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Volumn 13, Issue 1, 2012, Pages

High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis

Author keywords

Catabolite responsive elements (cre) affinity; CcpA; Cre box motif

Indexed keywords

CATABOLITE CONTROL PROTEIN A; TRANSCRIPTOME;

EID: 84866945271     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-401     Document Type: Article
Times cited : (59)

References (63)
  • 1
    • 65249173472 scopus 로고    scopus 로고
    • Carbon catabolite control of the metabolic network in Bacillus subtilis
    • 10.1271/bbb.80479, 19202299
    • Fujita Y. Carbon catabolite control of the metabolic network in Bacillus subtilis. Biosci Biotechnol Biochem 2009, 73:245-259. 10.1271/bbb.80479, 19202299.
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 245-259
    • Fujita, Y.1
  • 2
    • 0026033650 scopus 로고
    • Catabolite repression of α amylase gene expression in Bacillus subtilis involves a trans-acting gene product homologous to the Escherichia coli lacl and galR repressors
    • 10.1111/j.1365-2958.1991.tb00728.x, 1904524
    • Henkin TM, Grundy FJ, Nicholson WL, Chambliss GH. Catabolite repression of α amylase gene expression in Bacillus subtilis involves a trans-acting gene product homologous to the Escherichia coli lacl and galR repressors. Mol Microbiol 1991, 5:575-584. 10.1111/j.1365-2958.1991.tb00728.x, 1904524.
    • (1991) Mol Microbiol , vol.5 , pp. 575-584
    • Henkin, T.M.1    Grundy, F.J.2    Nicholson, W.L.3    Chambliss, G.H.4
  • 3
    • 36248971737 scopus 로고    scopus 로고
    • Control of key metabolic intersections in Bacillus subtilis
    • 10.1038/nrmicro1772, 17982469
    • Sonenshein AL. Control of key metabolic intersections in Bacillus subtilis. Nat Rev Microbiol 2007, 5:917-927. 10.1038/nrmicro1772, 17982469.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 917-927
    • Sonenshein, A.L.1
  • 4
    • 0028099341 scopus 로고
    • Possible function and some properties of the CcpA protein of Bacillus subtilis
    • 10.1099/00221287-140-10-2567, 8000527
    • Miwa Y, Saikawa M, Fujita Y. Possible function and some properties of the CcpA protein of Bacillus subtilis. Microbiology 1994, 140:2567-2575. 10.1099/00221287-140-10-2567, 8000527.
    • (1994) Microbiology , vol.140 , pp. 2567-2575
    • Miwa, Y.1    Saikawa, M.2    Fujita, Y.3
  • 5
    • 4544356004 scopus 로고    scopus 로고
    • Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P
    • 10.1016/j.cell.2004.08.027, 15369672
    • Schumacher MA, Allen GS, Diel M, Seidel G, Hillen W, Brennan RG. Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P. Cell 2004, 118:731-741. 10.1016/j.cell.2004.08.027, 15369672.
    • (2004) Cell , vol.118 , pp. 731-741
    • Schumacher, M.A.1    Allen, G.S.2    Diel, M.3    Seidel, G.4    Hillen, W.5    Brennan, R.G.6
  • 6
    • 0028364161 scopus 로고
    • Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis
    • 205505, 8195089
    • Deutscher J, Reizer J, Fischer C, Galinier A, Saier MH, Steinmetz M. Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis. J Bacteriol 1994, 176:3336-3344. 205505, 8195089.
    • (1994) J Bacteriol , vol.176 , pp. 3336-3344
    • Deutscher, J.1    Reizer, J.2    Fischer, C.3    Galinier, A.4    Saier, M.H.5    Steinmetz, M.6
  • 7
    • 0028827880 scopus 로고
    • Specific recognition of the Bacillus subtilis gntcis-acting catabolite-responsive element by a protein complex formed between CcpA and seryl-phosphorylated HPr
    • 10.1111/j.1365-2958.1995.mmi_17050953.x, 8596444
    • Fujita Y, Miwa Y, Galinier A, Deutscher J. Specific recognition of the Bacillus subtilis gntcis-acting catabolite-responsive element by a protein complex formed between CcpA and seryl-phosphorylated HPr. Mol Microbiol 1995, 17:953-960. 10.1111/j.1365-2958.1995.mmi_17050953.x, 8596444.
    • (1995) Mol Microbiol , vol.17 , pp. 953-960
    • Fujita, Y.1    Miwa, Y.2    Galinier, A.3    Deutscher, J.4
  • 9
    • 55749096932 scopus 로고    scopus 로고
    • Carbon catabolite repression in Bacillus subtilis: quantitative analysis of repression exerted by different carbon sources
    • 10.1128/JB.00848-08, 2580719, 18757537
    • Singh KD, Schmalisch MH, Stülke J, Görke B. Carbon catabolite repression in Bacillus subtilis: quantitative analysis of repression exerted by different carbon sources. J Bacteriol 2008, 190:7275-7284. 10.1128/JB.00848-08, 2580719, 18757537.
    • (2008) J Bacteriol , vol.190 , pp. 7275-7284
    • Singh, K.D.1    Schmalisch, M.H.2    Stülke, J.3    Görke, B.4
  • 10
    • 84855493561 scopus 로고    scopus 로고
    • Carbon source control of the phosphorylation state of the Bacillus subtilis carbon-flux regulator Crh in vivo
    • 10.1111/j.1574-6968.2011.02456.x, 22092971
    • Landmann JJ, Werner S, Hillen W, Stülke J, Görke B. Carbon source control of the phosphorylation state of the Bacillus subtilis carbon-flux regulator Crh in vivo. FEMS Microbiol Lett 2012, 327:47-53. 10.1111/j.1574-6968.2011.02456.x, 22092971.
    • (2012) FEMS Microbiol Lett , vol.327 , pp. 47-53
    • Landmann, J.J.1    Werner, S.2    Hillen, W.3    Stülke, J.4    Görke, B.5
  • 11
    • 2342494366 scopus 로고    scopus 로고
    • Drastic differences in Crh and HPr synthesis levels reflect their different impacts on catabolite repression in Bacillus subtilis
    • 10.1128/JB.186.10.2992-2995.2004, 400640, 15126459
    • Görke B, Fraysse L, Galinier A. Drastic differences in Crh and HPr synthesis levels reflect their different impacts on catabolite repression in Bacillus subtilis. J Bacteriol 2004, 186:2992-2995. 10.1128/JB.186.10.2992-2995.2004, 400640, 15126459.
    • (2004) J Bacteriol , vol.186 , pp. 2992-2995
    • Görke, B.1    Fraysse, L.2    Galinier, A.3
  • 12
    • 0034695574 scopus 로고    scopus 로고
    • The HPr kinase from Bacillus subtilis is a homo-oligomeric enzyme which exhibits strong positive cooperativity for nucleotide and fructose 1,6-bisphosphate binding
    • 10.1074/jbc.275.3.1773, 10636874
    • Jault J-M, Fieulaine S, Nessler S, Gonzalo P, Di Pietro A, Deutscher J, Galinier A. The HPr kinase from Bacillus subtilis is a homo-oligomeric enzyme which exhibits strong positive cooperativity for nucleotide and fructose 1,6-bisphosphate binding. J Biol Chem 2000, 275:1773-1780. 10.1074/jbc.275.3.1773, 10636874.
    • (2000) J Biol Chem , vol.275 , pp. 1773-1780
    • Jault, J.-M.1    Fieulaine, S.2    Nessler, S.3    Gonzalo, P.4    Di Pietro, A.5    Deutscher, J.6    Galinier, A.7
  • 13
    • 0037478850 scopus 로고    scopus 로고
    • HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria: structural aspects of the enzyme and the complex with its protein substrate
    • 10.1128/JB.185.14.4003-4010.2003, 164879, 12837773
    • Nessler S, Fieulaine S, Poncet S, Galinier A, Deutscher J, Janin J. HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria: structural aspects of the enzyme and the complex with its protein substrate. J Bacteriol 2003, 185:4003-4010. 10.1128/JB.185.14.4003-4010.2003, 164879, 12837773.
    • (2003) J Bacteriol , vol.185 , pp. 4003-4010
    • Nessler, S.1    Fieulaine, S.2    Poncet, S.3    Galinier, A.4    Deutscher, J.5    Janin, J.6
  • 14
    • 0028917215 scopus 로고
    • Protein kinase-dependent HPr/CcpA interaction links glycolytic activity to carbon catabolite repression in Gram-positive bacteria
    • 10.1111/j.1365-2958.1995.tb02280.x, 7623661
    • Deutscher J, Küster E, Bergstedt U, Charrier V, Hillen W. Protein kinase-dependent HPr/CcpA interaction links glycolytic activity to carbon catabolite repression in Gram-positive bacteria. Mol Microbiol 1995, 15:1049-1053. 10.1111/j.1365-2958.1995.tb02280.x, 7623661.
    • (1995) Mol Microbiol , vol.15 , pp. 1049-1053
    • Deutscher, J.1    Küster, E.2    Bergstedt, U.3    Charrier, V.4    Hillen, W.5
  • 15
    • 0031557402 scopus 로고    scopus 로고
    • Cooperative and non-cooperative DNA binding modes of catabolite control protein CcpA from Bacillus megaterium result from sensing two different signals
    • 10.1006/jmbi.1996.0820, 9102460
    • Gösseringer R, Küster E, Galinier A, Deutscher J, Hillen W. Cooperative and non-cooperative DNA binding modes of catabolite control protein CcpA from Bacillus megaterium result from sensing two different signals. J Mol Biol 1997, 266:665-676. 10.1006/jmbi.1996.0820, 9102460.
    • (1997) J Mol Biol , vol.266 , pp. 665-676
    • Gösseringer, R.1    Küster, E.2    Galinier, A.3    Deutscher, J.4    Hillen, W.5
  • 16
    • 0032483005 scopus 로고    scopus 로고
    • NADP, corepressor for the Bacillus catabolite control protein CcpA
    • 10.1073/pnas.95.16.9590, 21383, 9689125
    • Kim J-H, Voskuil MI, Chambliss GH. NADP, corepressor for the Bacillus catabolite control protein CcpA. Proc Natl Acad Sci USA 1998, 95:9590-9595. 10.1073/pnas.95.16.9590, 21383, 9689125.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9590-9595
    • Kim, J.-H.1    Voskuil, M.I.2    Chambliss, G.H.3
  • 17
    • 0031733741 scopus 로고    scopus 로고
    • Transcriptional activation of the Bacillus subtilis ackA gene requires sequences upstream of the promoter
    • 107671, 9811655
    • Turinsky AJ, Grundy FJ, Kim J-H, Chambliss GH, Henkin TM. Transcriptional activation of the Bacillus subtilis ackA gene requires sequences upstream of the promoter. J Bacteriol 1998, 180:5961-5967. 107671, 9811655.
    • (1998) J Bacteriol , vol.180 , pp. 5961-5967
    • Turinsky, A.J.1    Grundy, F.J.2    Kim, J.-H.3    Chambliss, G.H.4    Henkin, T.M.5
  • 19
    • 20344400380 scopus 로고    scopus 로고
    • Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA
    • 10.1111/j.1365-2958.2005.04635.x, 15916606
    • Tojo S, Satomura T, Morisaki K, Deutscher J, Hirooka K, Fujita Y. Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA. Mol Microbiol 2005, 56:1560-1573. 10.1111/j.1365-2958.2005.04635.x, 15916606.
    • (2005) Mol Microbiol , vol.56 , pp. 1560-1573
    • Tojo, S.1    Satomura, T.2    Morisaki, K.3    Deutscher, J.4    Hirooka, K.5    Fujita, Y.6
  • 20
    • 20344374720 scopus 로고    scopus 로고
    • Bacillus subtilis ilvB operon: an intersection of global regulons
    • 10.1111/j.1365-2958.2005.04634.x, 15916605
    • Shivers RP, Sonenshein AL. Bacillus subtilis ilvB operon: an intersection of global regulons. Mol Microbiol 2005, 56:1549-1559. 10.1111/j.1365-2958.2005.04634.x, 15916605.
    • (2005) Mol Microbiol , vol.56 , pp. 1549-1559
    • Shivers, R.P.1    Sonenshein, A.L.2
  • 21
    • 33750002507 scopus 로고    scopus 로고
    • Positive regulation of Bacillus subtilis ackA by CodY and CcpA: establishing a potential hierarchy in carbon flow
    • 10.1111/j.1365-2958.2006.05410.x, 16995897
    • Shivers RP, Dineen SS, Sonenshein AL. Positive regulation of Bacillus subtilis ackA by CodY and CcpA: establishing a potential hierarchy in carbon flow. Mol Microbiol 2006, 62:811-822. 10.1111/j.1365-2958.2006.05410.x, 16995897.
    • (2006) Mol Microbiol , vol.62 , pp. 811-822
    • Shivers, R.P.1    Dineen, S.S.2    Sonenshein, A.L.3
  • 22
    • 84861903420 scopus 로고    scopus 로고
    • CcpA forms complexes with CodY and RpoA in Bacillus subtilis
    • 10.1111/j.1742-4658.2012.08604.x, 22512862
    • Wünsche A, Hammer E, Bartholomae M, Völker U, Burkovski A, Seidel G, Hillen W. CcpA forms complexes with CodY and RpoA in Bacillus subtilis. FEBS J 2012, 279:2201-2214. 10.1111/j.1742-4658.2012.08604.x, 22512862.
    • (2012) FEBS J , vol.279 , pp. 2201-2214
    • Wünsche, A.1    Hammer, E.2    Bartholomae, M.3    Völker, U.4    Burkovski, A.5    Seidel, G.6    Hillen, W.7
  • 23
    • 0035087351 scopus 로고    scopus 로고
    • Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site
    • 10.1128/JB.183.7.2389-2393.2001, 95151, 11244084
    • Moir-Blais TR, Grundy FJ, Henkin TM. Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site. J Bacteriol 2001, 183:2389-2393. 10.1128/JB.183.7.2389-2393.2001, 95151, 11244084.
    • (2001) J Bacteriol , vol.183 , pp. 2389-2393
    • Moir-Blais, T.R.1    Grundy, F.J.2    Henkin, T.M.3
  • 24
    • 0028859554 scopus 로고
    • Two different mechanisms mediate catabolite repression of the Bacillus subtilis levanase operon
    • 177561, 7592486
    • Martin-Verstraete I, Stülke J, Klier A, Rapoport G. Two different mechanisms mediate catabolite repression of the Bacillus subtilis levanase operon. J Bacteriol 1995, 177:6919-6927. 177561, 7592486.
    • (1995) J Bacteriol , vol.177 , pp. 6919-6927
    • Martin-Verstraete, I.1    Stülke, J.2    Klier, A.3    Rapoport, G.4
  • 25
    • 0023579076 scopus 로고
    • Catabolite repression-resistant mutations of the Bacillus subtilis α-amylase promoter affect transcription levels and are in an operator-like sequence
    • 10.1016/0022-2836(87)90204-X, 3123701
    • Nicholson WL, Park YK, Henkin TM, Won M, Weickert MJ, Gaskell JA, Chambliss GH. Catabolite repression-resistant mutations of the Bacillus subtilis α-amylase promoter affect transcription levels and are in an operator-like sequence. J Mol Biol 1987, 198:609-618. 10.1016/0022-2836(87)90204-X, 3123701.
    • (1987) J Mol Biol , vol.198 , pp. 609-618
    • Nicholson, W.L.1    Park, Y.K.2    Henkin, T.M.3    Won, M.4    Weickert, M.J.5    Gaskell, J.A.6    Chambliss, G.H.7
  • 26
    • 0029916568 scopus 로고    scopus 로고
    • Transcriptional analysis of bglPH expression in Bacillus subtilis: evidence for two distinct pathways mediating carbon catabolite repression
    • 177989, 8626332
    • Krüger S, Gertz S, Hecker M. Transcriptional analysis of bglPH expression in Bacillus subtilis: evidence for two distinct pathways mediating carbon catabolite repression. J Bacteriol 1996, 178:2637-2644. 177989, 8626332.
    • (1996) J Bacteriol , vol.178 , pp. 2637-2644
    • Krüger, S.1    Gertz, S.2    Hecker, M.3
  • 27
    • 0035002303 scopus 로고    scopus 로고
    • Catabolite regulation of the cytochrome c550-encoding Bacillus subtilis cccA gene
    • Monedero V, Boël G, Deutscher J. Catabolite regulation of the cytochrome c550-encoding Bacillus subtilis cccA gene. J Mol Microbiol Biotechnol 2001, 3:433-438.
    • (2001) J Mol Microbiol Biotechnol , vol.3 , pp. 433-438
    • Monedero, V.1    Boël, G.2    Deutscher, J.3
  • 28
    • 0033968158 scopus 로고    scopus 로고
    • Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis
    • Asai K, Baik SH, Kasahara Y, Moriya S, Ogasawara N. Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis. Microbiology (Reading, Engl.) 2000, 146(Pt 2):263-271.
    • (2000) Microbiology (Reading, Engl.) , vol.146 , Issue.PART 2 , pp. 263-271
    • Asai, K.1    Baik, S.H.2    Kasahara, Y.3    Moriya, S.4    Ogasawara, N.5
  • 29
    • 0036227754 scopus 로고    scopus 로고
    • Antitermination by GlpP, catabolite repression via CcpA and inducer exclusion triggered by P GlpK dephosphorylation control Bacillus subtilis glpFK expression
    • 10.1046/j.1365-2958.2002.02800.x, 11929549
    • Darbon E, Servant P, Poncet S, Deutscher J. Antitermination by GlpP, catabolite repression via CcpA and inducer exclusion triggered by P GlpK dephosphorylation control Bacillus subtilis glpFK expression. Mol Microbiol 2002, 43:1039-1052. 10.1046/j.1365-2958.2002.02800.x, 11929549.
    • (2002) Mol Microbiol , vol.43 , pp. 1039-1052
    • Darbon, E.1    Servant, P.2    Poncet, S.3    Deutscher, J.4
  • 30
    • 32444450897 scopus 로고    scopus 로고
    • CcpA causes repression of the phoPR promoter through a novel transcription start site, PA6
    • 10.1128/JB.188.4.1266-1278.2006, 1367233, 16452408
    • Puri-Taneja A, Paul S, Chen Y, Hulett FM. CcpA causes repression of the phoPR promoter through a novel transcription start site, PA6. J Bacteriol 2006, 188:1266-1278. 10.1128/JB.188.4.1266-1278.2006, 1367233, 16452408.
    • (2006) J Bacteriol , vol.188 , pp. 1266-1278
    • Puri-Taneja, A.1    Paul, S.2    Chen, Y.3    Hulett, F.M.4
  • 31
    • 0027497020 scopus 로고
    • Identification of genes involved in utilization of acetate and acetoin in Bacillus subtilis
    • 10.1111/j.1365-2958.1993.tb01952.x, 7934817
    • Grundy FJ, Waters DA, Takova TY, Henkin TM. Identification of genes involved in utilization of acetate and acetoin in Bacillus subtilis. Mol Microbiol 1993, 10:259-271. 10.1111/j.1365-2958.1993.tb01952.x, 7934817.
    • (1993) Mol Microbiol , vol.10 , pp. 259-271
    • Grundy, F.J.1    Waters, D.A.2    Takova, T.Y.3    Henkin, T.M.4
  • 32
    • 0025071837 scopus 로고
    • Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis
    • 10.1073/pnas.87.16.6238, 54508, 2117276
    • Weickert MJ, Chambliss GH. Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis. Proc Natl Acad Sci U S A 1990, 87:6238-6242. 10.1073/pnas.87.16.6238, 54508, 2117276.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 6238-6242
    • Weickert, M.J.1    Chambliss, G.H.2
  • 33
    • 0034159917 scopus 로고    scopus 로고
    • Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis
    • 10.1093/nar/28.5.1206, 102602, 10666464
    • Miwa Y, Nakata A, Ogiwara A, Yamamoto M, Fujita Y. Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Res 2000, 28:1206-1210. 10.1093/nar/28.5.1206, 102602, 10666464.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1206-1210
    • Miwa, Y.1    Nakata, A.2    Ogiwara, A.3    Yamamoto, M.4    Fujita, Y.5
  • 34
    • 79954607096 scopus 로고    scopus 로고
    • Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators
    • 3074128, 21106498
    • Schumacher MA, Sprehe M, Bartholomae M, Hillen W, Brennan RG. Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators. Nucleic Acids Res 2010, 39:2931-2942. 3074128, 21106498.
    • (2010) Nucleic Acids Res , vol.39 , pp. 2931-2942
    • Schumacher, M.A.1    Sprehe, M.2    Bartholomae, M.3    Hillen, W.4    Brennan, R.G.5
  • 35
    • 13544262411 scopus 로고    scopus 로고
    • Tetracycline-dependent conditional gene knockout in Bacillus subtilis
    • 10.1128/AEM.71.2.728-733.2005, 546824, 15691923
    • Kamionka A, Bertram R, Hillen W. Tetracycline-dependent conditional gene knockout in Bacillus subtilis. Appl Environ Microbiol 2005, 71:728-733. 10.1128/AEM.71.2.728-733.2005, 546824, 15691923.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 728-733
    • Kamionka, A.1    Bertram, R.2    Hillen, W.3
  • 36
    • 0036856331 scopus 로고    scopus 로고
    • TonB of Escherichia coli activates FhuA through interaction with the β-barrel
    • Killmann H, Herrmann C, Torun A, Jung G, Braun V. TonB of Escherichia coli activates FhuA through interaction with the β-barrel. Microbiology 2002, 148:3497-3509.
    • (2002) Microbiology , vol.148 , pp. 3497-3509
    • Killmann, H.1    Herrmann, C.2    Torun, A.3    Jung, G.4    Braun, V.5
  • 37
    • 0030899835 scopus 로고    scopus 로고
    • Catabolite repression of the Bacillus subtilis gnt operon exerted by two catabolite-responsive elements
    • 10.1046/j.1365-2958.1997.2921662.x, 9106211
    • Miwa Y, Nagura K, Eguchi S, Fukuda H, Deutscher J, Fujita Y. Catabolite repression of the Bacillus subtilis gnt operon exerted by two catabolite-responsive elements. Mol Microbiol 1997, 23:1203-1213. 10.1046/j.1365-2958.1997.2921662.x, 9106211.
    • (1997) Mol Microbiol , vol.23 , pp. 1203-1213
    • Miwa, Y.1    Nagura, K.2    Eguchi, S.3    Fukuda, H.4    Deutscher, J.5    Fujita, Y.6
  • 38
    • 0030057004 scopus 로고    scopus 로고
    • The role of CcpA transcriptional regulator in carbon metabolism in Bacillus subtilis
    • 10.1111/j.1574-6968.1996.tb07959.x, 8598282
    • Henkin TM. The role of CcpA transcriptional regulator in carbon metabolism in Bacillus subtilis. FEMS Microbiol Lett 1996, 135:9-15. 10.1111/j.1574-6968.1996.tb07959.x, 8598282.
    • (1996) FEMS Microbiol Lett , vol.135 , pp. 9-15
    • Henkin, T.M.1
  • 39
    • 0033582597 scopus 로고    scopus 로고
    • Phosphorylation of either Crh or HPr mediates binding of CcpA to the Bacillus subtilis xyn cre and catabolite repression of the xyn operon
    • 10.1006/jmbi.1998.2492, 9973552
    • Galinier A, Deutscher J, Martin-Verstraete I. Phosphorylation of either Crh or HPr mediates binding of CcpA to the Bacillus subtilis xyn cre and catabolite repression of the xyn operon. J Mol Biol 1999, 286:307-314. 10.1006/jmbi.1998.2492, 9973552.
    • (1999) J Mol Biol , vol.286 , pp. 307-314
    • Galinier, A.1    Deutscher, J.2    Martin-Verstraete, I.3
  • 40
    • 0035103809 scopus 로고    scopus 로고
    • Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses
    • 10.1111/j.1365-2958.2001.02328.x, 11251851
    • Moreno MS, Schneider BL, Maile RR, Weyler W, Saier MH. Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses. Mol Microbiol 2001, 39:1366-1381. 10.1111/j.1365-2958.2001.02328.x, 11251851.
    • (2001) Mol Microbiol , vol.39 , pp. 1366-1381
    • Moreno, M.S.1    Schneider, B.L.2    Maile, R.R.3    Weyler, W.4    Saier, M.H.5
  • 41
    • 0347126296 scopus 로고    scopus 로고
    • DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
    • 10.1093/nar/gkh074, 308808, 14681362
    • Makita Y, Nakao M, Ogasawara N, Nakai K. DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res 2004, 32:D75-D77. 10.1093/nar/gkh074, 308808, 14681362.
    • (2004) Nucleic Acids Res , vol.32
    • Makita, Y.1    Nakao, M.2    Ogasawara, N.3    Nakai, K.4
  • 43
    • 4644279904 scopus 로고    scopus 로고
    • Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
    • 10.1186/gb-2004-5-5-r37, 416473, 15128451
    • Baerends RJS, Smits WK, de Jong A, Hamoen LW, Kok J, Kuipers OP. Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data. Genome Biol 2004, 5:R37. 10.1186/gb-2004-5-5-r37, 416473, 15128451.
    • (2004) Genome Biol , vol.5
    • Baerends, R.J.S.1    Smits, W.K.2    de Jong, A.3    Hamoen, L.W.4    Kok, J.5    Kuipers, O.P.6
  • 44
    • 33845765190 scopus 로고    scopus 로고
    • Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes
    • 10.1159/000096463, 17183215
    • Lulko AT, Buist G, Kok J, Kuipers OP. Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes. J Mol Microbiol Biotechnol 2007, 12:82-95. 10.1159/000096463, 17183215.
    • (2007) J Mol Microbiol Biotechnol , vol.12 , pp. 82-95
    • Lulko, A.T.1    Buist, G.2    Kok, J.3    Kuipers, O.P.4
  • 45
    • 16244392719 scopus 로고    scopus 로고
    • Evidence that Bacillus catabolite control protein CcpA interacts with RNA polymerase to inhibit transcription
    • 10.1111/j.1365-2958.2005.04496.x, 15773986
    • Kim J-H, Yang Y-K, Chambliss GH. Evidence that Bacillus catabolite control protein CcpA interacts with RNA polymerase to inhibit transcription. Mol Microbiol 2005, 56:155-162. 10.1111/j.1365-2958.2005.04496.x, 15773986.
    • (2005) Mol Microbiol , vol.56 , pp. 155-162
    • Kim, J.-H.1    Yang, Y.-K.2    Chambliss, G.H.3
  • 46
    • 0038267065 scopus 로고    scopus 로고
    • Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways
    • 10.1016/S1096-7176(03)00009-0, 12850135
    • Blencke H-M, Homuth G, Ludwig H, Mäder U, Hecker M, Stülke J. Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways. Metab Eng 2003, 5:133-149. 10.1016/S1096-7176(03)00009-0, 12850135.
    • (2003) Metab Eng , vol.5 , pp. 133-149
    • Blencke, H.-M.1    Homuth, G.2    Ludwig, H.3    Mäder, U.4    Hecker, M.5    Stülke, J.6
  • 47
    • 0036065304 scopus 로고    scopus 로고
    • Control of the glycolytic gapA operon by the catabolite control protein A in Bacillus subtilis: a novel mechanism of CcpA-mediated regulation
    • 10.1046/j.1365-2958.2002.03034.x, 12123463
    • Ludwig H, Rebhan N, Blencke H-M, Merzbacher M, Stülke J. Control of the glycolytic gapA operon by the catabolite control protein A in Bacillus subtilis: a novel mechanism of CcpA-mediated regulation. Mol Microbiol 2002, 45:543-553. 10.1046/j.1365-2958.2002.03034.x, 12123463.
    • (2002) Mol Microbiol , vol.45 , pp. 543-553
    • Ludwig, H.1    Rebhan, N.2    Blencke, H.-M.3    Merzbacher, M.4    Stülke, J.5
  • 48
    • 33846916395 scopus 로고    scopus 로고
    • Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363
    • 10.1128/JB.01013-06, 1797362, 17028270
    • Zomer AL, Buist G, Larsen R, Kok J, Kuipers OP. Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 2007, 189:1366-1381. 10.1128/JB.01013-06, 1797362, 17028270.
    • (2007) J Bacteriol , vol.189 , pp. 1366-1381
    • Zomer, A.L.1    Buist, G.2    Larsen, R.3    Kok, J.4    Kuipers, O.P.5
  • 49
    • 0025953332 scopus 로고
    • Catabolite repression of the operon for xylose utilization from Bacillus subtilis W23 is mediated at the level of transcription and depends on a cis site in the xylA reading frame
    • 10.1007/BF00272155, 1921970
    • Jacob S, Allmansberger R, Gärtner D, Hillen W. Catabolite repression of the operon for xylose utilization from Bacillus subtilis W23 is mediated at the level of transcription and depends on a cis site in the xylA reading frame. Mol Gen Genet 1991, 229:189-196. 10.1007/BF00272155, 1921970.
    • (1991) Mol Gen Genet , vol.229 , pp. 189-196
    • Jacob, S.1    Allmansberger, R.2    Gärtner, D.3    Hillen, W.4
  • 50
    • 0031779321 scopus 로고    scopus 로고
    • Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons
    • 10.1046/j.1365-2958.1998.00751.x, 9535092
    • Zalieckas JM, Wray J, Ferson AE, Fisher SH. Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons. Mol Microbiol 1998, 27:1031-1038. 10.1046/j.1365-2958.1998.00751.x, 9535092.
    • (1998) Mol Microbiol , vol.27 , pp. 1031-1038
    • Zalieckas, J.M.1    Wray, J.2    Ferson, A.E.3    Fisher, S.H.4
  • 51
    • 0141480274 scopus 로고    scopus 로고
    • Distinct molecular mechanisms involved in carbon catabolite repression of the arabinose regulon in Bacillus subtilis
    • 10.1099/mic.0.26326-0, 12949161
    • Inácio JM, Costa C, de Sá-Nogueira I. Distinct molecular mechanisms involved in carbon catabolite repression of the arabinose regulon in Bacillus subtilis. Microbiology 2003, 149:2345-2355. 10.1099/mic.0.26326-0, 12949161.
    • (2003) Microbiology , vol.149 , pp. 2345-2355
    • Inácio, J.M.1    Costa, C.2    de Sá-Nogueira, I.3
  • 52
    • 25144520372 scopus 로고    scopus 로고
    • Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism
    • 10.1128/JB.187.19.6856-6861.2005, 1251575, 16166551
    • Choi S-K, Saier MH. Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol 2005, 187:6856-6861. 10.1128/JB.187.19.6856-6861.2005, 1251575, 16166551.
    • (2005) J Bacteriol , vol.187 , pp. 6856-6861
    • Choi, S.-K.1    Saier, M.H.2
  • 53
    • 0032431399 scopus 로고    scopus 로고
    • Expression of the Bacillus subtilis acsA gene: position and sequence context affect cre-mediated carbon catabolite repression
    • 107769, 9852010
    • Zalieckas JM, Wray LV, Fisher SH. Expression of the Bacillus subtilis acsA gene: position and sequence context affect cre-mediated carbon catabolite repression. J Bacteriol 1998, 180:6649-6654. 107769, 9852010.
    • (1998) J Bacteriol , vol.180 , pp. 6649-6654
    • Zalieckas, J.M.1    Wray, L.V.2    Fisher, S.H.3
  • 54
    • 0028136632 scopus 로고
    • Catabolite regulation of Bacillus subtilis acetate and acetoin utilization genes by CcpA
    • 196271, 7913927
    • Grundy FJ, Turinsky AJ, Henkin TM. Catabolite regulation of Bacillus subtilis acetate and acetoin utilization genes by CcpA. J Bacteriol 1994, 176:4527-4533. 196271, 7913927.
    • (1994) J Bacteriol , vol.176 , pp. 4527-4533
    • Grundy, F.J.1    Turinsky, A.J.2    Henkin, T.M.3
  • 55
    • 0029619251 scopus 로고
    • Regulation of the putative bglPH operon for aryl-β-glucoside utilization in Bacillus subtilis
    • 177369, 7559347
    • Krüger S, Hecker M. Regulation of the putative bglPH operon for aryl-β-glucoside utilization in Bacillus subtilis. J Bacteriol 1995, 177:5590-5597. 177369, 7559347.
    • (1995) J Bacteriol , vol.177 , pp. 5590-5597
    • Krüger, S.1    Hecker, M.2
  • 56
    • 18944375835 scopus 로고    scopus 로고
    • Quantitative interdependence of coeffectors, CcpA and cre in carbon catabolite regulation of Bacillus subtilis
    • 10.1111/j.1742-4658.2005.04682.x, 15885105
    • Seidel G, Diel M, Fuchsbauer N, Hillen W. Quantitative interdependence of coeffectors, CcpA and cre in carbon catabolite regulation of Bacillus subtilis. FEBS J 2005, 272:2566-2577. 10.1111/j.1742-4658.2005.04682.x, 15885105.
    • (2005) FEBS J , vol.272 , pp. 2566-2577
    • Seidel, G.1    Diel, M.2    Fuchsbauer, N.3    Hillen, W.4
  • 57
    • 0029590029 scopus 로고
    • Antibiotic-resistance cassettes for Bacillus subtilis
    • 10.1016/0378-1119(95)00652-4, 8566804
    • Guérout-Fleury AM, Shazand K, Frandsen N, Stragier P. Antibiotic-resistance cassettes for Bacillus subtilis. Gene 1995, 167:335-336. 10.1016/0378-1119(95)00652-4, 8566804.
    • (1995) Gene , vol.167 , pp. 335-336
    • Guérout-Fleury, A.M.1    Shazand, K.2    Frandsen, N.3    Stragier, P.4
  • 58
    • 28544442715 scopus 로고    scopus 로고
    • Integrative elements for Bacillus subtilis yielding tetracycline-dependent growth phenotypes
    • 10.1093/nar/gni154, 1253839, 16221969
    • Bertram R, Kostner M, Muller J, Vazquez Ramos J, Hillen W. Integrative elements for Bacillus subtilis yielding tetracycline-dependent growth phenotypes. Nucleic Acids Res 2005, 33:e153. 10.1093/nar/gni154, 1253839, 16221969.
    • (2005) Nucleic Acids Res , vol.33
    • Bertram, R.1    Kostner, M.2    Muller, J.3    Vazquez Ramos, J.4    Hillen, W.5
  • 60
    • 0343182993 scopus 로고    scopus 로고
    • Immunological crossreactivity to the catabolite control protein CcpA Bacillus megaterium is found in many Gram-positive bacteria
    • Küster E, Luesink EJ, de Vos WM, Hillen W. Immunological crossreactivity to the catabolite control protein CcpA Bacillus megaterium is found in many Gram-positive bacteria. FEMS Microbiol Lett 1996, 139:109-115.
    • (1996) FEMS Microbiol Lett , vol.139 , pp. 109-115
    • Küster, E.1    Luesink, E.J.2    de Vos, W.M.3    Hillen, W.4
  • 62
    • 0035827588 scopus 로고    scopus 로고
    • Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
    • 10.1074/jbc.M010192200, 11259426
    • Long AD, Mangalam HJ, Chan BY, Tolleri L, Hatfield GW, Baldi P. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J Biol Chem 2001, 276:19937-19944. 10.1074/jbc.M010192200, 11259426.
    • (2001) J Biol Chem , vol.276 , pp. 19937-19944
    • Long, A.D.1    Mangalam, H.J.2    Chan, B.Y.3    Tolleri, L.4    Hatfield, G.W.5    Baldi, P.6
  • 63
    • 84863111753 scopus 로고    scopus 로고
    • PePPER: a webserver for prediction of prokaryote promoter elements and regulons
    • 10.1186/1471-2164-13-299, 22747501
    • de Jong A, Pietersma H, Cordes M, Kuipers OP, Kok J. PePPER: a webserver for prediction of prokaryote promoter elements and regulons. BMC Genomics 2012, 13:299. 10.1186/1471-2164-13-299, 22747501.
    • (2012) BMC Genomics , vol.13 , pp. 299
    • de Jong, A.1    Pietersma, H.2    Cordes, M.3    Kuipers, O.P.4    Kok, J.5


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