-
1
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M. et al. A draft map of the human proteome. Nature 509, 575-81 (2014).
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.1
-
2
-
-
78650130580
-
Interactome under construction
-
Bonetta, L. Interactome under construction. Nature 468, 851-854 (2010).
-
(2010)
Nature
, vol.468
, pp. 851-854
-
-
Bonetta, L.1
-
3
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R. & Mann, M. Mass spectrometry-based proteomics. Nature 422, 198-207 (2003).
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
4
-
-
84881475940
-
The CRAPome: A contaminant repository for affinity purification-mass spectrometry data
-
Mellacheruvu, D., Wright, Z. & Couzens, A. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nat. Methods 10, 730-736 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 730-736
-
-
Mellacheruvu, D.1
Wright, Z.2
Couzens, A.3
-
5
-
-
31744440828
-
Protein-protein interaction assays: Eliminating false positive interactions
-
Nguyen, T. & Goodrich, J. Protein-protein interaction assays: eliminating false positive interactions. Nat. Methods 3, 135-139 (2006).
-
(2006)
Nat. Methods
, vol.3
, pp. 135-139
-
-
Nguyen, T.1
Goodrich, J.2
-
6
-
-
84876458624
-
High-throughput cloning and expression library creation for functional proteomics
-
Festa, F., Steel, J., Bian, X. & Labaer, J. High-throughput cloning and expression library creation for functional proteomics. Proteomics 13, 1381-99 (2013).
-
(2013)
Proteomics
, vol.13
, pp. 1381-1399
-
-
Festa, F.1
Steel, J.2
Bian, X.3
Labaer, J.4
-
7
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual, J.-F. et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature 437, 1173-8 (2005).
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.-F.1
-
8
-
-
33947219266
-
Large-scale mapping of human protein-protein interactions by mass spectrometry
-
Ewing, R., Chu, P. & Elisma, F. Large-scale mapping of human protein-protein interactions by mass spectrometry. Mol. Syst. Biol. 3, 89 (2007).
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 89
-
-
Ewing, R.1
Chu, P.2
Elisma, F.3
-
9
-
-
56049095074
-
Exploration of human ORFeome: High-throughput preparation of ORF clones and efficient characterization of their protein products
-
Nagase, T. et al. Exploration of human ORFeome: high-throughput preparation of ORF clones and efficient characterization of their protein products. DNA Res. 15, 137-49 (2008).
-
(2008)
DNA Res.
, vol.15
, pp. 137-149
-
-
Nagase, T.1
-
10
-
-
75549084784
-
High-throughput construction of ORF clones for production of the recombinant proteins
-
Yamakawa, H. High-throughput construction of ORF clones for production of the recombinant proteins. Methods Mol Biol 577, 25-39 (2009).
-
(2009)
Methods Mol Biol
, vol.577
, pp. 25-39
-
-
Yamakawa, H.1
-
11
-
-
84901933415
-
Controlling for gene expression changes in transcription factor protein networks
-
Banks, C. A. S. et al. Controlling for gene expression changes in transcription factor protein networks. Mol. Cell. Proteomics 13, 1510-22 (2014).
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1510-1522
-
-
Banks, C.A.S.1
-
12
-
-
0035839424
-
Identification of a novel A20-binding inhibitor of nuclear factor-kappa B activation termed ABIN-2
-
Van Huffel, S., Delaei, F., Heyninck, K., De Valck, D. & Beyaert, R. Identification of a novel A20-binding inhibitor of nuclear factor-kappa B activation termed ABIN-2. J. Biol. Chem. 276, 30216-23 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30216-30223
-
-
Van Huffel, S.1
Delaei, F.2
Heyninck, K.3
De Valck, D.4
Beyaert, R.5
-
13
-
-
2942594766
-
ABIN-2 forms a ternary complex with TPL-2 and NF-kappa B1 p105 and is essential for TPL-2 protein stability
-
Lang, V. et al. ABIN-2 forms a ternary complex with TPL-2 and NF-kappa B1 p105 and is essential for TPL-2 protein stability. Mol. Cell. Biol. 24, 5235-48 (2004).
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5235-5248
-
-
Lang, V.1
-
14
-
-
0028040007
-
Molecular cloning of a novel protein-tyrosine phosphatase containing a membrane-binding domain and GLGF repeats
-
Maekawa, K., Imagawa, N., Nagamatsu, M. & Harada, S. Molecular cloning of a novel protein-tyrosine phosphatase containing a membrane-binding domain and GLGF repeats. FEBS Lett. 337, 200-6 (1994).
-
(1994)
FEBS Lett.
, vol.337
, pp. 200-206
-
-
Maekawa, K.1
Imagawa, N.2
Nagamatsu, M.3
Harada, S.4
-
15
-
-
0034353278
-
Identification of IkappaBalpha as a substrate of Fasassociated phosphatase-1
-
Nakai, Y., Irie, S. & Sato, T. A. Identification of IkappaBalpha as a substrate of Fasassociated phosphatase-1. Eur. J. Biochem. 267, 7170-5 (2000).
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 7170-7175
-
-
Nakai, Y.1
Irie, S.2
Sato, T.A.3
-
16
-
-
0030888599
-
The molecular interaction of Fas and FAP-1. A tripeptide blocker of human Fas interaction with FAP-1 promotes Fas-induced apoptosis
-
Yanagisawa, J. et al. The molecular interaction of Fas and FAP-1. A tripeptide blocker of human Fas interaction with FAP-1 promotes Fas-induced apoptosis. J. Biol. Chem. 272, 8539-8545 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 8539-8545
-
-
Yanagisawa, J.1
-
17
-
-
79952996490
-
PTPN13/PTPL1: An important regulator of tumor aggressiveness
-
Freiss, G. & Chalbos, D. PTPN13/PTPL1: an important regulator of tumor aggressiveness. Anticancer. Agents Med. Chem. 11, 78-88 (2011).
-
(2011)
Anticancer. Agents Med. Chem.
, vol.11
, pp. 78-88
-
-
Freiss, G.1
Chalbos, D.2
-
18
-
-
0038825338
-
The KIND module: A putative signalling domain evolved from the C lobe of the protein kinase fold
-
Ciccarelli, F., Bork, P. & Kerkhoff, E. The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold. Trends Biochem. Sci. 28, 349-352 (2003).
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 349-352
-
-
Ciccarelli, F.1
Bork, P.2
Kerkhoff, E.3
-
19
-
-
77958502225
-
The FERM domain: Organizing the structure and function of FAK
-
Frame, M. C., Patel, H., Serrels, B., Lietha, D. & Eck, M. J. The FERM domain: organizing the structure and function of FAK. Nat. Rev. Mol. Cell Biol. 11, 802-14 (2010).
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 802-814
-
-
Frame, M.C.1
Patel, H.2
Serrels, B.3
Lietha, D.4
Eck, M.J.5
-
21
-
-
0030293766
-
Protein-protein interactions: PDZ domain networks
-
Fanning, A. S. & Anderson, J. M. Protein-protein interactions: PDZ domain networks. Curr. Biol. 6, 1385-8 (1996).
-
(1996)
Curr. Biol.
, vol.6
, pp. 1385-1388
-
-
Fanning, A.S.1
Anderson, J.M.2
-
22
-
-
15644379801
-
Recognition of unique carboxyl-terminal motifs by distinct PDZ domains
-
Songyang, Z. Recognition of unique carboxyl-terminal motifs by distinct PDZ domains. Science 275, 73-77 (1997).
-
(1997)
Science
, vol.275
, pp. 73-77
-
-
Songyang, Z.1
-
23
-
-
0030604722
-
Crystal structures of a complexed and peptide-free membrane protein-binding domain: Molecular basis of peptide recognition by PDZ
-
Doyle, D. a. et al. Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Cell 85, 1067-76 (1996).
-
(1996)
Cell
, vol.85
, pp. 1067-1076
-
-
Doyle, D.A.1
-
24
-
-
79551517793
-
Recent advances in charting protein-protein interaction: Mass spectrometry-based approaches
-
Gavin, A.-C., Maeda, K. & Kühner, S. Recent advances in charting protein-protein interaction: mass spectrometry-based approaches. Curr. Opin. Biotechnol. 22, 42-9 (2011).
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 42-49
-
-
Gavin, A.-C.1
Maeda, K.2
Kühner, S.3
-
25
-
-
84861897793
-
Mass spectrometry-based proteomics and network biology
-
Bensimon, A., Heck, A. J. R. & Aebersold, R. Mass Spectrometry-Based Proteomics and Network Biology. Annu. Rev. Biochem. 81, 1-27 (2012).
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 1-27
-
-
Bensimon, A.1
Heck, A.J.R.2
Aebersold, R.3
-
27
-
-
79960084378
-
Protein-protein interactions: Analysis of a false positive GST pulldown result
-
Wissmueller, S. et al. Protein-protein interactions: analysis of a false positive GST pulldown result. Proteins 79, 2365-71 (2011).
-
(2011)
Proteins
, vol.79
, pp. 2365-2371
-
-
Wissmueller, S.1
-
28
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y. et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-3 (2002).
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
29
-
-
67649634849
-
Defining the human deubiquitinating enzyme interaction landscape
-
Sowa, M. E., Bennett, E. J., Gygi, S. P. & Harper, J. W. Defining the human deubiquitinating enzyme interaction landscape. Cell 138, 389-403 (2009).
-
(2009)
Cell
, vol.138
, pp. 389-403
-
-
Sowa, M.E.1
Bennett, E.J.2
Gygi, S.P.3
Harper, J.W.4
-
30
-
-
84881437733
-
The transience of transient overexpression
-
Gibson, T. J., Seiler, M. & Veitia, R. A. The transience of transient overexpression. Nat. Methods 10, 715-721 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 715-721
-
-
Gibson, T.J.1
Seiler, M.2
Veitia, R.A.3
-
31
-
-
54749086397
-
A specificity map for the PDZ domain family
-
Tonikian, R. et al. A specificity map for the PDZ domain family. PLoS Biol. 6, e239 (2008).
-
(2008)
PLoS Biol.
, vol.6
, pp. e239
-
-
Tonikian, R.1
-
32
-
-
33846563409
-
Why most published research findings are false
-
Ioannidis, J. P. A. Why most published research findings are false. PLoS Med. 2, e124 (2005).
-
(2005)
PLoS Med.
, vol.2
, pp. e124
-
-
Ioannidis, J.P.A.1
-
33
-
-
80055088241
-
Believe it or not: How much can we rely on published data on potential drug targets?
-
Prinz, F., Schlange, T. & Asadullah, K. Believe it or not: how much can we rely on published data on potential drug targets? Nat. Rev. Drug Discov. 10, 712 (2011).
-
(2011)
Nat. Rev. Drug Discov.
, vol.10
, pp. 712
-
-
Prinz, F.1
Schlange, T.2
Asadullah, K.3
-
34
-
-
84864225382
-
Face up to false positives
-
Macarthur, D. Face up to false positives. Nature 487, 427-428 (2012).
-
(2012)
Nature
, vol.487
, pp. 427-428
-
-
MacArthur, D.1
-
35
-
-
84875880985
-
If a job is worth doing, it is worth doing twice
-
Russell, J. F. If a job is worth doing, it is worth doing twice. Nature 496, 7 (2013).
-
(2013)
Nature
, vol.496
, pp. 7
-
-
Russell, J.F.1
-
36
-
-
27644576841
-
High-throughput two-hybrid analysis. The promise and the peril
-
Fields, S. High-throughput two-hybrid analysis. The promise and the peril. FEBS J. 272, 5391-9 (2005).
-
(2005)
FEBS J.
, vol.272
, pp. 5391-5399
-
-
Fields, S.1
-
37
-
-
36249019164
-
Protein interactions: Is seeing believing?
-
Mackay, J. P., Sunde, M., Lowry, J. A., Crossley, M. & Matthews, J. M. Protein interactions: is seeing believing? Trends Biochem. Sci. 32, 530-1 (2007).
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 530-531
-
-
MacKay, J.P.1
Sunde, M.2
Lowry, J.A.3
Crossley, M.4
Matthews, J.M.5
-
38
-
-
4344682825
-
The CBP/p300 TAZ1 domain in its native state is not a binding partner of MDM2
-
Matt, T., Martinez-Yamout, M., Dyson, H. & Wright, P. The CBP/p300 TAZ1 domain in its native state is not a binding partner of MDM2. Biochem. J 381, 685-91 (2004).
-
(2004)
Biochem. J
, vol.381
, pp. 685-691
-
-
Matt, T.1
Martinez-Yamout, M.2
Dyson, H.3
Wright, P.4
-
39
-
-
34547593865
-
Embryonic neural inducing factor churchill is not a DNA-binding zinc finger protein: Solution structure reveals a solvent-exposed beta-sheet and zinc binuclear cluster
-
Lee, B., Buck-Koehntop, B., Martinez-Yamout, M., Dyson, H. & Wright, P. Embryonic neural inducing factor churchill is not a DNA-binding zinc finger protein: solution structure reveals a solvent-exposed beta-sheet and zinc binuclear cluster. J. Mol. Biol. 371, 1274-1289 (2007).
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 1274-1289
-
-
Lee, B.1
Buck-Koehntop, B.2
Martinez-Yamout, M.3
Dyson, H.4
Wright, P.5
-
40
-
-
84934437366
-
Flexi vector cloning
-
Blommel, P. G., Martin, P. A., Seder, K. D., Wrobel, R. L. & Fox, B. G. Flexi Vector Cloning. Methods Mol. Biol. 498, 55-73 (2009).
-
(2009)
Methods Mol. Biol.
, vol.498
, pp. 55-73
-
-
Blommel, P.G.1
Martin, P.A.2
Seder, K.D.3
Wrobel, R.L.4
Fox, B.G.5
-
41
-
-
33746500659
-
Proteomic analysis by multidimensional protein identification technology
-
Florens, L. & Washburn, M. P. Proteomic analysis by multidimensional protein identification technology. Methods Mol. Biol. 328, 159-75 (2006).
-
(2006)
Methods Mol. Biol.
, vol.328
, pp. 159-175
-
-
Florens, L.1
Washburn, M.P.2
-
42
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L. & Yates, J. R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989 (1994).
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
43
-
-
0036393898
-
DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L., McDonald, W. H. & Yates, J. R. DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-6 (2002).
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates, J.R.3
-
44
-
-
77949795829
-
Refinements to label free proteome quantitation: How to deal with peptides shared by multiple proteins
-
Zhang, Y., Wen, Z., Washburn, M. P. & Florens, L. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Anal. Chem. 82, 2272-81 (2010).
-
(2010)
Anal. Chem.
, vol.82
, pp. 2272-2281
-
-
Zhang, Y.1
Wen, Z.2
Washburn, M.P.3
Florens, L.4
-
45
-
-
42649131100
-
Statistical similarities between transcriptomics and quantitative shotgun proteomics data
-
Pavelka, N. et al. Statistical similarities between transcriptomics and quantitative shotgun proteomics data. Mol. Cell. Proteomics 7, 631-44 (2008).
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 631-644
-
-
Pavelka, N.1
-
46
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57, 289-300 (1995).
-
(1995)
J.R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
47
-
-
33644876912
-
The peptide atlas project
-
Desiere, F. et al. The Peptide Atlas project. Nucleic Acids Res. 34, D655-8 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D655-D658
-
-
Desiere, F.1
|