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Volumn 162, Issue 5, 2015, Pages 1039-1050

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

(21)  Waszak, Sebastian M a,b,f   Delaneau, Olivier b,c,d   Gschwind, Andreas R b,e   Kilpinen, Helena b,c,d   Raghav, Sunil K a   Witwicki, Robert M e   Orioli, Andrea e   Wiederkehr, Michael e   Panousis, Nikolaos I b,c,d   Yurovsky, Alisa b,c,d   Romano Palumbo, Luciana c   Planchon, Alexandra c   Bielser, Deborah c   Padioleau, Ismael b,c,d   Udin, Gilles a   Thurnheer, Sarah a   Hacker, David a   Hernandez, Nouria e   Reymond, Alexandre e   Deplancke, Bart a,b   more..


Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; RNA POLYMERASE II; TRANSCRIPTION FACTOR PU 1; CHROMATIN; TRANSCRIPTION FACTOR;

EID: 84940419146     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2015.08.001     Document Type: Article
Times cited : (173)

References (48)
  • 2
    • 84925089678 scopus 로고    scopus 로고
    • The role of regulatory variation in complex traits and disease
    • F.W. Albert, and L. Kruglyak The role of regulatory variation in complex traits and disease Nat. Rev. Genet. 16 2015 197 212
    • (2015) Nat. Rev. Genet. , vol.16 , pp. 197-212
    • Albert, F.W.1    Kruglyak, L.2
  • 3
    • 84876836223 scopus 로고    scopus 로고
    • Modification of enhancer chromatin: What, how, and why?
    • E. Calo, and J. Wysocka Modification of enhancer chromatin: what, how, and why? Mol. Cell 49 2013 825 837
    • (2013) Mol. Cell , vol.49 , pp. 825-837
    • Calo, E.1    Wysocka, J.2
  • 4
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
    • (2012) Nature , vol.489 , pp. 57-74
  • 5
    • 84897394513 scopus 로고    scopus 로고
    • The functional consequences of variation in transcription factor binding
    • D.A. Cusanovich, B. Pavlovic, J.K. Pritchard, and Y. Gilad The functional consequences of variation in transcription factor binding PLoS Genet. 10 2014 e1004226
    • (2014) PLoS Genet. , vol.10 , pp. e1004226
    • Cusanovich, D.A.1    Pavlovic, B.2    Pritchard, J.K.3    Gilad, Y.4
  • 6
    • 84886853624 scopus 로고    scopus 로고
    • Topology of mammalian developmental enhancers and their regulatory landscapes
    • W. de Laat, and D. Duboule Topology of mammalian developmental enhancers and their regulatory landscapes Nature 502 2013 499 506
    • (2013) Nature , vol.502 , pp. 499-506
    • De Laat, W.1    Duboule, D.2
  • 7
    • 0035986888 scopus 로고    scopus 로고
    • Evolution of transcription factor binding sites in Mammalian gene regulatory regions: Conservation and turnover
    • E.T. Dermitzakis, and A.G. Clark Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover Mol. Biol. Evol. 19 2002 1114 1121
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1114-1121
    • Dermitzakis, E.T.1    Clark, A.G.2
  • 8
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J.S. Liu, and B. Ren Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 2012 376 380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 10
    • 68949213578 scopus 로고    scopus 로고
    • Insights from genomic profiling of transcription factors
    • P.J. Farnham Insights from genomic profiling of transcription factors Nat. Rev. Genet. 10 2009 605 616
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 605-616
    • Farnham, P.J.1
  • 14
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • S. Heinz, C. Benner, N. Spann, E. Bertolino, Y.C. Lin, P. Laslo, J.X. Cheng, C. Murre, H. Singh, and C.K. Glass Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities Mol. Cell 38 2010 576 589
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 16
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • B.N. Howie, P. Donnelly, and J. Marchini A flexible and accurate genotype imputation method for the next generation of genome-wide association studies PLoS Genet. 5 2009 e1000529
    • (2009) PLoS Genet. , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 22
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 24
    • 77954407332 scopus 로고    scopus 로고
    • Genomewide association studies and assessment of the risk of disease
    • T.A. Manolio Genomewide association studies and assessment of the risk of disease N. Engl. J. Med. 363 2010 166 176
    • (2010) N. Engl. J. Med. , vol.363 , pp. 166-176
    • Manolio, T.A.1
  • 28
    • 77951439152 scopus 로고    scopus 로고
    • Trait-associated SNPs are more likely to be eQTLs: Annotation to enhance discovery from GWAS
    • D.L. Nicolae, E. Gamazon, W. Zhang, S. Duan, M.E. Dolan, and N.J. Cox Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS PLoS Genet. 6 2010 e1000888
    • (2010) PLoS Genet. , vol.6 , pp. e1000888
    • Nicolae, D.L.1    Gamazon, E.2    Zhang, W.3    Duan, S.4    Dolan, M.E.5    Cox, N.J.6
  • 29
    • 84899415536 scopus 로고    scopus 로고
    • CTCF: An architectural protein bridging genome topology and function
    • C.-T. Ong, and V.G. Corces CTCF: an architectural protein bridging genome topology and function Nat. Rev. Genet. 15 2014 234 246
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 234-246
    • Ong, C.-T.1    Corces, V.G.2
  • 33
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 2012 109 113
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 34
    • 83055168377 scopus 로고    scopus 로고
    • Relating CNVs to transcriptome data at fine resolution: Assessment of the effect of variant size, type, and overlap with functional regions
    • A. Schlattl, S. Anders, S.M. Waszak, W. Huber, and J.O. Korbel Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions Genome Res. 21 2011 2004 2013
    • (2011) Genome Res. , vol.21 , pp. 2004-2013
    • Schlattl, A.1    Anders, S.2    Waszak, S.M.3    Huber, W.4    Korbel, J.O.5
  • 35
    • 84898025687 scopus 로고    scopus 로고
    • Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin
    • D. Shlyueva, C. Stelzer, D. Gerlach, J.O. Yáñez-Cuna, M. Rath, L.M. Boryń, C.D. Arnold, and A. Stark Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin Mol. Cell 54 2014 180 192
    • (2014) Mol. Cell , vol.54 , pp. 180-192
    • Shlyueva, D.1    Stelzer, C.2    Gerlach, D.3    Yáñez-Cuna, J.O.4    Rath, M.5    Boryń, L.M.6    Arnold, C.D.7    Stark, A.8
  • 36
    • 84872398729 scopus 로고    scopus 로고
    • Transcription-associated histone modifications and cryptic transcription
    • M. Smolle, and J.L. Workman Transcription-associated histone modifications and cryptic transcription Biochim. Biophys. Acta 1829 2013 84 97
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 84-97
    • Smolle, M.1    Workman, J.L.2
  • 37
    • 84865249952 scopus 로고    scopus 로고
    • Transcription factors: From enhancer binding to developmental control
    • F. Spitz, and E.E.M. Furlong Transcription factors: from enhancer binding to developmental control Nat. Rev. Genet. 13 2012 613 626
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 613-626
    • Spitz, F.1    Furlong, E.E.M.2
  • 38
    • 84904052161 scopus 로고    scopus 로고
    • Spurious transcription factor binding: Non-functional or genetically redundant?
    • M. Spivakov Spurious transcription factor binding: non-functional or genetically redundant? BioEssays 36 2014 798 806
    • (2014) BioEssays , vol.36 , pp. 798-806
    • Spivakov, M.1
  • 40
    • 77955505742 scopus 로고    scopus 로고
    • A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies
    • O. Stegle, L. Parts, R. Durbin, and J. Winn A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies PLoS Comput. Biol. 6 2010 e1000770
    • (2010) PLoS Comput. Biol. , vol.6 , pp. e1000770
    • Stegle, O.1    Parts, L.2    Durbin, R.3    Winn, J.4
  • 41
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • J.D. Storey, and R. Tibshirani Statistical significance for genomewide studies Proc. Natl. Acad. Sci. USA 100 2003 9440 9445
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 42
  • 43
    • 84899453734 scopus 로고    scopus 로고
    • Evolution of transcription factor binding in metazoans - Mechanisms and functional implications
    • D. Villar, P. Flicek, and D.T. Odom Evolution of transcription factor binding in metazoans - mechanisms and functional implications Nat. Rev. Genet. 15 2014 221 233
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 221-233
    • Villar, D.1    Flicek, P.2    Odom, D.T.3
  • 46
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • G.A. Wray The evolutionary significance of cis-regulatory mutations Nat. Rev. Genet. 8 2007 206 216
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 47
    • 77951610155 scopus 로고    scopus 로고
    • Genetic analysis of variation in transcription factor binding in yeast
    • W. Zheng, H. Zhao, E. Mancera, L.M. Steinmetz, and M. Snyder Genetic analysis of variation in transcription factor binding in yeast Nature 464 2010 1187 1191
    • (2010) Nature , vol.464 , pp. 1187-1191
    • Zheng, W.1    Zhao, H.2    Mancera, E.3    Steinmetz, L.M.4    Snyder, M.5


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