메뉴 건너뛰기




Volumn 28, Issue , 2015, Pages 150-155

The emergence of commodity-scale genetic manipulation

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENOME; CRISPR CAS SYSTEM; ENTEROBACTERIACEAE; ESCHERICHIA COLI; GENETIC ENGINEERING; GENETIC MANIPULATION; HOMOLOGOUS RECOMBINATION; NEXT GENERATION SEQUENCING; NONHUMAN; REVIEW; STREPTOCOCCUS PYOGENES; SYNTHETIC BIOLOGY; ANIMAL; BIOLOGY; CHEMISTRY; ECONOMICS; GENETICS; HUMAN; PROCEDURES; SYNTHESIS;

EID: 84939645367     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2015.07.009     Document Type: Review
Times cited : (4)

References (44)
  • 1
    • 0000801110 scopus 로고
    • Computers and the theory of statistics: thinking the unthinkable
    • Efron B. Computers and the theory of statistics: thinking the unthinkable. SIAM Rev 1979, 21:460-480.
    • (1979) SIAM Rev , vol.21 , pp. 460-480
    • Efron, B.1
  • 2
    • 0025448521 scopus 로고
    • The strength of weak learnability
    • Schapire R.E. The strength of weak learnability. Mach Learn 1990, 5:197-227.
    • (1990) Mach Learn , vol.5 , pp. 197-227
    • Schapire, R.E.1
  • 3
    • 84873800970 scopus 로고    scopus 로고
    • Genome-scale engineering for systems and synthetic biology
    • Esvelt K.M., Wang H.H. Genome-scale engineering for systems and synthetic biology. Mol Syst Biol 2013, 9:641.
    • (2013) Mol Syst Biol , vol.9 , pp. 641
    • Esvelt, K.M.1    Wang, H.H.2
  • 4
    • 84947598027 scopus 로고    scopus 로고
    • Rapid prototyping of microbial cell factories via genome-scale engineering
    • Si T., Xiao H., Zhao H. Rapid prototyping of microbial cell factories via genome-scale engineering. Biotechnol Adv 2014, 10.1016/j.biotechadv.2014.11.007.
    • (2014) Biotechnol Adv
    • Si, T.1    Xiao, H.2    Zhao, H.3
  • 6
    • 0014002438 scopus 로고
    • Polynucleotide synthesis and the genetic code
    • Khorana H.G., et al. Polynucleotide synthesis and the genetic code. Cold Spring Harb Symp Quant Biol 1966, 31:39-49.
    • (1966) Cold Spring Harb Symp Quant Biol , vol.31 , pp. 39-49
    • Khorana, H.G.1
  • 7
    • 0014932468 scopus 로고
    • Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast
    • Agarwal K.L., et al. Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast. Nature 1970, 227:27-34.
    • (1970) Nature , vol.227 , pp. 27-34
    • Agarwal, K.L.1
  • 8
    • 0016863647 scopus 로고
    • Nucleotide chemistry XX. Phosphite coupling procedure for generating internucleotide links
    • Letsinger R.L., Finnan J.L., Heavner G.A., Lunsford W.B. Nucleotide chemistry XX. Phosphite coupling procedure for generating internucleotide links. J Am Chem Soc 1975, 97:3278-3279.
    • (1975) J Am Chem Soc , vol.97 , pp. 3278-3279
    • Letsinger, R.L.1    Finnan, J.L.2    Heavner, G.A.3    Lunsford, W.B.4
  • 9
    • 49149135789 scopus 로고
    • Deoxynucleoside phosphoramidites-a new class of key intermediates for deoxypolynucleotide synthesis
    • Beaucage S.L., Caruthers M.H. Deoxynucleoside phosphoramidites-a new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedron Lett 1981, 22:1859-1862.
    • (1981) Tetrahedron Lett , vol.22 , pp. 1859-1862
    • Beaucage, S.L.1    Caruthers, M.H.2
  • 10
    • 33845556076 scopus 로고
    • Synthesis of deoxyoligonucleotides on a polymer support
    • Matteucci M.D., Caruthers M.H. Synthesis of deoxyoligonucleotides on a polymer support. J Am Chem Soc 1981, 103:3185-3191.
    • (1981) J Am Chem Soc , vol.103 , pp. 3185-3191
    • Matteucci, M.D.1    Caruthers, M.H.2
  • 11
    • 79955773387 scopus 로고    scopus 로고
    • Parallel on-chip gene synthesis and application to optimization of protein expression
    • Quan J., et al. Parallel on-chip gene synthesis and application to optimization of protein expression. Nat Biotechnol 2011, 29:449-452.
    • (2011) Nat Biotechnol , vol.29 , pp. 449-452
    • Quan, J.1
  • 12
    • 78650021707 scopus 로고    scopus 로고
    • Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
    • Kosuri S., et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat Biotechnol 2010, 28:1295-1299.
    • (2010) Nat Biotechnol , vol.28 , pp. 1295-1299
    • Kosuri, S.1
  • 13
    • 71849119422 scopus 로고    scopus 로고
    • The changing economics of DNA synthesis
    • Carlson R. The changing economics of DNA synthesis. Nat Biotechnol 2009, 27:1091-1094.
    • (2009) Nat Biotechnol , vol.27 , pp. 1091-1094
    • Carlson, R.1
  • 15
    • 0019888362 scopus 로고
    • Bacteriophage P1 site-specific recombination. I. Recombination between loxP sites
    • Sternberg N., Hamilton D. Bacteriophage P1 site-specific recombination. I. Recombination between loxP sites. J Mol Biol 1981, 150:467-486.
    • (1981) J Mol Biol , vol.150 , pp. 467-486
    • Sternberg, N.1    Hamilton, D.2
  • 16
    • 0020526141 scopus 로고
    • Protein of the yeast 2-microns plasmid: expression of a eukaryotic genetic recombination system in Escherichia coli
    • Cox M.M., The F.L.P. protein of the yeast 2-microns plasmid: expression of a eukaryotic genetic recombination system in Escherichia coli. Proc Natl Acad Sci U S A 1983, 80:4223-4227.
    • (1983) Proc Natl Acad Sci U S A , vol.80 , pp. 4223-4227
    • Cox, M.M.1    The, F.L.P.2
  • 17
    • 11144247743 scopus 로고    scopus 로고
    • Accurate multiplex gene synthesis from programmable DNA microchips
    • Tian J., et al. Accurate multiplex gene synthesis from programmable DNA microchips. Nature 2004, 432:1050-1054.
    • (2004) Nature , vol.432 , pp. 1050-1054
    • Tian, J.1
  • 18
    • 67650388609 scopus 로고    scopus 로고
    • Advancing high-throughput gene synthesis technology
    • Tian J., Ma K., Saaem I. Advancing high-throughput gene synthesis technology. Mol Biosyst 2009, 5:714-722.
    • (2009) Mol Biosyst , vol.5 , pp. 714-722
    • Tian, J.1    Ma, K.2    Saaem, I.3
  • 19
    • 4644244121 scopus 로고    scopus 로고
    • Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis
    • Richmond K.E., et al. Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis. Nucleic Acids Res 2004, 32:5011-5018.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5011-5018
    • Richmond, K.E.1
  • 20
    • 0346103663 scopus 로고    scopus 로고
    • Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants
    • Costantino N., Court D.L. Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants. Proc Natl Acad Sci U S A 2003, 100:15748-15753.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 15748-15753
    • Costantino, N.1    Court, D.L.2
  • 21
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang H.H., et al. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1
  • 22
    • 59849119654 scopus 로고    scopus 로고
    • Recombineering: a homologous recombination-based method of genetic engineering
    • Sharan S.K., Thomason L.C., Kuznetsov S.G., Court D.L. Recombineering: a homologous recombination-based method of genetic engineering. Nat Protoc 2009, 4:206-223.
    • (2009) Nat Protoc , vol.4 , pp. 206-223
    • Sharan, S.K.1    Thomason, L.C.2    Kuznetsov, S.G.3    Court, D.L.4
  • 24
    • 0031924072 scopus 로고    scopus 로고
    • Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli
    • Murphy K.C. Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J Bacteriol 1998, 180:2063-2071.
    • (1998) J Bacteriol , vol.180 , pp. 2063-2071
    • Murphy, K.C.1
  • 25
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko K.A., Wanner B.L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 2000, 97:6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 26
    • 84919701495 scopus 로고    scopus 로고
    • Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA
    • Gallagher R.R., Li Z., Lewis A.O., Isaacs F.J. Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA. Nat Protoc 2014, 9:2301-2316.
    • (2014) Nat Protoc , vol.9 , pp. 2301-2316
    • Gallagher, R.R.1    Li, Z.2    Lewis, A.O.3    Isaacs, F.J.4
  • 27
    • 84861963767 scopus 로고    scopus 로고
    • Genome-scale promoter engineering by coselection MAGE
    • Wang H.H., et al. Genome-scale promoter engineering by coselection MAGE. Nat Methods 2012, 9:591-593.
    • (2012) Nat Methods , vol.9 , pp. 591-593
    • Wang, H.H.1
  • 28
    • 84921417685 scopus 로고    scopus 로고
    • Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides
    • Bonde M.T., et al. Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides. ACS Synth Biol 2015, 4:17-22.
    • (2015) ACS Synth Biol , vol.4 , pp. 17-22
    • Bonde, M.T.1
  • 29
    • 84899666828 scopus 로고    scopus 로고
    • A simple and effective method for construction of Escherichia coli strains proficient for genome engineering
    • Ryu Y.S., et al. A simple and effective method for construction of Escherichia coli strains proficient for genome engineering. PLOS ONE 2014, 9:e94266.
    • (2014) PLOS ONE , vol.9 , pp. e94266
    • Ryu, Y.S.1
  • 30
    • 84866050528 scopus 로고    scopus 로고
    • Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection
    • Carr P.A., et al. Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection. Nucleic Acids Res 2012, 10.1093/nar/gks455.
    • (2012) Nucleic Acids Res
    • Carr, P.A.1
  • 31
    • 79960502359 scopus 로고    scopus 로고
    • Precise manipulation of chromosomes in vivo enables genome-wide codon replacement
    • Isaacs F.J., et al. Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science 2011, 333:348-353.
    • (2011) Science , vol.333 , pp. 348-353
    • Isaacs, F.J.1
  • 32
    • 84885791219 scopus 로고    scopus 로고
    • Genomically recoded organisms expand biological functions
    • Lajoie M.J., et al. Genomically recoded organisms expand biological functions. Science 2013, 342:357-360.
    • (2013) Science , vol.342 , pp. 357-360
    • Lajoie, M.J.1
  • 33
    • 84922595374 scopus 로고    scopus 로고
    • Recoded organisms engineered to depend on synthetic amino acids
    • Rovner A.J., et al. Recoded organisms engineered to depend on synthetic amino acids. Nature 2015, 518:89-93.
    • (2015) Nature , vol.518 , pp. 89-93
    • Rovner, A.J.1
  • 34
    • 0037036727 scopus 로고    scopus 로고
    • Addition of p-azido-l-phenylalanine to the genetic code of Escherichia coli
    • Chin J.W., et al. Addition of p-azido-l-phenylalanine to the genetic code of Escherichia coli. J Am Chem Soc 2002, 124:9026-9027.
    • (2002) J Am Chem Soc , vol.124 , pp. 9026-9027
    • Chin, J.W.1
  • 35
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M., et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 36
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi L.S., et al. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 2013, 152:1173-1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1
  • 37
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang W., Bikard D., Cox D., Zhang F., Marraffini L.A. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 2013, 31:233-239.
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 38
    • 84925355124 scopus 로고    scopus 로고
    • Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system
    • Jiang Y., et al. Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl Environ Microbiol 2015, 81:2506-2514. http://aem.asm.org/content/81/7/2506/F2.expansion.html.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 2506-2514
    • Jiang, Y.1
  • 39
    • 84878936806 scopus 로고    scopus 로고
    • CRISPR-mediated adaptive immune systems in bacteria and archaea
    • Sorek R., Lawrence C.M., Wiedenheft B. CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu Rev Biochem 2013, 82:237-266.
    • (2013) Annu Rev Biochem , vol.82 , pp. 237-266
    • Sorek, R.1    Lawrence, C.M.2    Wiedenheft, B.3
  • 40
    • 84876575031 scopus 로고    scopus 로고
    • Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
    • DiCarlo J.E., et al. Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems. Nucleic Acids Res 2013, 10.1093/nar/gkt135.
    • (2013) Nucleic Acids Res
    • DiCarlo, J.E.1
  • 41
    • 84934947770 scopus 로고    scopus 로고
    • High-efficiency multiplex genome editing of streptomyces species using an engineered CRISPR/Cas system
    • Cobb R.E., Wang Y., Zhao H. High-efficiency multiplex genome editing of streptomyces species using an engineered CRISPR/Cas system. ACS Synth Biol 2014, 10.1021/sb500351f.
    • (2014) ACS Synth Biol
    • Cobb, R.E.1    Wang, Y.2    Zhao, H.3
  • 42
    • 84883809403 scopus 로고    scopus 로고
    • Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila
    • Yu Z., et al. Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. Genetics 2013, 10.1534/genetics.113.153825.
    • (2013) Genetics
    • Yu, Z.1
  • 43
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Shan Q., et al. Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotechnol 2013, 31:686-688.
    • (2013) Nat Biotechnol , vol.31 , pp. 686-688
    • Shan, Q.1
  • 44
    • 84908352138 scopus 로고    scopus 로고
    • Genome-scale CRISPR-mediated control of gene repression and activation
    • Gilbert L.A., et al. Genome-scale CRISPR-mediated control of gene repression and activation. Cell 2014, 159:647-661.
    • (2014) Cell , vol.159 , pp. 647-661
    • Gilbert, L.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.