014; 111(30):E3072-80; PMID:25024171; http://dx.doi.org/10.1073/pnas.1409432111
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.30 , pp. 3072-3080
    • Stafford, P.1    Cichacz, Z.2    Woodbury, N.W.3    Johnston, S.A.4
  • 27
    • 0037625160 scopus 로고    scopus 로고
    • Gene segment selection in V(D)J recombination: accessibility and beyond
    • 12830137
    • M.S.Krangel. Gene segment selection in V(D)J recombination: accessibility and beyond. Nat Immunol 2003; 4(7):624-30; PMID:12830137; http://dx.doi.org/10.1038/ni0703-624
    • (2003) Nat Immunol , vol.4 , Issue.7 , pp. 624-630
    • Krangel, M.S.1
  • 28
    • 79955554975 scopus 로고    scopus 로고
    • Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
    • 21349924
    • R.L.Warren, J.D.Freeman, T.Zeng, G.Choe, S.Munro, R.Moore, J.R.Webb, R.A.Holt. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res 2011; 21:790-97; PMID:21349924; http://dx.doi.org/10.1101/gr.115428.110
    • (2011) Genome Res , vol.21 , pp. 790-797
    • Warren, R.L.1    Freeman, J.D.2    Zeng, T.3    Choe, G.4    Munro, S.5    Moore, R.6    Webb, J.R.7    Holt, R.A.8
  • 31
    • 79955955068 scopus 로고    scopus 로고
    • Impact of age on T cell signaling: a general defect or specific alterations? Ageing Res
    • 20933612
    • A.Larbi, G.Pawelec, S.C.Wong, D.Goldeck, J.J.Tai, T.Fulop. Impact of age on T cell signaling: a general defect or specific alterations? Ageing Res. Rev 2011; 10(3):370-8; PMID:20933612; http://dx.doi.org/10.1016/j.arr.2010.09.08
    • (2011) Rev , vol.10 , Issue.3 , pp. 370-378
    • Larbi, A.1    Pawelec, G.2    Wong, S.C.3    Goldeck, D.4    Tai, J.J.5    Fulop, T.6
  • 32
    • 84870293512 scopus 로고    scopus 로고
    • Decline in miR-181a expression with age impairs T cell receptor sensitivity by increasing DUSP6 activity
    • 23023500
    • G.Li, M.Yu, W.W.Lee, M.Tsang, E.Krishnan, C.M.Weyand, J.J.Goronzy. Decline in miR-181a expression with age impairs T cell receptor sensitivity by increasing DUSP6 activity. Nat Med 2012; 18(10):1518-24; PMID:23023500; http://dx.doi.org/10.1038/nm.2963
    • (2012) Nat Med , vol.18 , Issue.10 , pp. 1518-1524
    • Li, G.1    Yu, M.2    Lee, W.W.3    Tsang, M.4    Krishnan, E.5    Weyand, C.M.6    Goronzy, J.J.7
  • 35
    • 84890140713 scopus 로고    scopus 로고
    • TCR repertoires of intratumoral T-cell subsets
    • 24329790
    • C.Linnemann, R.Mezzadra, T.N.Schumacher. TCR repertoires of intratumoral T-cell subsets. Immunol Rev 2014; 257(1):72-82; PMID:24329790; http://dx.doi.org/10.1111/imr.12140
    • (2014) Immunol Rev , vol.257 , Issue.1 , pp. 72-82
    • Linnemann, C.1    Mezzadra, R.2    Schumacher, T.N.3
  • 36
    • 78651053628 scopus 로고
    • Primary carcinoma of the liver: a study of 100 cases among 48 900 necropsies
    • 13160935
    • H.A.Edmondson, P.E.Steiner. Primary carcinoma of the liver: a study of 100 cases among 48 900 necropsies. Cancer 1954; 7(3):462-503; PMID:13160935; http://dx.doi.org/10.1002/1097-0142(195405)7:3%3c462::AID-CNCR2820070308%3e3.0.CO;2-E
    • (1954) Cancer , vol.7 , Issue.3 , pp. 462-503
    • Edmondson, H.A.1    Steiner, P.E.2
  • 37
    • 84856021596 scopus 로고    scopus 로고
    • Prognostic significance of tumor-infiltrating T cells in ovarian cancer: Ameta-analysis
    • 22040834
    • W.T.Hwang, S.F.Adams, E.Tahirovic, I.S.Hagemann, G.Coukos. Prognostic significance of tumor-infiltrating T cells in ovarian cancer: Ameta-analysis. Gynecol Oncol 2012; 124(2):192198; PMID:22040834; http://dx.doi.org/10.1016/j.ygyno.2011.09.039
    • (2012) Gynecol Oncol , vol.124 , Issue.2 , pp. 192198
    • Hwang, W.T.1    Adams, S.F.2    Tahirovic, E.3    Hagemann, I.S.4    Coukos, G.5
  • 39
    • 84864059882 scopus 로고    scopus 로고
    • Tumor-infiltrating lymphocyte grade is an independent predictor of sentinel lymph node status and survival in patients with cutaneous melanoma
    • 22711850
    • F.Azimi, R.A.Scolyer, P.Rumcheva, M.Moncrieff, R.Murali, S.W.McCarthy, R.P.Saw, J.F.Thompson. Tumor-infiltrating lymphocyte grade is an independent predictor of sentinel lymph node status and survival in patients with cutaneous melanoma. J Clin Oncol 2012; 30(21):2678-83; PMID:22711850; http://dx.doi.org/10.1200/JCO.2011.37.8539
    • (2012) J Clin Oncol , vol.30 , Issue.21 , pp. 2678-2683
    • Azimi, F.1    Scolyer, R.A.2    Rumcheva, P.3    Moncrieff, M.4    Murali, R.5    McCarthy, S.W.6    Saw, R.P.7    Thompson, J.F.8
  • 40
    • 84874830056 scopus 로고    scopus 로고
    • Biomarkers for immunostimulatory monoclonal antibodies in combination strategies for melanoma and other tumor types
    • 23460532
    • P.A.Ascierto, M.Kalos, D.A.Schaer, M.K.Callahan, J.D.Wolchok. Biomarkers for immunostimulatory monoclonal antibodies in combination strategies for melanoma and other tumor types. Clin Cancer Res 2013; 19(5):1009-20; PMID:23460532; http://dx.doi.org/10.1158/1078-0432.CCR-12-2982
    • (2013) Clin Cancer Res , vol.19 , Issue.5 , pp. 1009-1020
    • Ascierto, P.A.1    Kalos, M.2    Schaer, D.A.3    Callahan, M.K.4    Wolchok, J.D.5
  • 41
    • 84872514398 scopus 로고    scopus 로고
    • BRAF inhibition increases tumor infiltration by T cells and enhances the antitumor activity of adoptive immunotherapy in mice
    • 23204132
    • C.Liu, W.Peng, C.Xu, Y.Lou, M.Zhang, J.A.Wargo, J.Q.Chen, H.S.Li, S.S.Watowich, Y.Yang et al. BRAF inhibition increases tumor infiltration by T cells and enhances the antitumor activity of adoptive immunotherapy in mice. Clin Cancer Res 2013; 19(2):393-403; PMID:23204132; http://dx.doi.org/10.1158/1078-0432.CCR-12-1626
    • (2013) Clin Cancer Res , vol.19 , Issue.2 , pp. 393-403
    • Liu, C.1    Peng, W.2    Xu, C.3    Lou, Y.4    Zhang, M.5    Wargo, J.A.6    Chen, J.Q.7    Li, H.S.8    Watowich, S.S.9    Yang, Y.10
  • 42
    • 79959745851 scopus 로고    scopus 로고
    • The prognostic influence of tumour‐infiltrating lymphocytes in cancer: a systematic review with meta‐analysis
    • 21629244
    • M.J.Gooden, G.H.de Bock, N.Leffers, T.Daemen, H.W.Nijman. The prognostic influence of tumour‐infiltrating lymphocytes in cancer: a systematic review with meta‐analysis. Br J Cancer 2011; 105(1):93-103; PMID:21629244; http://dx.doi.org/10.1038/bjc.2011.189
    • (2011) Br J Cancer , vol.105 , Issue.1 , pp. 93-103
    • Gooden, M.J.1    de Bock, G.H.2    Leffers, N.3    Daemen, T.4    Nijman, H.W.5
  • 43
    • 55549097849 scopus 로고    scopus 로고
    • The diploid genome sequence of an Asian individual
    • 18987735
    • J.Wang, W.Wang, R.Li, Y.Li, G.Tian, L.Goodman, W.Fan, J.Zhang, J.Li, Y.Guo et al. The diploid genome sequence of an Asian individual. Nature 2008; 456(7218):60-5; PMID:18987735; http://dx.doi.org/10.1038/nature07484
    • (2008) Nature , vol.456 , Issue.7218 , pp. 60-65
    • Wang, J.1    Wang, W.2    Li, R.3    Li, Y.4    Tian, G.5    Goodman, L.6    Fan, W.7    Zhang, J.8    Li, J.9    Guo, Y.10
  • 44
    • 79958026088 scopus 로고    scopus 로고
    • IMGT/junction analysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR)
    • 21632777
    • V.Giudicelli, M.P.Lefranc. IMGT/junction analysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR). Cold Spring Harb Protoc 2011; 2011(6):716-25; PMID:21632777; http://dx.doi.org/10.1101/pdb.prot5634
    • (2011) Cold Spring Harb Protoc , vol.2011 , Issue.6 , pp. 716-725
    • Giudicelli, V.1    Lefranc, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.