Amplification and assembly of chip-eluted DNA (AACED): A method for high-throughput gene synthesis

Nucleic Acids Research

Volumn 32, Issue 17, 2004, Pages 5011-5018

  Richmond, Kathryn E ^a   Li, Mo Huang ^a   Rodesche, Matthew J ^a   Patel, Madhusudan ^a   Lowe, Aaron M ^a   Kim, Changhan ^b   Chu, Larry L ^a   Venkataramaian, Narasimhar ^b   Flickinger, Shane F ^a   Kaysen, James ^a   Belshaw, Peter J ^a   Sussman, Michael R ^a   Cerrina, Franco ^a,b  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b University of Wisconsin Madison   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; SINGLE STRANDED DNA; OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; BIOTECHNOLOGICAL PRODUCTION; DEVICE; DNA CLEAVAGE; DNA FLANKING REGION; DNA MICROARRAY; DNA SEQUENCE; DNA SYNTHESIS; GENE AMPLIFICATION; GENETIC ANALYSIS; HIGH THROUGHPUT SCREENING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN SYNTHESIS; BIOSYNTHESIS; CHEMISTRY; EVALUATION; GENE; ISOLATION AND PURIFICATION; METHODOLOGY;

GENES; OLIGODEOXYRIBONUCLEOTIDES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION;

EID: 4644244121     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh793     Document Type: Article

References (21)

1. Cello,J., Paul,A.V. and Wimmer,E. (2002) Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural template. Science, 297, 1016-1018.
2. Smith,H.O., Hutchison,C.A.,III, Pfannkoch,C. and Venter,J.C. (2003) Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides. Proc. Natl Acad. Sci. USA, 100, 15440-15445.
3. Pirrung,M.C., Wang,L. and Montague-Smith,M.P. (2001) 3′-nitrophenylpropyloxycarbonyl (NPPOC) protecting groups for high-fidelity automated 5′ → 3′ photochemical DNA synthesis. Org. Lett., 3, 1105-1108.
4. Beier,M. and Hoheisel,J.D. (2000) Production by quantitative photolithographic synthesis of individually quality checked DNA microarrays. Nucleic Acids Res., 28, e11.
5. Albert,T.J., Norton,J., Ott,M., Richmond,T., Nuwaysir,K., Nuwaysir,E.F., Stengele,K.P. and Green,R.D. (2003) Light-directed 5′ → 3′ synthesis of complex oligonueleotide microarrays. Nucleic Acids Res., 31, e35.
6. McGall,G., Barone,A.D., Digglemann,M., Fordor,S.P.A., Gentalen,E., Ngo,N. (1997) The efficiency of light-directed synthesis of DNA arrays on glass substrates. J. Am. Chem. Soc., 119, 5081-5090.
7. Woll,D., Walbert,S., Stengele,K.P., Albert,T.J., Richmond,T., Norton,J., Singer,M. Green,R.D., Pfleiderer,W. and Steiner,U.E. (2004) Triplet-sensitized photodeprotection of oligonucleotides in solution and on microarray chips. Helvetica Chimica Acta, 87, 28-45.
8. Garland,P.B. and Serafinowski,P.J. (2002) Effects of stray light on the fidelity of photodirected oligonucleotide array synthesis. Nucleic Acids Res., 30, e99.
9. Relogio,A., Schwager,C., Richter,A., Ansorge,W. and Valcarcel,J. (2002) Optimization of oligonucleotide-based DNA microarrays. Nucleic Acids Res., 30, e51.
10. LeProust,E., Zhang,H., Yu,P., Zhou,X. and Gao,X. (2001) Characterization of oligodeoxyribonucleotide synthesis on glass plates. Nucleic Acids Res., 29, 2171-2180.
11. Nuwaysir,E.F., Huang,W., Albert,T.J., Singh,J., Nuwaysir,K., Pitas,A., Richmond,T., Gorski,J., Berg,J.P., Ballin,J. et al. (2002) Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res., 12, 1749-1755.
12. Singh-Gasson,S., Green,R.D., Yue,Y., Nelson,C., Blattner,F., Sussman,M.R. and Cerrina,F. (1999) Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol., 17, 974-978.
13. Kim,C., Li,M., Lowe,A., Venkaratamaiah,N., Richmond,K., Kaysen,J., Cerrina,F. (2003) DNA microarrays: an imaging study. J. Vac. Sci. Technol., 21, 2946-2950.
14. Cerrina,F., Blattner,F., Huang,W., Hue,Y., Green,R., Singh-Gasson,S. and Sussman,M. (2002) Microelec. Eng., 41, 61-62.
15. Pon,R.T., Shuyuan,Y.I. (2001) Linker phosphoramidite reagents for oligonucleotide synthesis on underivatized solid-phase supports. Tetrahedron, 42, 8943-8946.
16. Hasan,A., Stengele,K.-P., Giegrich,H., Cornwell,P., Isham,K.R., Sachleben,R.A., Pfleiderer,W. and Foote,R.S. (1997) Photolabile protecting groups for nucleosides: synthesis and photodeprotection rates. Tetrahedron, 53, 4247-4264.
17. Tsuji,Y., Kotachi,S., Huh,K.-T. and Watanabe,Y.J. (1990) Ruthenium-catalyzed dehydrogenative N_heterocyclization: indoles from 2-aminophenethyl alcohols and 2-nitrophenethyl alcohols. J. Org. Chem. 55, 580-584.
18. Zhang,L.K. and Gross,M.L. (2000) Matrix-assisted laser desorption/ionization mass spectrometry methods for oligodeoxynucleotides: improvements in matrix, detection limits, quantification, and sequencing. J. Am. Soc. Mass Spectrom., 11 854-865.
19. Chalmers,F.M. and Curnow,K.M. (2001) Scaling up the ligase chain reaction-based approach to gene synthesis. Biotechniques, 30, 249-252.
20. Prodromou,C. and Pearl,L.H. (1992) Recursive PCR: a novel technique for total gene synthesis. Protein Eng., 5, 827-829.
21. Shchepinov,M.S., Case-Green,S.C. and Southern,E.M. (1997) Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res., 25, 1155-1161.