-
1
-
-
39749140337
-
Transcriptional regulation of the Clostridium cellulolyticum cip-cel operon: a complex mechanism involving a catabolite-responsive element
-
COI: 1:CAS:528:DC%2BD1cXisFOjt7Y%3D, PID: 18156277
-
Abdou L, Boileau C, de Philip P, Pagès S, Fiérobe H-P, Tardif C (2008) Transcriptional regulation of the Clostridium cellulolyticum cip-cel operon: a complex mechanism involving a catabolite-responsive element. J Bacteriol 190:1499–1506. doi:10.1128/jb.01160-07
-
(2008)
J Bacteriol
, vol.190
, pp. 1499-1506
-
-
Abdou, L.1
Boileau, C.2
de Philip, P.3
Pagès, S.4
Fiérobe, H.-P.5
Tardif, C.6
-
2
-
-
84868649467
-
Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration
-
COI: 1:CAS:528:DC%2BC38Xhs1eisrzJ, PID: 22983967
-
Al-Hinai MA, Fast AG, Papoutsakis ET (2012) Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration. Appl Environ Microbiol 78:8112–8121. doi:10.1128/AEM.02214-12
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8112-8121
-
-
Al-Hinai, M.A.1
Fast, A.G.2
Papoutsakis, E.T.3
-
3
-
-
0001441208
-
Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaL1cXlt1Gisg%3D%3D, PID: 16347502
-
Baer SH, Blaschek HP, Smith TL (1987) Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum. Appl Environ Microbiol 53:2854–2861
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 2854-2861
-
-
Baer, S.H.1
Blaschek, H.P.2
Smith, T.L.3
-
4
-
-
0022357670
-
Effects of butanol on Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaL28Xjt1em, PID: 2868690
-
Bowles LK, Ellefson WL (1985) Effects of butanol on Clostridium acetobutylicum. Appl Environ Microbiol 50:1165–1170
-
(1985)
Appl Environ Microbiol
, vol.50
, pp. 1165-1170
-
-
Bowles, L.K.1
Ellefson, W.L.2
-
5
-
-
0026665031
-
Structural characterization and corepressor binding of the Escherichia coli purine repressor
-
COI: 1:CAS:528:DyaK38XmtVOnur4%3D, PID: 1400170
-
Choi KY, Zalkin H (1992) Structural characterization and corepressor binding of the Escherichia coli purine repressor. J Bacteriol 174:6207–6214
-
(1992)
J Bacteriol
, vol.174
, pp. 6207-6214
-
-
Choi, K.Y.1
Zalkin, H.2
-
6
-
-
0029745668
-
Catabolite repression mediated by the catabolite control protein CcpA in Staphylococcus xylosus
-
COI: 1:STN:280:DyaK2s%2Fjt1Wnsw%3D%3D, PID: 8878037
-
Egeter O, Brückner R (1996) Catabolite repression mediated by the catabolite control protein CcpA in Staphylococcus xylosus. Mol Microbiol 21:739–749. doi:10.1046/j.1365-2958.1996.301398.x
-
(1996)
Mol Microbiol
, vol.21
, pp. 739-749
-
-
Egeter, O.1
Brückner, R.2
-
7
-
-
45249103536
-
A co-fermentation strategy to consume sugar mixtures effectively
-
PID: 18304345
-
Eiteman MA, Lee SA, Altman E (2008) A co-fermentation strategy to consume sugar mixtures effectively. J Biol Eng 2:3–3. doi:10.1186/1754-1611-2-3
-
(2008)
J Biol Eng
, vol.2
, pp. 3
-
-
Eiteman, M.A.1
Lee, S.A.2
Altman, E.3
-
8
-
-
80052440814
-
Comparison and calibration of different reporters for quantitative analysis of gene expression
-
COI: 1:STN:280:DC%2BC3MjivFyrsg%3D%3D, PID: 21806921
-
Garcia Hernan G, Lee Heun J, Boedicker James Q, Phillips R (2011) Comparison and calibration of different reporters for quantitative analysis of gene expression. Biophys J 101:535–544. doi:10.1016/j.bpj.2011.06.026
-
(2011)
Biophys J
, vol.101
, pp. 535-544
-
-
Garcia Hernan, G.1
Lee Heun, J.2
Boedicker James, Q.3
Phillips, R.4
-
9
-
-
47549110972
-
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
-
PID: 18628769
-
Gorke B, Stulke J (2008) Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol 6:613–624. doi:10.1038/nrmicro1932
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 613-624
-
-
Gorke, B.1
Stulke, J.2
-
10
-
-
78149464840
-
Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of d-glucose and d-xylose
-
COI: 1:CAS:528:DC%2BC3cXhsVahtbzP, PID: 20883732
-
Grimmler C, Held C, Liebl W, Ehrenreich A (2010) Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of d-glucose and d-xylose. J Biotechnol 150:315–323. doi:10.1016/j.jbiotec.2010.09.938
-
(2010)
J Biotechnol
, vol.150
, pp. 315-323
-
-
Grimmler, C.1
Held, C.2
Liebl, W.3
Ehrenreich, A.4
-
11
-
-
0027377245
-
Regulation of the Bacillus subtilis acetate kinase gene by CcpA
-
COI: 1:CAS:528:DyaK2cXntVGqsQ%3D%3D, PID: 8226682
-
Grundy FJ, Waters DA, Allen SH, Henkin TM (1993) Regulation of the Bacillus subtilis acetate kinase gene by CcpA. J Bacteriol 175:7348–7355
-
(1993)
J Bacteriol
, vol.175
, pp. 7348-7355
-
-
Grundy, F.J.1
Waters, D.A.2
Allen, S.H.3
Henkin, T.M.4
-
12
-
-
70249106057
-
Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli
-
COI: 1:CAS:528:DC%2BD1MXhtFGksLrP, PID: 19695296
-
Gu Y, Li J, Zhang L, Chen J, Niu L, Yang Y, Yang S, Jiang W (2009) Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli. J Biotechnol 143:284–287. doi:10.1016/j.jbiotec.2009.08.009
-
(2009)
J Biotechnol
, vol.143
, pp. 284-287
-
-
Gu, Y.1
Li, J.2
Zhang, L.3
Chen, J.4
Niu, L.5
Yang, Y.6
Yang, S.7
Jiang, W.8
-
13
-
-
79251640164
-
Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018
-
Hu S, Zheng H, Gu Y, Zhao J, Zhang W, Yang Y, Wang S, Zhao G, Yang S, Jiang W (2011) Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018. BMC Genomics 12 doi:10.1186/1471-2164-12-93
-
(2011)
BMC Genomics
, pp. 12
-
-
Hu, S.1
Zheng, H.2
Gu, Y.3
Zhao, J.4
Zhang, W.5
Yang, Y.6
Wang, S.7
Zhao, G.8
Yang, S.9
Jiang, W.10
-
14
-
-
0028907495
-
Catabolite repression in Bacillus subtilis: a global regulatory mechanism for the gram-positive bacteria?
-
COI: 1:CAS:528:DyaK2MXjvFejtr4%3D, PID: 7540244
-
Hueck CJ, Hillen W (1995) Catabolite repression in Bacillus subtilis: a global regulatory mechanism for the gram-positive bacteria? Mol Microbiol 15:395–401. doi:10.1111/j.1365-2958.1995.tb02252.x
-
(1995)
Mol Microbiol
, vol.15
, pp. 395-401
-
-
Hueck, C.J.1
Hillen, W.2
-
15
-
-
0028086366
-
Analysis of a cis-active sequence mediating catabolite repression in gram-positive bacteria
-
COI: 1:CAS:528:DyaK2MXitFWqt74%3D, PID: 7855437
-
Hueck CJ, Hillen W, Saier MH Jr (1994) Analysis of a cis-active sequence mediating catabolite repression in gram-positive bacteria. Res Microbiol 145:503–518. doi:10.1016/0923-2508(94)90028-
-
(1994)
Res Microbiol
, vol.145
, pp. 503-518
-
-
Hueck, C.J.1
Hillen, W.2
Saier, M.H.3
-
16
-
-
84866770070
-
Butanol production from renewable biomass by clostridia
-
COI: 1:CAS:528:DC%2BC38Xhtl2qt7vK, PID: 22939593
-
Jang Y-S, Malaviya A, Cho C, Lee J, Lee SY (2012) Butanol production from renewable biomass by clostridia. Bioresour Technol 123:653–663. doi:10.1016/j.biortech.2012.07.104
-
(2012)
Bioresour Technol
, vol.123
, pp. 653-663
-
-
Jang, Y.-S.1
Malaviya, A.2
Cho, C.3
Lee, J.4
Lee, S.Y.5
-
17
-
-
70249148517
-
Phosphoenolpyruvate-dependent phosphorylation of sucrose by Clostridium tyrobutyricum ZJU 8235: evidence for the phosphotransferase transport system
-
COI: 1:CAS:528:DC%2BD1MXhtFGltrfI, PID: 19726178
-
Jiang L, Cai J, Wang J, Liang S, Xu Z, Yang S-T (2010) Phosphoenolpyruvate-dependent phosphorylation of sucrose by Clostridium tyrobutyricum ZJU 8235: evidence for the phosphotransferase transport system. Bioresour Technol 101:304–309. doi:10.1016/j.biortech.2009.08.024
-
(2010)
Bioresour Technol
, vol.101
, pp. 304-309
-
-
Jiang, L.1
Cai, J.2
Wang, J.3
Liang, S.4
Xu, Z.5
Yang, S.-T.6
-
18
-
-
84893019174
-
Combined overexpression of genes involved in pentose phosphate pathway enables enhanced d-xylose utilization by Clostridium acetobutylicum
-
COI: 1:CAS:528:DC%2BC2cXis1CqsLY%3D, PID: 24412407
-
Jin L, Zhang H, Chen L, Yang C, Yang S, Jiang W, Gu Y (2014) Combined overexpression of genes involved in pentose phosphate pathway enables enhanced d-xylose utilization by Clostridium acetobutylicum. J Biotechnol 173:7–9. doi:10.1016/j.jbiotec.2014.01.002
-
(2014)
J Biotechnol
, vol.173
, pp. 7-9
-
-
Jin, L.1
Zhang, H.2
Chen, L.3
Yang, C.4
Yang, S.5
Jiang, W.6
Gu, Y.7
-
19
-
-
0030798006
-
Contacts between Bacillus subtilis catabolite regulatory protein CcpA and amyO target site
-
Kim J-H, Chambliss GH (1997) Contacts between Bacillus subtilis catabolite regulatory protein CcpA and amyO target site. Nucleic Acids Res 25:3490–3496. doi:10.1093/nar/25.17.3490
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3490-3496
-
-
Kim, J.-H.1
Chambliss, G.H.2
-
20
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
COI: 1:CAS:528:DyaK28XhsVSrtbw%3D, PID: 8638105
-
Lewis M, Chang G, Horton NC, Kercher MA, Pace HC, Schumacher MA, Brennan RG, Lu P (1996) Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science 271:1247–1254. doi:10.1126/science.271.5253.1247
-
(1996)
Science
, vol.271
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
21
-
-
84885188222
-
Improvement of solvent production from xylose mother liquor by engineering the xylose metabolic pathway in Clostridium acetobutylicum EA 2018
-
COI: 1:CAS:528:DC%2BC3sXht1yhs77K, PID: 23949683
-
Li Z, Xiao H, Jiang W, Jiang Y, Yang S (2013) Improvement of solvent production from xylose mother liquor by engineering the xylose metabolic pathway in Clostridium acetobutylicum EA 2018. Appl Biochem Biotechnol 171:555–568. doi:10.1007/s12010-013-0414-9
-
(2013)
Appl Biochem Biotechnol
, vol.171
, pp. 555-568
-
-
Li, Z.1
Xiao, H.2
Jiang, W.3
Jiang, Y.4
Yang, S.5
-
22
-
-
33947544962
-
Structure of the transcription regulator CcpA from Lactococcus lactis
-
COI: 1:CAS:528:DC%2BD2sXjtFCqtbY%3D
-
Loll B, Kowalczyk M, Alings C, Chieduch A, Bardowski J, Saenger W, Biesiadka J (2007) Structure of the transcription regulator CcpA from Lactococcus lactis. Acta Crystallogr Sect D: Biol Crystallogr 63:431–436. doi:10.1107/S0907444907000546
-
(2007)
Acta Crystallogr Sect D: Biol Crystallogr
, vol.63
, pp. 431-436
-
-
Loll, B.1
Kowalczyk, M.2
Alings, C.3
Chieduch, A.4
Bardowski, J.5
Saenger, W.6
Biesiadka, J.7
-
23
-
-
80052625837
-
Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production
-
PID: 21377350
-
Lütke-Eversloh T, Bahl H (2011) Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production. Curr Opin Biotechnol 22:634–647. doi:10.1016/j.copbio.2011.01.011
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 634-647
-
-
Lütke-Eversloh, T.1
Bahl, H.2
-
24
-
-
0037133381
-
Mutational analysis of the bglH catabolite-responsive element (cre) in Lactobacillus plantarum
-
COI: 1:CAS:528:DC%2BD38XisV2ltbk%3D, PID: 11934508
-
Marasco R, Muscariello L, Rigano M, Sacco M (2002) Mutational analysis of the bglH catabolite-responsive element (cre) in Lactobacillus plantarum. FEMS Microbiol Lett 208:143–146. doi:10.1111/j.1574-6968.2002.tb11074.x
-
(2002)
FEMS Microbiol Lett
, vol.208
, pp. 143-146
-
-
Marasco, R.1
Muscariello, L.2
Rigano, M.3
Sacco, M.4
-
25
-
-
84866945271
-
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis
-
COI: 1:CAS:528:DC%2BC38XhslalsrjK, PID: 22900538
-
Marciniak B, Pabijaniak M, de Jong A, Duhring R, Seidel G, Hillen W, Kuipers O (2012) High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis. BMC Genomics 13:401. doi:10.1186/1471-2164-13-401
-
(2012)
BMC Genomics
, vol.13
, pp. 401
-
-
Marciniak, B.1
Pabijaniak, M.2
de Jong, A.3
Duhring, R.4
Seidel, G.5
Hillen, W.6
Kuipers, O.7
-
26
-
-
0027477171
-
In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824
-
COI: 1:CAS:528:DyaK3sXktVCkurY%3D, PID: 8386500
-
Mermelstein L, Papoutsakis E (1993) In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 59:1077–1081
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1077-1081
-
-
Mermelstein, L.1
Papoutsakis, E.2
-
27
-
-
0034159917
-
Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis
-
COI: 1:CAS:528:DC%2BD3cXitVarsr4%3D, PID: 10666464
-
Miwa Y, Nakata A, Ogiwara A, Yamamoto M, Fujita Y (2000) Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Res 28:1206–1210. doi:10.1093/nar/28.5.1206
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1206-1210
-
-
Miwa, Y.1
Nakata, A.2
Ogiwara, A.3
Yamamoto, M.4
Fujita, Y.5
-
28
-
-
84886394446
-
Efficient butanol production without carbon catabolite repression from mixed sugars with Clostridium saccharoperbutylacetonicum N1-4
-
COI: 1:CAS:528:DC%2BC3sXhtVehtr3E, PID: 23809630
-
Noguchi T, Tashiro Y, Yoshida T, Zheng J, Sakai K, Sonomoto K (2013) Efficient butanol production without carbon catabolite repression from mixed sugars with Clostridium saccharoperbutylacetonicum N1-4. J Biosci Bioeng 116:716–721. doi:10.1016/j.jbiosc.2013.05.030
-
(2013)
J Biosci Bioeng
, vol.116
, pp. 716-721
-
-
Noguchi, T.1
Tashiro, Y.2
Yoshida, T.3
Zheng, J.4
Sakai, K.5
Sonomoto, K.6
-
29
-
-
0026077834
-
Metabolic engineering of Klebsiella oxytoca M5A1 for ethanol production from xylose and glucose
-
COI: 1:CAS:528:DyaK38XhvFOjtg%3D%3D, PID: 1746941
-
Ohta K, Beall DS, Mejia JP, Shanmugam KT, Ingram LO (1991) Metabolic engineering of Klebsiella oxytoca M5A1 for ethanol production from xylose and glucose. Appl Environ Microbiol 57:2810–2815
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 2810-2815
-
-
Ohta, K.1
Beall, D.S.2
Mejia, J.P.3
Shanmugam, K.T.4
Ingram, L.O.5
-
30
-
-
0021957625
-
Regulation and butanol inhibition of d-xylose and d-glucose uptake in Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaL2MXktVCqtLs%3D, PID: 4004220
-
Ounine K, Petitdemange H, Raval G, Gay R (1985) Regulation and butanol inhibition of d-xylose and d-glucose uptake in Clostridium acetobutylicum. Appl Environ Microbiol 49:874–878
-
(1985)
Appl Environ Microbiol
, vol.49
, pp. 874-878
-
-
Ounine, K.1
Petitdemange, H.2
Raval, G.3
Gay, R.4
-
31
-
-
3042565140
-
Transcriptional organization of the Clostridium acetobutylicum genome
-
COI: 1:CAS:528:DC%2BD2cXjt1ejsrc%3D, PID: 15060177
-
Paredes CJ, Rigoutsos I, Papoutsakis ET (2004) Transcriptional organization of the Clostridium acetobutylicum genome. Nucleic Acids Res 32:1973–1981. doi:10.1093/nar/gkh509
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1973-1981
-
-
Paredes, C.J.1
Rigoutsos, I.2
Papoutsakis, E.T.3
-
32
-
-
0031935564
-
Characterization of glucose-specific catabolite repression-resistant mutants of Bacillus subtilis: identification of a novel hexose:H+ symporter
-
COI: 1:CAS:528:DyaK1cXmsFejtg%3D%3D, PID: 9457850
-
Paulsen IT, Chauvaux S, Choi P, Saier MH (1998) Characterization of glucose-specific catabolite repression-resistant mutants of Bacillus subtilis: identification of a novel hexose:H+ symporter. J Bacteriol 180:498–504
-
(1998)
J Bacteriol
, vol.180
, pp. 498-504
-
-
Paulsen, I.T.1
Chauvaux, S.2
Choi, P.3
Saier, M.H.4
-
33
-
-
84900563461
-
Technical guide for genetic advancement of underdeveloped and intractable Clostridium
-
COI: 1:CAS:528:DC%2BC2cXnsVWqtr4%3D, PID: 24768687
-
Pyne ME, Bruder M, Moo-Young M, Chung DA, Chou CP (2014a) Technical guide for genetic advancement of underdeveloped and intractable Clostridium. Biotechnol Adv 32:623–641. doi:10.1016/j.biotechadv.2014.04.003
-
(2014)
Biotechnol Adv
, vol.32
, pp. 623-641
-
-
Pyne, M.E.1
Bruder, M.2
Moo-Young, M.3
Chung, D.A.4
Chou, C.P.5
-
34
-
-
84875878853
-
Development of an electrotransformation protocol for genetic manipulation of Clostridium pasteurianum
-
COI: 1:CAS:528:DC%2BC3sXptFyiu74%3D, PID: 23570573
-
Pyne ME, Moo-Young M, Chung DA, Chou CP (2013) Development of an electrotransformation protocol for genetic manipulation of Clostridium pasteurianum. Biotechnol Biofuels 6:50
-
(2013)
Biotechnol Biofuels
, vol.6
, pp. 50
-
-
Pyne, M.E.1
Moo-Young, M.2
Chung, D.A.3
Chou, C.P.4
-
35
-
-
84988876848
-
Expansion of the genetic toolkit for metabolic engineering of Clostridium pasteurianum: chromosomal gene disruption of the endogenous CpaAI restriction enzyme
-
PID: 25431621
-
Pyne ME, Moo-Young M, Chung DA, Chou CP (2014b) Expansion of the genetic toolkit for metabolic engineering of Clostridium pasteurianum: chromosomal gene disruption of the endogenous CpaAI restriction enzyme. Biotechnol Biofuels 7:163
-
(2014)
Biotechnol Biofuels
, vol.7
, pp. 163
-
-
Pyne, M.E.1
Moo-Young, M.2
Chung, D.A.3
Chou, C.P.4
-
36
-
-
77955660471
-
Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum
-
COI: 1:CAS:528:DC%2BC3cXhtVeht7%2FO, PID: 20478391
-
Ren C, Gu Y, Hu S, Wu Y, Wang P, Yang Y, Yang C, Yang S, Jiang W (2010) Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum. Metab Eng 12:446–454. doi:10.1016/j.ymben.2010.05.002
-
(2010)
Metab Eng
, vol.12
, pp. 446-454
-
-
Ren, C.1
Gu, Y.2
Hu, S.3
Wu, Y.4
Wang, P.5
Yang, Y.6
Yang, C.7
Yang, S.8
Jiang, W.9
-
37
-
-
84864347429
-
Pleiotropic functions of catabolite control protein CcpA in butanol-producing Clostridium acetobutylicum
-
COI: 1:CAS:528:DC%2BC3sXmtVeqt7k%3D, PID: 22846451
-
Ren C, Gu Y, Wu Y, Zhang W, Yang C, Yang S, Jiang W (2012) Pleiotropic functions of catabolite control protein CcpA in butanol-producing Clostridium acetobutylicum. BMC Genomics 13:349. doi:10.1186/1471-2164-13-349
-
(2012)
BMC Genomics
, vol.13
, pp. 349
-
-
Ren, C.1
Gu, Y.2
Wu, Y.3
Zhang, W.4
Yang, C.5
Yang, S.6
Jiang, W.7
-
38
-
-
0035910178
-
Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
-
COI: 1:CAS:528:DC%2BD3MXpt1alsL4%3D, PID: 11750820
-
Rodionov DA, Mironov AA, Gelfand MS (2001) Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol Lett 205:305–314. doi:10.1111/j.1574-6968.2001.tb10965.x
-
(2001)
FEMS Microbiol Lett
, vol.205
, pp. 305-314
-
-
Rodionov, D.A.1
Mironov, A.A.2
Gelfand, M.S.3
-
39
-
-
0342687610
-
A perfectly symmetric lac operator binds the lac repressor very tightly
-
COI: 1:CAS:528:DyaL2cXmt1Kitg%3D%3D, PID: 6316325
-
Sadler JR, Sasmor H, Betz JL (1983) A perfectly symmetric lac operator binds the lac repressor very tightly. Proc Natl Acad Sci U S A 80:6785–6789
-
(1983)
Proc Natl Acad Sci U S A
, vol.80
, pp. 6785-6789
-
-
Sadler, J.R.1
Sasmor, H.2
Betz, J.L.3
-
41
-
-
4544356004
-
Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P
-
COI: 1:CAS:528:DC%2BD2cXnvFehtb0%3D, PID: 15369672
-
Schumacher M, Allen G, Diel M, Seidel G, Hillen W, Brennan R (2004) Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P. Cell 118:731–741
-
(2004)
Cell
, vol.118
, pp. 731-741
-
-
Schumacher, M.1
Allen, G.2
Diel, M.3
Seidel, G.4
Hillen, W.5
Brennan, R.6
-
42
-
-
0028173030
-
Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices
-
COI: 1:CAS:528:DyaK2MXitVGgsLw%3D, PID: 7973627
-
Schumacher MA, Choi KY, Zalkin H, Brennan RG (1994) Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices. Science 266:763–770. doi:10.1126/science.7973627
-
(1994)
Science
, vol.266
, pp. 763-770
-
-
Schumacher, M.A.1
Choi, K.Y.2
Zalkin, H.3
Brennan, R.G.4
-
43
-
-
33646588334
-
Phosphoprotein Crh-Ser46-P displays altered binding to CcpA to effect carbon catabolite regulation
-
COI: 1:CAS:528:DC%2BD28XhvFOgtr0%3D, PID: 16316990
-
Schumacher MA, Seidel G, Hillen W, Brennan RG (2006) Phosphoprotein Crh-Ser46-P displays altered binding to CcpA to effect carbon catabolite regulation. J Biol Chem 281:6793–6800. doi:10.1074/jbc.M509977200
-
(2006)
J Biol Chem
, vol.281
, pp. 6793-6800
-
-
Schumacher, M.A.1
Seidel, G.2
Hillen, W.3
Brennan, R.G.4
-
44
-
-
34147143867
-
Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors glucose 6-phosphate and fructose 1,6-bisphosphate
-
COI: 1:CAS:528:DC%2BD2sXksFaiu70%3D, PID: 17376479
-
Schumacher MA, Seidel G, Hillen W, Brennan RG (2007) Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors glucose 6-phosphate and fructose 1,6-bisphosphate. J Mol Biol 368:1042–1050. doi:10.1016/j.jmb.2007.02.054
-
(2007)
J Mol Biol
, vol.368
, pp. 1042-1050
-
-
Schumacher, M.A.1
Seidel, G.2
Hillen, W.3
Brennan, R.G.4
-
45
-
-
79954607096
-
Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators
-
COI: 1:CAS:528:DC%2BC3MXkvFagu7w%3D, PID: 21106498
-
Schumacher MA, Sprehe M, Bartholomae M, Hillen W, Brennan RG (2011) Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators. Nucleic Acids Res 39:2931–2942. doi:10.1093/nar/gkq1177
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2931-2942
-
-
Schumacher, M.A.1
Sprehe, M.2
Bartholomae, M.3
Hillen, W.4
Brennan, R.G.5
-
46
-
-
63749116038
-
Allostery in the LacI/GalR family: variations on a theme
-
COI: 1:CAS:528:DC%2BD1MXksVaiu7c%3D, PID: 19269243
-
Swint-Kruse L, Matthews KS (2009) Allostery in the LacI/GalR family: variations on a theme. Curr Opin Microbiol 12:129–137. doi:10.1016/j.mib.2009.01.009
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 129-137
-
-
Swint-Kruse, L.1
Matthews, K.S.2
-
47
-
-
0344197722
-
Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824
-
COI: 1:CAS:528:DC%2BD3sXosFWqsLs%3D, PID: 14593248
-
Tangney M, Galinier A, Deutscher J, Mitchell WJ (2003) Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824. J Mol Microbiol Biotechnol 6:6–11. doi:10.1159/000073403
-
(2003)
J Mol Microbiol Biotechnol
, vol.6
, pp. 6-11
-
-
Tangney, M.1
Galinier, A.2
Deutscher, J.3
Mitchell, W.J.4
-
48
-
-
0345633540
-
Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis
-
COI: 1:CAS:528:DyaK1MXnsFSrur0%3D, PID: 10559165
-
Tobisch S, Zühlke D, Bernhardt J, Stülke J, Hecker M (1999) Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis. J Bacteriol 181:6996–7004
-
(1999)
J Bacteriol
, vol.181
, pp. 6996-7004
-
-
Tobisch, S.1
Zühlke, D.2
Bernhardt, J.3
Stülke, J.4
Hecker, M.5
-
49
-
-
20344400380
-
Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA
-
COI: 1:CAS:528:DC%2BD2MXltFans7c%3D, PID: 15916606
-
Tojo S, Satomura T, Morisaki K, Deutscher J, Hirooka K, Fujita Y (2005) Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA. Mol Microbiol 56:1560–1573
-
(2005)
Mol Microbiol
, vol.56
, pp. 1560-1573
-
-
Tojo, S.1
Satomura, T.2
Morisaki, K.3
Deutscher, J.4
Hirooka, K.5
Fujita, Y.6
-
50
-
-
84862010951
-
Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications
-
COI: 1:CAS:528:DC%2BC38Xot12htrg%3D, PID: 22079352
-
Tracy BP, Jones SW, Fast AG, Indurthi DC, Papoutsakis ET (2012) Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications. Curr Opin Biotechnol 23:364–381. doi:10.1016/j.copbio.2011.10.008
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 364-381
-
-
Tracy, B.P.1
Jones, S.W.2
Fast, A.G.3
Indurthi, D.C.4
Papoutsakis, E.T.5
-
51
-
-
0032876348
-
Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824
-
COI: 1:CAS:528:DyaK1MXlvFeqtrk%3D, PID: 10473377
-
Tummala SB, Welker NE, Papoutsakis ET (1999) Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 65:3793–3799
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3793-3799
-
-
Tummala, S.B.1
Welker, N.E.2
Papoutsakis, E.T.3
-
52
-
-
3843055670
-
The CcpA protein is necessary for efficient sporulation and enterotoxin gene (cpe) regulation in Clostridium perfringens
-
COI: 1:CAS:528:DC%2BD2cXmvVKhtLY%3D, PID: 15292123
-
Varga J, Stirewalt VL, Melville SB (2004) The CcpA protein is necessary for efficient sporulation and enterotoxin gene (cpe) regulation in Clostridium perfringens. J Bacteriol 186:5221–5229. doi:10.1128/jb.186.16.5221-5229.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 5221-5229
-
-
Varga, J.1
Stirewalt, V.L.2
Melville, S.B.3
-
53
-
-
0348109341
-
CcpA-dependent carbon catabolite repression in bacteria
-
COI: 1:CAS:528:DC%2BD2cXmt1Srtw%3D%3D, PID: 14665673
-
Warner JB, Lolkema JS (2003) CcpA-dependent carbon catabolite repression in bacteria. Microbiol Mol Biol Rev 67:475–490. doi:10.1128/mmbr.67.4.475-490.2003
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 475-490
-
-
Warner, J.B.1
Lolkema, J.S.2
-
54
-
-
0025071837
-
Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis
-
COI: 1:CAS:528:DyaK3cXlt1Ogtb4%3D, PID: 2117276
-
Weickert MJ, Chambliss GH (1990) Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis. Proc Natl Acad Sci U S A 87:6238–6242. doi:10.1073/pnas.87.16.6238
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 6238-6242
-
-
Weickert, M.J.1
Chambliss, G.H.2
-
55
-
-
84922387175
-
Molecular modulation of pleiotropic regulator CcpA for glucose and xylose coutilization by solvent-producing Clostridium acetobutylicum
-
COI: 1:CAS:528:DC%2BC2MXitVCltr0%3D, PID: 25637046
-
Wu Y, Yang Y, Ren C, Yang C, Yang S, Gu Y, Jiang W (2015) Molecular modulation of pleiotropic regulator CcpA for glucose and xylose coutilization by solvent-producing Clostridium acetobutylicum. Metab Eng 28:169–179. doi:10.1016/j.ymben.2015.01.006
-
(2015)
Metab Eng
, vol.28
, pp. 169-179
-
-
Wu, Y.1
Yang, Y.2
Ren, C.3
Yang, C.4
Yang, S.5
Gu, Y.6
Jiang, W.7
-
56
-
-
83055184898
-
Confirmation and elimination of xylose metabolism bottlenecks in glucose phosphoenolpyruvate-dependent phosphotransferase system-deficient Clostridium acetobutylicum for simultaneous utilization of glucose, xylose, and arabinose
-
COI: 1:CAS:528:DC%2BC3MXhs1GqtrnJ, PID: 21926197
-
Xiao H, Gu Y, Ning Y, Yang Y, Mitchell WJ, Jiang W, Yang S (2011) Confirmation and elimination of xylose metabolism bottlenecks in glucose phosphoenolpyruvate-dependent phosphotransferase system-deficient Clostridium acetobutylicum for simultaneous utilization of glucose, xylose, and arabinose. Appl Environ Microbiol 77:7886–7895. doi:10.1128/aem.00644-11
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7886-7895
-
-
Xiao, H.1
Gu, Y.2
Ning, Y.3
Yang, Y.4
Mitchell, W.J.5
Jiang, W.6
Yang, S.7
-
57
-
-
84865613048
-
Metabolic engineering of d-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid
-
COI: 1:CAS:528:DC%2BC38XptFagtLc%3D, PID: 22677452
-
Xiao H, Li Z, Jiang Y, Yang Y, Jiang W, Gu Y, Yang S (2012) Metabolic engineering of d-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid. Metab Eng 14:569–578. doi:10.1016/j.ymben.2012.05.003
-
(2012)
Metab Eng
, vol.14
, pp. 569-578
-
-
Xiao, H.1
Li, Z.2
Jiang, Y.3
Yang, Y.4
Jiang, W.5
Gu, Y.6
Yang, S.7
-
58
-
-
0020511150
-
Fed-batch approach to production of 2,3-butanediol by Klebsiella pneumoniae grown on high substrate concentrations
-
COI: 1:CAS:528:DyaL3sXltlyitr8%3D, PID: 6357080
-
Yu EK, Saddler JN (1983) Fed-batch approach to production of 2,3-butanediol by Klebsiella pneumoniae grown on high substrate concentrations. Appl Environ Microbiol 46:630–635
-
(1983)
Appl Environ Microbiol
, vol.46
, pp. 630-635
-
-
Yu, E.K.1
Saddler, J.N.2
-
59
-
-
33947425225
-
Analysis of the mechanism and regulation of lactose transport and metabolism in Clostridium acetobutylicum ATCC 824
-
PID: 17209069
-
Yu Y, Tangney M, Aass HC, Mitchell WJ (2007) Analysis of the mechanism and regulation of lactose transport and metabolism in Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 73:1842–1850. doi:10.1128/aem.02082-06
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1842-1850
-
-
Yu, Y.1
Tangney, M.2
Aass, H.C.3
Mitchell, W.J.4
-
60
-
-
11144320832
-
Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum
-
COI: 1:CAS:528:DC%2BD2MXmsFal, PID: 15601693
-
Zhang Y-HP, Lynd LR (2005) Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum. J Bacteriol 187:99–106. doi:10.1128/jb.187.1.99-106.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 99-106
-
-
Zhang, Y.-H.P.1
Lynd, L.R.2
|