-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and Mann, M. (2003). Mass spectrometry-based proteomics. Nature 422, 198-207. doi: 10.1038/nature01511.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
33845989449
-
Transgenic mouse proteomics identifies new 14-3-3-associated proteins involved in cytoskeletal rearrangements and cell signaling
-
Angrand, P. O., Segura, I., Volkel, P., Ghidelli, S., Terry, R., Brajenovic, M., et al. (2006). Transgenic mouse proteomics identifies new 14-3-3-associated proteins involved in cytoskeletal rearrangements and cell signaling. Mol. Cell. Proteomics 5, 2211-2227. doi: 10.1074/mcp.M600147-MCP200.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 2211-2227
-
-
Angrand, P.O.1
Segura, I.2
Volkel, P.3
Ghidelli, S.4
Terry, R.5
Brajenovic, M.6
-
3
-
-
84923360899
-
Proteins interacting with cloning scars: a source of false positive protein-protein interactions
-
Banks, C. A., Boanca, G., Lee, Z. T., Florens, L., and Washburn, M. P. (2015). Proteins interacting with cloning scars: a source of false positive protein-protein interactions. Sci. Rep. 5, 8530. doi: 10.1038/srep08530.
-
(2015)
Sci. Rep
, vol.5
, pp. 8530
-
-
Banks, C.A.1
Boanca, G.2
Lee, Z.T.3
Florens, L.4
Washburn, M.P.5
-
4
-
-
84865576726
-
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
-
Bantscheff, M., Lemeer, S., Savitski, M. M., and Kuster, B. (2012). Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present. Anal. Bioanal. Chem. 404, 939-965. doi: 10.1007/s00216-012-6203-4.
-
(2012)
Anal. Bioanal. Chem
, vol.404
, pp. 939-965
-
-
Bantscheff, M.1
Lemeer, S.2
Savitski, M.M.3
Kuster, B.4
-
5
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
Bartke, T., Vermeulen, M., Xhemalce, B., Robson, S. C., Mann, M., and Kouzarides, T. (2010). Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143, 470-484. doi: 10.1016/j.cell.2010.10.012.
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
Robson, S.C.4
Mann, M.5
Kouzarides, T.6
-
6
-
-
77954221299
-
GABAB receptor constituents revealed by tandem affinity purification from transgenic mice
-
Bartoi, T., Rigbolt, K. T., Du, D., Kohr, G., Blagoev, B., and Kornau, H. C. (2010). GABAB receptor constituents revealed by tandem affinity purification from transgenic mice. J. Biol. Chem. 285, 20625-20633. doi: 10.1074/jbc.M109.049700.
-
(2010)
J. Biol. Chem
, vol.285
, pp. 20625-20633
-
-
Bartoi, T.1
Rigbolt, K.T.2
Du, D.3
Kohr, G.4
Blagoev, B.5
Kornau, H.C.6
-
7
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
Blagoev, B., Kratchmarova, I., Ong, S. E., Nielsen, M., Foster, L. J., and Mann, M. (2003). A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat. Biotechnol. 21, 315-318. doi: 10.1038/nbt790.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 315-318
-
-
Blagoev, B.1
Kratchmarova, I.2
Ong, S.E.3
Nielsen, M.4
Foster, L.J.5
Mann, M.6
-
8
-
-
46349091971
-
The social network of a cell: recent advances in interactome mapping
-
Charbonnier, S., Gallego, O., and Gavin, A. C. (2008). The social network of a cell: recent advances in interactome mapping. Biotechnol. Annu. Rev. 14, 1-28. doi: 10.1016/S1387-2656(08)00001-X.
-
(2008)
Biotechnol. Annu. Rev
, vol.14
, pp. 1-28
-
-
Charbonnier, S.1
Gallego, O.2
Gavin, A.C.3
-
9
-
-
4444241998
-
A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension
-
Cheeseman, I. M., Niessen, S., Anderson, S., Hyndman, F., Yates, J. R. III, Oegema, K., et al. (2004). A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension. Genes Dev. 18, 2255-2268. doi: 10.1101/gad.1234104.
-
(2004)
Genes Dev
, vol.18
, pp. 2255-2268
-
-
Cheeseman, I.M.1
Niessen, S.2
Anderson, S.3
Hyndman, F.4
Yates, J.R.5
Oegema, K.6
-
10
-
-
84938749158
-
Exposing the subunit diversity and modularity of protein complexes by structural mass spectrometry approaches
-
[Epub ahead of print]
-
Chorev, D. S., Ben-Nissan, G., and Sharon, M. (2015). Exposing the subunit diversity and modularity of protein complexes by structural mass spectrometry approaches. Proteomics doi: 10.1002/pmic.201400517 [Epub ahead of print].
-
(2015)
Proteomics
-
-
Chorev, D.S.1
Ben-Nissan, G.2
Sharon, M.3
-
11
-
-
84888858053
-
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system
-
Collins, B. C., Gillet, L. C., Rosenberger, G., Rost, H. L., Vichalkovski, A., Gstaiger, M., et al. (2013). Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system. Nat. Methods 10, 1246-1253. doi: 10.1038/nmeth.2703.
-
(2013)
Nat. Methods
, vol.10
, pp. 1246-1253
-
-
Collins, B.C.1
Gillet, L.C.2
Rosenberger, G.3
Rost, H.L.4
Vichalkovski, A.5
Gstaiger, M.6
-
12
-
-
84907197082
-
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
-
Cox, J., Hein, M. Y., Luber, C. A., Paron, I., Nagaraj, N., and Mann, M. (2014). Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol. Cell. Proteomics 13, 2513-2526. doi: 10.1074/mcp.M113.031591.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 2513-2526
-
-
Cox, J.1
Hein, M.Y.2
Luber, C.A.3
Paron, I.4
Nagaraj, N.5
Mann, M.6
-
13
-
-
79959424627
-
Quantitative, high-resolution proteomics for data-driven systems biology
-
Cox, J., and Mann, M. (2011). Quantitative, high-resolution proteomics for data-driven systems biology. Annu. Rev. Biochem. 80, 273-299. doi: 10.1146/annurev-biochem-061308-093216.
-
(2011)
Annu. Rev. Biochem
, vol.80
, pp. 273-299
-
-
Cox, J.1
Mann, M.2
-
14
-
-
77954513767
-
The pros and cons of peptide-centric proteomics
-
Duncan, M. W., Aebersold, R., and Caprioli, R. M. (2010). The pros and cons of peptide-centric proteomics. Nat. Biotechnol. 28, 659-664. doi: 10.1038/nbt0710-659.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 659-664
-
-
Duncan, M.W.1
Aebersold, R.2
Caprioli, R.M.3
-
15
-
-
80555146717
-
A face in the crowd: recognizing peptides through database search
-
Eng, J. K., Searle, B. C., Clauser, K. R., and Tabb, D. L. (2011). A face in the crowd: recognizing peptides through database search. Mol. Cell. Proteomics 10, R111 009522. doi: 10.1074/mcp.R111.009522.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Eng, J.K.1
Searle, B.C.2
Clauser, K.R.3
Tabb, D.L.4
-
16
-
-
84861112803
-
Mapping the protein interaction network of the human COP9 signalosome complex using a label-free QTAX strategy
-
Fang, L., Kaake, R. M., Patel, V. R., Yang, Y., Baldi, P., and Huang, L. (2012). Mapping the protein interaction network of the human COP9 signalosome complex using a label-free QTAX strategy. Mol. Cell. Proteomics 11, 138-147. doi: 10.1074/mcp.M111.016352.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 138-147
-
-
Fang, L.1
Kaake, R.M.2
Patel, V.R.3
Yang, Y.4
Baldi, P.5
Huang, L.6
-
17
-
-
84908384021
-
Global analysis of protein structural changes in complex proteomes
-
Feng, Y., De Franceschi, G., Kahraman, A., Soste, M., Melnik, A., Boersema, P. J., et al. (2014). Global analysis of protein structural changes in complex proteomes. Nat. Biotechnol. 32, 1036-1044. doi: 10.1038/nbt.2999.
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 1036-1044
-
-
Feng, Y.1
De Franceschi, G.2
Kahraman, A.3
Soste, M.4
Melnik, A.5
Boersema, P.J.6
-
18
-
-
84884586861
-
Functional proteomics defines the molecular switch underlying FGF receptor trafficking and cellular outputs
-
Francavilla, C., Rigbolt, K. T., Emdal, K. B., Carraro, G., Vernet, E., Bekker-Jensen, D. B., et al. (2013). Functional proteomics defines the molecular switch underlying FGF receptor trafficking and cellular outputs. Mol. Cell. 51, 707-722. doi: 10.1016/j.molcel.2013.08.002.
-
(2013)
Mol. Cell
, vol.51
, pp. 707-722
-
-
Francavilla, C.1
Rigbolt, K.T.2
Emdal, K.B.3
Carraro, G.4
Vernet, E.5
Bekker-Jensen, D.B.6
-
19
-
-
34547131554
-
Analysis of protein complexes using mass spectrometry
-
Gingras, A. C., Gstaiger, M., Raught, B., and Aebersold, R. (2007). Analysis of protein complexes using mass spectrometry. Nat. Rev. Mol. Cell Biol. 8, 645-654. doi: 10.1038/nrm2208.
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
20
-
-
84864619937
-
Beyond hairballs: the use of quantitative mass spectrometry data to understand protein-protein interactions
-
Gingras, A. C., and Raught, B. (2012). Beyond hairballs: the use of quantitative mass spectrometry data to understand protein-protein interactions. FEBS Lett. 586, 2723-2731. doi: 10.1016/j.febslet.2012.03.065.
-
(2012)
FEBS Lett
, vol.586
, pp. 2723-2731
-
-
Gingras, A.C.1
Raught, B.2
-
21
-
-
68949206409
-
Applying mass spectrometry-based proteomics to genetics, genomics and network biology
-
Gstaiger, M., and Aebersold, R. (2009). Applying mass spectrometry-based proteomics to genetics, genomics and network biology. Nat. Rev. Genet. 10, 617-627. doi: 10.1038/nrg2633.
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 617-627
-
-
Gstaiger, M.1
Aebersold, R.2
-
22
-
-
84922708295
-
GABA Blocks Pathological but Not Acute TRPV1 Pain Signals
-
Hanack, C., Moroni, M., Lima, W. C., Wende, H., Kirchner, M., Adelfinger, L., et al. (2015). GABA Blocks Pathological but Not Acute TRPV1 Pain Signals. Cell 160, 759-770. doi: 10.1016/j.cell.2015.01.022.
-
(2015)
Cell
, vol.160
, pp. 759-770
-
-
Hanack, C.1
Moroni, M.2
Lima, W.C.3
Wende, H.4
Kirchner, M.5
Adelfinger, L.6
-
23
-
-
84929709547
-
Quantitative interaction proteomics of neurodegenerative disease proteins
-
Hosp, F., Vossfeldt, H., Heinig, M., Vasiljevic, D., Arumughan, A., Wyler, E., et al. (2015). Quantitative interaction proteomics of neurodegenerative disease proteins. Cell Rep. 11, 1134-1146. doi: 10.1016/j.celrep.2015.04.030.
-
(2015)
Cell Rep
, vol.11
, pp. 1134-1146
-
-
Hosp, F.1
Vossfeldt, H.2
Heinig, M.3
Vasiljevic, D.4
Arumughan, A.5
Wyler, E.6
-
24
-
-
77952344256
-
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions
-
Hubner, N. C., Bird, A. W., Cox, J., Splettstoesser, B., Bandilla, P., Poser, I., et al. (2010). Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions. J. Cell Biol. 189, 739-754. doi: 10.1083/jcb.200911091.
-
(2010)
J. Cell Biol
, vol.189
, pp. 739-754
-
-
Hubner, N.C.1
Bird, A.W.2
Cox, J.3
Splettstoesser, B.4
Bandilla, P.5
Poser, I.6
-
25
-
-
84921469305
-
A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells
-
Kaake, R. M., Wang, X., Burke, A., Yu, C., Kandur, W., Yang, Y., et al. (2014). A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells. Mol. Cell. Proteomics 13, 3533-3543. doi: 10.1074/mcp.M114.042630.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 3533-3543
-
-
Kaake, R.M.1
Wang, X.2
Burke, A.3
Yu, C.4
Kandur, W.5
Yang, Y.6
-
26
-
-
84864137161
-
In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments
-
Kirchner, M., and Selbach, M. (2012). In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments. Methods Mol. Biol. 893, 175-199. doi: 10.1007/978-1-61779-885-6_13.
-
(2012)
Methods Mol. Biol
, vol.893
, pp. 175-199
-
-
Kirchner, M.1
Selbach, M.2
-
27
-
-
84888871108
-
Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition
-
Lambert, J. P., Ivosev, G., Couzens, A. L., Larsen, B., Taipale, M., Lin, Z. Y., et al. (2013). Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition. Nat. Methods 10, 1239-1245. doi: 10.1038/nmeth.2702.
-
(2013)
Nat. Methods
, vol.10
, pp. 1239-1245
-
-
Lambert, J.P.1
Ivosev, G.2
Couzens, A.L.3
Larsen, B.4
Taipale, M.5
Lin, Z.Y.6
-
28
-
-
84914162421
-
Comparing SILAC-and stable isotope dimethyl-labeling approaches for quantitative proteomics
-
Lau, H. T., Suh, H. W., Golkowski, M., and Ong, S. E. (2014). Comparing SILAC-and stable isotope dimethyl-labeling approaches for quantitative proteomics. J. Proteome Res. 13, 4164-4174. doi: 10.1021/pr500630a.
-
(2014)
J. Proteome Res
, vol.13
, pp. 4164-4174
-
-
Lau, H.T.1
Suh, H.W.2
Golkowski, M.3
Ong, S.E.4
-
29
-
-
84921515827
-
Protein painting reveals solvent-excluded drug targets hidden within native protein-protein interfaces
-
Luchini, A., Espina, V., and Liotta, L. A. (2014). Protein painting reveals solvent-excluded drug targets hidden within native protein-protein interfaces. Nat. Commun. 5, 4413. doi: 10.1038/ncomms5413.
-
(2014)
Nat. Commun
, vol.5
, pp. 4413
-
-
Luchini, A.1
Espina, V.2
Liotta, L.A.3
-
30
-
-
84905379444
-
Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics
-
Lundby, A., Rossin, E. J., Steffensen, A. B., Acha, M. R., Newton-Cheh, C., Pfeufer, A., et al. (2014). Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. Nat. Methods 11, 868-874. doi: 10.1038/nmeth.2997.
-
(2014)
Nat. Methods
, vol.11
, pp. 868-874
-
-
Lundby, A.1
Rossin, E.J.2
Steffensen, A.B.3
Acha, M.R.4
Newton-Cheh, C.5
Pfeufer, A.6
-
31
-
-
79957575162
-
Analysis of the human endogenous coregulator complexome
-
Malovannaya, A., Lanz, R. B., Jung, S. Y., Bulynko, Y., Le, N. T., Chan, D. W., et al. (2011). Analysis of the human endogenous coregulator complexome. Cell 145, 787-799. doi: 10.1016/j.cell.2011.05.006.
-
(2011)
Cell
, vol.145
, pp. 787-799
-
-
Malovannaya, A.1
Lanz, R.B.2
Jung, S.Y.3
Bulynko, Y.4
Le, N.T.5
Chan, D.W.6
-
32
-
-
21344450047
-
Measurement of solvent accessibility at protein-protein interfaces
-
Mandell, J. G., Baerga-Ortiz, A., Falick, A. M., and Komives, E. A. (2005). Measurement of solvent accessibility at protein-protein interfaces. Methods Mol. Biol. 305, 65-80. doi: 10.1385/1-59259-912-5:065.
-
(2005)
Methods Mol. Biol
, vol.305
, pp. 65-80
-
-
Mandell, J.G.1
Baerga-Ortiz, A.2
Falick, A.M.3
Komives, E.A.4
-
33
-
-
84881475940
-
The CRAPome: a contaminant repository for affinity purification-mass spectrometry data
-
Mellacheruvu, D., Wright, Z., Couzens, A. L., Lambert, J. P., St-Denis, N. A., Li, T., et al. (2013). The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nat. Methods 10, 730-736. doi: 10.1038/nmeth.2557.
-
(2013)
Nat. Methods
, vol.10
, pp. 730-736
-
-
Mellacheruvu, D.1
Wright, Z.2
Couzens, A.L.3
Lambert, J.P.4
St-Denis, N.A.5
Li, T.6
-
34
-
-
84954584091
-
'Methods in Molecular Biology,'
-
1st Edn. eds C. L. Meyerkord and H. Fu (New York: Humana Press)
-
Meyerkord, C. L., and Fu, H. (2015). "Methods in Molecular Biology," in Protein-Protein Interactions: Methods and Applications, 1st Edn, eds C. L. Meyerkord and H. Fu (New York: Humana Press), 620. doi: 10.1007/978-1-4939-2425-7.
-
(2015)
Protein-Protein Interactions: Methods and Applications
, pp. 620
-
-
Meyerkord, C.L.1
Fu, H.2
-
35
-
-
43849110454
-
Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes
-
Mousson, F., Kolkman, A., Pijnappel, W. W., Timmers, H. T., and Heck, A. J. (2008). Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol. Cell. Proteomics 7, 845-852. doi: 10.1074/mcp.M700306-MCP200.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 845-852
-
-
Mousson, F.1
Kolkman, A.2
Pijnappel, W.W.3
Timmers, H.T.4
Heck, A.J.5
-
36
-
-
67650403796
-
Selective enrichment of azide-containing peptides from complex mixtures
-
Nessen, M. A., Kramer, G., Back, J., Baskin, J. M., Smeenk, L. E., De Koning, L. J., et al. (2009). Selective enrichment of azide-containing peptides from complex mixtures. J. Proteome Res. 8, 3702-3711. doi: 10.1021/pr900257z.
-
(2009)
J. Proteome Res
, vol.8
, pp. 3702-3711
-
-
Nessen, M.A.1
Kramer, G.2
Back, J.3
Baskin, J.M.4
Smeenk, L.E.5
De Koning, L.J.6
-
37
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., et al. (2002). Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386. doi: 10.1074/mcp.M200025-MCP200.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
-
38
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S. E., and Mann, M. (2005). Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1, 252-262. doi: 10.1038/nchembio736.
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
39
-
-
79959211995
-
Analyzing protein-protein interactions by quantitative mass spectrometry
-
Paul, F. E., Hosp, F., and Selbach, M. (2011). Analyzing protein-protein interactions by quantitative mass spectrometry. Methods 54, 387-395. doi: 10.1016/j.ymeth.2011.03.001.
-
(2011)
Methods
, vol.54
, pp. 387-395
-
-
Paul, F.E.1
Hosp, F.2
Selbach, M.3
-
40
-
-
0034841844
-
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
-
Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., et al. (2001). The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24, 218-229. doi: 10.1006/meth.2001.1183.
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
-
41
-
-
79851513173
-
The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
-
Rappsilber, J. (2011). The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J. Struct. Biol. 173, 530-540. doi: 10.1016/j.jsb.2010.10.014.
-
(2011)
J. Struct. Biol
, vol.173
, pp. 530-540
-
-
Rappsilber, J.1
-
42
-
-
79958007632
-
In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry
-
Rees, J. S., Lowe, N., Armean, I. M., Roote, J., Johnson, G., Drummond, E., et al. (2011). In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Mol. Cell. Proteomics 10, M110 002386. doi: 10.1074/mcp.M110.002386.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Rees, J.S.1
Lowe, N.2
Armean, I.M.3
Roote, J.4
Johnson, G.5
Drummond, E.6
-
43
-
-
33947182552
-
An integrated mass spectrometric and computational framework for the analysis of protein interaction networks
-
Rinner, O., Mueller, L. N., Hubalek, M., Muller, M., Gstaiger, M., and Aebersold, R. (2007). An integrated mass spectrometric and computational framework for the analysis of protein interaction networks. Nat. Biotechnol. 25, 345-352. doi: 10.1038/nbt1289.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 345-352
-
-
Rinner, O.1
Mueller, L.N.2
Hubalek, M.3
Muller, M.4
Gstaiger, M.5
Aebersold, R.6
-
44
-
-
41449110185
-
Identification of cross-linked peptides from large sequence databases
-
Rinner, O., Seebacher, J., Walzthoeni, T., Mueller, L. N., Beck, M., Schmidt, A., et al. (2008). Identification of cross-linked peptides from large sequence databases. Nat. Methods 5, 315-318. doi: 10.1038/nmeth.1192.
-
(2008)
Nat. Methods
, vol.5
, pp. 315-318
-
-
Rinner, O.1
Seebacher, J.2
Walzthoeni, T.3
Mueller, L.N.4
Beck, M.5
Schmidt, A.6
-
45
-
-
84900314611
-
CRISPR-Cas systems for editing, regulating and targeting genomes
-
Sander, J. D., and Joung, J. K. (2014). CRISPR-Cas systems for editing, regulating and targeting genomes. Nat. Biotechnol. 32, 347-355. doi: 10.1038/nbt.2842.
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 347-355
-
-
Sander, J.D.1
Joung, J.K.2
-
46
-
-
77950395166
-
Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring
-
Schmidt, C., Lenz, C., Grote, M., Luhrmann, R., and Urlaub, H. (2010). Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring. Anal. Chem. 82, 2784-2796. doi: 10.1021/ac902710k.
-
(2010)
Anal. Chem
, vol.82
, pp. 2784-2796
-
-
Schmidt, C.1
Lenz, C.2
Grote, M.3
Luhrmann, R.4
Urlaub, H.5
-
47
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., et al. (2011). Global quantification of mammalian gene expression control. Nature 473, 337-342. doi: 10.1038/nature10098.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
-
48
-
-
33751230224
-
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK)
-
Selbach, M., and Mann, M. (2006). Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK). Nat. Methods 3, 981-983. doi: 10.1038/nmeth972.
-
(2006)
Nat. Methods
, vol.3
, pp. 981-983
-
-
Selbach, M.1
Mann, M.2
-
49
-
-
64649100982
-
Host cell interactome of tyrosine-phosphorylated bacterial proteins
-
Selbach, M., Paul, F. E., Brandt, S., Guye, P., Daumke, O., Backert, S., et al. (2009). Host cell interactome of tyrosine-phosphorylated bacterial proteins. Cell Host. Microbe. 5, 397-403. doi: 10.1016/j.chom.2009.03.004.
-
(2009)
Cell Host. Microbe
, vol.5
, pp. 397-403
-
-
Selbach, M.1
Paul, F.E.2
Brandt, S.3
Guye, P.4
Daumke, O.5
Backert, S.6
-
50
-
-
70349624519
-
Proteomics strategy for quantitative protein interaction profiling in cell extracts
-
Sharma, K., Weber, C., Bairlein, M., Greff, Z., Keri, G., Cox, J., et al. (2009). Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nat. Methods 6, 741-744. doi: 10.1038/nmeth.1373.
-
(2009)
Nat. Methods
, vol.6
, pp. 741-744
-
-
Sharma, K.1
Weber, C.2
Bairlein, M.3
Greff, Z.4
Keri, G.5
Cox, J.6
-
51
-
-
84871740411
-
Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics
-
Smits, A. H., Jansen, P. W., Poser, I., Hyman, A. A., and Vermeulen, M. (2013). Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics. Nucleic Acids Res. 41, e28. doi: 10.1093/nar/gks941.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Smits, A.H.1
Jansen, P.W.2
Poser, I.3
Hyman, A.A.4
Vermeulen, M.5
-
52
-
-
77958018495
-
The SILAC fly allows for accurate protein quantification in vivo
-
Sury, M. D., Chen, J. X., and Selbach, M. (2010). The SILAC fly allows for accurate protein quantification in vivo. Mol. Cell. Proteomics 9, 2173-2183. doi: 10.1074/mcp.M110.000323.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2173-2183
-
-
Sury, M.D.1
Chen, J.X.2
Selbach, M.3
-
53
-
-
84920473846
-
Quantitative proteomics reveals dynamic interaction of c-Jun N-terminal kinase (JNK) with RNA transport granule proteins splicing factor proline-and glutamine-rich (Sfpq) and non-POU domain-containing octamer-binding protein (Nono) during neuronal differentiation
-
Sury, M. D., Mcshane, E., Hernandez-Miranda, L. R., Birchmeier, C., and Selbach, M. (2015). Quantitative proteomics reveals dynamic interaction of c-Jun N-terminal kinase (JNK) with RNA transport granule proteins splicing factor proline-and glutamine-rich (Sfpq) and non-POU domain-containing octamer-binding protein (Nono) during neuronal differentiation. Mol. Cell. Proteomics 14, 50-65. doi: 10.1074/mcp.M114.039370.
-
(2015)
Mol. Cell. Proteomics
, vol.14
, pp. 50-65
-
-
Sury, M.D.1
Mcshane, E.2
Hernandez-Miranda, L.R.3
Birchmeier, C.4
Selbach, M.5
-
54
-
-
38049146018
-
Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking
-
Tardiff, D. F., Abruzzi, K. C., and Rosbash, M. (2007). Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking. Proc. Natl. Acad. Sci. U.S.A. 104, 19948-19953. doi: 10.1073/pnas.0710179104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 19948-19953
-
-
Tardiff, D.F.1
Abruzzi, K.C.2
Rosbash, M.3
-
55
-
-
84899745266
-
Elution profile analysis of SDS-induced subcomplexes by quantitative mass spectrometry
-
Texier, Y., Toedt, G., Gorza, M., Mans, D. A., Van Reeuwijk, J., Horn, N., et al. (2014). Elution profile analysis of SDS-induced subcomplexes by quantitative mass spectrometry. Mol. Cell. Proteomics 13, 1382-1391. doi: 10.1074/mcp.O113.033233.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1382-1391
-
-
Texier, Y.1
Toedt, G.2
Gorza, M.3
Mans, D.A.4
Van Reeuwijk, J.5
Horn, N.6
-
56
-
-
49549121813
-
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry
-
Vermeulen, M., Hubner, N. C., and Mann, M. (2008). High confidence determination of specific protein-protein interactions using quantitative mass spectrometry. Curr. Opin. Biotechnol. 19, 331-337. doi: 10.1016/j.copbio.2008.06.001.
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 331-337
-
-
Vermeulen, M.1
Hubner, N.C.2
Mann, M.3
-
57
-
-
84878620367
-
Mass spectrometry supported determination of protein complex structure
-
Walzthoeni, T., Leitner, A., Stengel, F., and Aebersold, R. (2013). Mass spectrometry supported determination of protein complex structure. Curr. Opin. Struct. Biol. 23, 252-260. doi: 10.1016/j.sbi.2013.02.008.
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 252-260
-
-
Walzthoeni, T.1
Leitner, A.2
Stengel, F.3
Aebersold, R.4
-
58
-
-
39049117451
-
Identifying dynamic interactors of protein complexes by quantitative mass spectrometry
-
Wang, X., and Huang, L. (2008). Identifying dynamic interactors of protein complexes by quantitative mass spectrometry. Mol. Cell. Proteomics 7, 46-57. doi: 10.1074/mcp.M700261-MCP200.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 46-57
-
-
Wang, X.1
Huang, L.2
-
59
-
-
61449237172
-
Quantitative interaction proteomics using mass spectrometry
-
Wepf, A., Glatter, T., Schmidt, A., Aebersold, R., and Gstaiger, M. (2009). Quantitative interaction proteomics using mass spectrometry. Nat. Methods 6, 203-205. doi: 10.1038/nmeth.1302.
-
(2009)
Nat. Methods
, vol.6
, pp. 203-205
-
-
Wepf, A.1
Glatter, T.2
Schmidt, A.3
Aebersold, R.4
Gstaiger, M.5
-
60
-
-
84880441014
-
Temporal regulation of EGF signalling networks by the scaffold protein Shc1
-
Zheng, Y., Zhang, C., Croucher, D. R., Soliman, M. A., St-Denis, N., Pasculescu, A., et al. (2013). Temporal regulation of EGF signalling networks by the scaffold protein Shc1. Nature 499, 166-171. doi: 10.1038/nature12308.
-
(2013)
Nature
, vol.499
, pp. 166-171
-
-
Zheng, Y.1
Zhang, C.2
Croucher, D.R.3
Soliman, M.A.4
St-Denis, N.5
Pasculescu, A.6
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