Correlative microscopy

Archives of Biochemistry and Biophysics

Volumn 581, Issue , 2015, Pages 98-110

  Loussert Fonta, Céline ^a,b   Humbel, Bruno M ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

^b NESTLÉ RESEARCH CENTER   (Switzerland)

Author keywords

Correlative microscopy; Cryo fixation and Freeze substitution; Epoxy; GFP green fluorescent protein; Immuno (gold) labelling; Light and Electron microscopy; Methacrylate; Mouse brain; STEM scanning transmission electron microscopy; Tokuyasu cryo sectioning

Indexed keywords

ANTIBODY LABELING; CORRELATIONAL STUDY; CORRELATIVE MICROSCOPY; ELECTRON MICROSCOPE; ELECTRON MICROSCOPY; FLUORESCENCE; MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; REACTION TIME; REVIEW; ULTRASTRUCTURE; FLUORESCENCE MICROSCOPY; PROCEDURES;

MICROSCOPY, ELECTRON; MICROSCOPY, FLUORESCENCE;

EID: 84939253314     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2015.05.017     Document Type: Review

References (148)

1. M. Osborn, R.E. Webster, and K. Weber J. Cell Biol. 77 1978 R27 R34
2. R.E. Webster, M. Osborn, and K. Weber Exp. Cell Res. 117 1978 47 61
3. S.W. Hell, M. Dyba, and S. Jakobs Curr. Opin. Neurobiol. 14 2004 599 609
4. R. Henriques, C. Griffiths, E.H. Rego, and M.M. Mhlanga Biopolymers 95 2011 322 331
5. E. Betzig, G.H. Patterson, R. Sougrat, O.W. Lindwasser, S. Olenych, J.S. Bonifacino, M.W. Davidson, J. Lippincott-Schwartz, and H.F. Hess Science 313 2006 1642 1645
6. M.J. Rust, M. Bates, and X. Zhuang Nat. Methods 3 2006 793 796
7. S. Modla, and K. Czymmek Micron 42 2011 773 792
8. J. Roth, M. Bendayan, E. Carlemalm, W. Villiger, and M. Garavito J. Histochem. Cytochem. 29 1981 663 671
9. E. Carlemalm, R.M. Garavito, and W. Villiger J. Microsc. 126 1982 123 143
10. B.L. Armbruster, E. Kellenberger, E. Carlemalm, W. Villiger, R.M. Garavito, J.A. Hobot, R. Chiovetti, and J.D. Acetarin J.P. Revel, T. Barnard, G.H. Haggis, The Science of Biological Specimen Preparation 1983 1983 SEM Inc., AMF O'Hare IL 60666 77 81
11. J.D. Acetarin, E. Carlemalm, and W. Villiger J. Microsc. 143 1986 81 88
12. B.G. Timms Am. J. Anat. 175 1986 267 275
13. G.R. Newman, and J.A. Hobot J. Histochem. Cytochem. 35 1987 971 981
14. J.A. Hobot, and G.R. Newman Scanning Microsc. Suppl. 5 1991 S27 S41
15. C. Scala, G. Cenacchi, C. Ferrari, G. Pasquinelli, P. Preda, and G.C. Manara J. Histochem. Cytochem. 40 1992 1799 1804
16. J.J. Bogers, H.A. Nibbeling, A.M. Deelder, and E.A. Van Marck J. Histochem. Cytochem. 44 1996 43 48
17. G. Goping, G.A.J. Kuijpers, R. Vinet, and H.B. Pollard J. Histochem. Cytochem. 44 1996 289 295
18. B. Humbel, T. Marti, and M. Müller Beitr. Elektronenmikroskop. Direktabb. Oberfl. 16 1983 585 594
19. B. Humbel, and M. Müller M. Müller, R.P. Becker, A. Boyde, J.J. Wolosewick, The Science of Biological Specimen Preparation 1985 1986 SEM Inc., AMF O'Hare 175 183
20. B.M. Humbel, and H. Schwarz A.J. Verkleij, J.L.M. Leunissen, Immuno-Gold Labeling in Cell Biology 1989 CRC Press Boca Raton 115 134
21. H. Schwarz, and B.M. Humbel Scanning Microsc. Suppl. 3 1989 57 64
22. K.T. Tokuyasu J. Cell Biol. 57 1973 551 565
23. K.T. Tokuyasu, and S.J. Singer J. Cell Biol. 71 1976 894 906
24. K.T. Tokuyasu Histochem. J. 12 1980 381 403
25. G. Griffiths, K. Simons, G. Warren, and K.T. Tokuyasu Methods Enzymol. 96 1983 466 485
26. W. Liou, H.J. Geuze, and J.W. Slot Histochem. Cell Biol. 106 1996 41 58
27. J.W. Slot, and H.J. Geuze Nat. Protoc. 2 2007 2480 2491
28. T. Kurth, H. Schwarz, S. Schneider, and P. Hausen Cell Tissue Res. 286 1996 1 12
29. H. Schwarz H.A. Calderón Benavides, M.J. Yacamán, L.F. Jiménez, J.B. Kouri, Electron Microscopy 1998, ICEM 14 1998 Institute of Physics Publishing Bristol, Philadelphia 865 866
30. H. Schwarz, and B.M. Humbel Methods Mol. Biol. 1117 2014 559 592
31. J.M. Robinson, T. Takizawa, A. Pombo, and P.R. Cook J. Histochem. Cytochem. 49 2001 803 808
32. T. Takizawa, and J.M. Robinson Placenta 24 2003 557 565
33. T. Takizawa, and J.M. Robinson J. Nippon Med. Sch. 71 2004 306 307
34. G. Vicidomini, M.C. Gagliani, M. Canfora, K. Cortese, F. Frosi, C. Santangelo, P.P. Di Fiore, P. Boccacci, A. Diaspro, and C. Tacchetti Traffic 9 2008 1828 1838
35. H. Pluk, D.J. Stokes, B. Lich, B. Wieringa, and J.A.M. Fransen J. Microsc. 233 2009 353 363
36. M.A. Karreman, A.V. Agronskaia, A.J. Verkleij, F.F.M. Cremers, H.C. Gerritsen, and B.M. Humbel Biol. Cell 101 2009 287 299
37. A.V. Agronskaia, J.A. Valentijn, L.F. van Driel, C.T.W.M. Schneijdenberg, B.M. Humbel, P.M.P. van Bergen en Henegouwen, A.J. Verkleij, A.J. Koster, and H.C. Gerritsen J. Struct. Biol. 164 2008 183 189
38. C. Loussert Fonta, A. Leis, C. Mathisen, D.S. Bouvier, W. Blanchard, A. Volterra, B. Lich, and B.M. Humbel J. Struct. Biol. 189 2015 53 61
39. A. Sartori, R. Gatz, F. Beck, A. Rigort, W. Baumeister, and J.M. Plitzko J. Struct. Biol. 160 2007 135 145
40. F.G.A. Faas, M. Bárcena, A.V. Agronskaia, H.C. Gerritsen, K.B. Moscicka, A.A. Diebolder, L.F. Van Driel, R.W.A.L. Limpens, E. Bos, R.B.G. Ravelli, R.I. Koning, and A.J. Koster J. Struct. Biol. 181 2013 283 290
41. A. Manninen, P. Verkade, S. Le Lay, J. Torkko, M. Kasper, J. Füllekrug, and K. Simons Mol. Cell. Biol. 25 2005 10087 10096
42. P. Verkade J. Microsc. 230 2008 317 328
43. M. Grabenbauer, W.J.C. Geerts, J. Fernadez-Rodriguez, A. Hoenger, A.J. Koster, and T. Nilsson Nat. Methods 2 2005 857 862
44. A.A. Mironov, R.S. Polishchuk, and G.V. Beznoussenko Methods Cell Biol. 88 2008 83 95
45. A.A. Mironov, and G.V. Beznoussenko J. Microsc. 235 2009 308 321
46. C.-L. Forestier, C. Machu, C. Loussert, P. Pescher, and G.F. Späth Cell Host Microbe 9 2011 319 330
47. C. Loussert, C.-L. Forestier, and B.M. Humbel Methods Cell Biol. 111 2012 59 73
48. S.S. Biel, K. Kawaschinski, K.-P. Wittern, U. Hintze, and R. Wepf J. Microsc. 212 2003 91 99
49. M.S. Lucas, M. Günthert, P. Gasser, F. Lucas, and R. Wepf Methods Cell Biol. 111 2012 325 356
50. K. Wilke, K. Wick, F.J. Keil, K.-P. Wittern, R. Wepf, and S.S. Biel Exp. Dermatol. 17 2008 73 80
51. T.J. Deerinck, M.E. Martone, V. Lev-Ram, D.P.L. Green, R.Y. Tsien, D.L. Spector, S. Huang, and M.H. Ellisman J. Cell Biol. 126 1994 901 910
52. B.M. Humbel, M.D.M. de Jong, W.H. Müller, and A.J. Verkleij Microsc. Res. Tech. 42 1998 43 48
53. E. Brown, and P. Verkade Protoplasma 244 2010 91 97
54. R.E. Pagano, M.A. Sepanski, and O.C. Martin J. Cell Biol. 109 1989 2067 2079
55. Y.-D. Stierhof A. Cavalier, D. Spehner, B.M. Humbel, Handbook for Cryo-Preparation Methods for Electron Microscopy 2008 CRC Press Inc. Boca Raton, USA 588 616
56. K. Pohl, and Y.-D. Stierhof Microsc. Res. Tech. 42 1998 59 65
57. X. Shu, V. Lev-Ram, T.J. Deerinck, Y. Qi, E.B. Ramko, M.W. Davidson, Y. Jin, M.H. Ellisman, and R.Y. Tsien PLoS Biol. 9 2011 e1001041
58. G. Gaietta, T.J. Deerinck, S.R. Adams, J. Bouwer, O. Tour, D.W. Laird, G.E. Sosinsky, R.Y. Tsien, and M.H. Ellisman Science 296 2002 503 507
59. R.Y. Tsien Annu. Rev. Biochem. 67 1998 509 544
60. R.Y. Tsien Integr. Biol. 2 2010 77 93
61. M.G. Paez-Segala, M.G. Sun, G. Shtengel, S. Viswanathan, M.A. Baird, J.J. Macklin, R. Patel, J.R. Allen, E.S. Howe, G. Piszczek, H.F. Hess, M.W. Davidson, Y. Wang, and L.L. Looger Nat. Methods 2014 10.1038/nmeth.3225
62. J. Stinchcombe, H. Nomoto, D. Cutler, and C. Hopkins J. Cell Biol. 131 1995 1387 1401
63. M. Grabenbauer Methods Cell Biol. 111 2012 117 138
64. C. Meißlitzer-Ruppitsch, C. Röhrl, J. Neumüller, M. Pavelka, and A. Ellinger J. Microsc. 235 2009 322 335
65. C. Meißlitzer-Ruppitsch, M. Vetterlein, H. Stangl, S. Maier, J. Neumüller, M. Freissmuth, M. Pavelka, and A. Ellinger Histochem. Cell Biol. 130 2008 407 419
66. D. Bishop, I. Nikić, M. Brinkoetter, S. Knecht, S. Potz, M. Kerschensteiner, and T. Misgeld Nat. Methods 8 2011 568 570
67. J.H. Luft J. Biophys. Biochem. Cytol. 9 1961 409 414
68. A.M. Glauert, and R.H. Glauert J. Biophys. Biochem. Cytol. 4 1958 191 194
69. A.R. Spurr J. Ultrastruct. Res. 26 1969 31 43
70. H. Kushida J. Electron Microsc. 12 1963 71 73
71. W. Staübli J. Cell Biol. 16 1963 197 201
72. M. Rosenberg, P. Bartl, and J. Leško J. Ultrastruct. Res. 4 1960 298 303
73. B.E. Causton Proc. RMS 16 1981 265 267
74. B.E. Causton J.M. Polak, I.M. Varndell, Immunolabelling for Electron Microscopy 1984 Elsevier Science Publishers Amsterdam 29 36
75. B.E. Causton M. Müller, R.P. Becker, A. Boyde, J.J. Wolosewick, The Science of Biological Specimen Preparation 1985 1986 SEM Inc., AMF O'Hare 209 214
76. I.R. Gibbons Nature 184 1959 375 376
77. N. Matsko, and M. Müller J. Struct. Biol. 152 2005 92 103
78. L. Wang, B.M. Humbel, and E.W. Roubos Brain Res. Protoc. 15 2005 155 163
79. G.R. Newman, and J.A. Hobot Resin Microscopy and On-Section Immunocytochemistry 2001 Springer-Verlag Berlin, Heidelberg, New York
80. K. Luby-Phelps, G. Ning, J. Fogerty, and J.C. Besharse J. Histochem. Cytochem. 51 2003 271 274
81. K. Bell, S. Mitchell, D. Paultre, M. Posch, and K. Oparka Plant Physiol. 161 2013 1595 1603
82. U. Riehle Über die Vitrifizierung verdünnter wässriger Lösungen 1968 Federal Institute of Technology (ETH) Zürich
83. M. Müller, and H. Moor J.P. Revel, T. Barnard, G.H. Haggis, Science of Biological Specimen Preparation 1983 1984 SEM Inc., AMF O'Hare 131 138
84. H. Moor R.A. Steinbrecht, K. Zierold, Cryotechniques in Biological Electron Micoscopy 1987 Springer-Verlag Berlin, Heidelberg 175 191
85. D. Studer, M. Michel, M. Wohlwend, E.B. Hunziker, and M.D. Buschmann J. Microsc. 179 1995 321 332
86. D. Studer, W. Graber, A. Al-Amoudi, and P. Eggli J. Microsc. 203 2001 285
87. A. Van Harreveld, J. Crowell, and S.K. Malhotra J. Cell Biol. 25 1965 117 137
88. H. Fernández-Morán Science 129 1959 1284 1285
89. H. Fernández-Morán Ann. N. Y. Acad. Sci. 85 1960 689 713
90. M. Müller, T. Marti, S. Kriz, in: P. Brederoo, W. de Priester (Eds.), Proc. 7th Eur. Congr. Electron Microsc., The Hague, 1980, pp. 720-721.
91. W. Kukulski, M. Schorb, S. Welsch, A. Picco, M. Kaksonen, and J.A.G. Briggs Methods Cell Biol. 111 2012 235 257
92. S.J. Nixon, R.I. Webb, M. Floetenmeyer, N. Schieber, H.P. Lo, and R.G. Parton Traffic 10 2009 131 136
93. W. Kukulski, M. Schorb, S. Welsch, A. Picco, M. Kaksonen, and J.A.G. Briggs J. Cell Biol. 192 2011 111 119
94. C.J. Peddie, K. Blight, E. Wilson, C. Melia, J. Marrison, R. Carzaniga, M.-C. Domart, P. O'Toole, B. Larijani, and L.M. Collinson Ultramicroscopy 2014 10.1016/j.ultramic.2014.1002.1001i
95. S. Watanabe, A. Punge, G. Hollopeter, K.I. Willig, R.J. Hobson, M.W. Davis, S.W. Hell, and E.M. Jorgensen Nat. Methods 8 2011 80 84
96. S. Watanabe, and E.M. Jorgensen Methods Cell Biol. 111 2012 283 306
97. P. Walther, and A. Ziegler J. Microsc. 208 2002 3 10
98. C. Buser, and P. Walther J. Microsc. 230 2008 268 277
99. D. Studer, M. Chiquet, and E.B. Hunziker J. Struct. Biol. 117 1996 81 85
100. D.A. Lennette Am. J. Clin. Pathol. 69 1978 647 648
101. J. Rodriguez, and F. Deinhardt Virology 12 1960 316 317
102. K.L. McDonald, and R.I. Webb J. Microsc. 243 2011 227 233
103. W. Bernhard J. Ultrastruct. Res. 27 1969 250 265
104. E.J. Behrman J.P. Revel, T. Barnard, G.H. Haggis, The Science of Biological Specimen Preparation 1983 1984 SEM Inc., AMF O'Hare IL 60666 1 5
105. P. Maupin-Szamier, and T.D. Pollard J. Cell Biol. 77 1978 837 853
106. D.L. White, S.B. Andrews, J.W. Faller, and R.J. Barrnett Biochim. Biophys. Acta 436 1976 577 592
107. B.M. Humbel A. Cavalier, D. Spehner, B.M. Humbel, Handbook for Cryo-Preparation Methods for Electron Microscopy 2008 CRC Press Inc. Boca Raton, USA 320 341
108. Y.-D. Stierhof, E. van Donselaar, H. Schwarz, and B.M. Humbel A. Cavalier, D. Spehner, B.M. Humbel, Handbook for Cryo-Preparation Methods for Electron Microscopy 2008 CRC Press Inc. Boca Raton, USA 343 365
109. M. Perkovic, M. Kunz, U. Endesfelder, S. Bunse, C. Wigge, Z. Yu, V.-V. Hodirnau, M.P. Scheffer, A. Seybert, S. Malkusch, E.M. Schuman, M. Heilemann, and A.S. Frangakis J. Struct. Biol. 186 2014 205 213
110. K.T. Tokuyasu, A.H. Dutton, B. Geiger, and S.J. Singer Proc. Natl. Acad. Sci. U.S.A. 78 1981 7619 7623
111. K. Zierold Scanning Electron Microsc. 1982 1205 1214
112. J. Dubochet, A.W. McDowall, B. Menge, E.N. Schmid, and K.G. Lickfeld J. Bacteriol. 155 1983 381 390
113. P. Frederik, W.M. Busing, and W.M.A. Hax J. Microsc. 126 1982 RP1 RP2
114. M.F. Wendt-Gallitelli, P. Stohr, H. Wolburg, and W. Schlote Scanning Electron Microsc. 1980 499 509
115. A. Al-Amoudi, L.P.O. Norlen, and J. Dubochet J. Struct. Biol. 148 2004 131 135
116. B. Zuber, M. Haenni, T. Ribeiro, K. Minnig, F. Lopes, P. Moreillon, and J. Dubochet J. Bacteriol. 188 2006 6652 6660
117. J. Dubochet, A. Al-Amoudi, C. Bouchet-Marquis, M. Eltsov, and B. Zuber A. Cavalier, D. Spehner, B.M. Humbel, Handbook for Cryo-Preparation Methods for Electron Microscopy 2008 CRC Press Inc. Boca Raton, USA 255 289
118. A. Sartori, R. Gatz, F. Beck, A. Kossel, A.P. Leis, W. Baumeister, and J.M. Plitzko Microsc. Microanal. 11 2005 16 17
119. H. Iijima, Y. Fukuda, Y. Arai, S. Terakawa, N. Yamamoto, and K. Nagayama J. Struct. Biol. 185 2014 107 115
120. W.E. Moerner, and M. Orrit Science 283 1999 1670 1676
121. M. Gruska, O. Medalia, W. Baumeister, and A. Leis J. Struct. Biol. 161 2008 384 392
122. A. Rigort, F.J.B. Baüerlein, A. Leis, M. Gruska, C. Hoffmann, T. Laugks, U. Böhm, M. Eibauer, H. Gnaegi, W. Baumeister, and J.M. Plitzko J. Struct. Biol. 172 2010 169 179
123. C. Hagen, S. Werner, S. Carregal-Romero, A.N. Malhas, B.G. Klupp, P. Guttmann, S. Rehbein, K. Henzler, T.C. Mettenleiter, D.J. Vaux, W.J. Parak, G. Schneider, and K. Grünewald Ultramicroscopy 146 2014 46 54
124. Y. Fukuda, N. Schrod, M. Schaffer, L.R. Feng, W. Baumeister, and V. Lucic Ultramicroscopy 143 2014 15 23
125. S. Jones, S.K. Chapman, P.R. Crocker, G. Carson, and D.A. Levison J. Clin. Pathol. 35 1982 425 429
126. M.A. Karreman, A.V. Agronskaia, E.G. van Donselaar, K. Vocking, F. Fereidouni, B.M. Humbel, C.T. Verrips, A.J. Verkleij, and H.C. Gerritsen J. Struct. Biol. 180 2012 382 386
127. H. Iijima, H. Minoda, Y. Arai, Y. Kaneko, K. Nagayama, An electron-photon hybrid microscope for on-line CLEM, Gordon Research Conference on 3DEM, Il Ciocco, Italy, 2010.
128. I. Solomonov, D. Talmi-Frank, Y. Milstein, S. Addadi, A. Aloshin, and I. Sagi Sci. Rep. 4 2014 5987 5910.1038/srep05987
129. T. Kinoshita, Y. Mori, K. Hirano, S. Sugimoto, K.-I. Okuda, S. Matsumoto, T. Namiki, T. Ebihara, M. Kawata, H. Nishiyama, M. Sato, M. Suga, K. Higashiyama, K. Sonomoto, Y. Mizunoe, S. Nishihara, and C. Sato Microsc. Microanal. 20 2014 469 483
130. H. Nishiyama, M. Koizumi, K. Ogawa, S. Kitamura, Y. Konyuba, Y. Watanabe, N. Ohbayashi, M. Fukuda, M. Suga, and C. Sato Ultramicroscopy 147 2014 86 97
131. N. Liv, I. Lazić, P. Kruit, and J.P. Hoogenboom Ultramicroscopy 143 2014 93 99
132. N. Liv, A.C. Zonnevylle, A.C. Narvaez, A.P.J. Effting, P.W. Voorneveld, M.S. Lucas, J.C. Hardwick, R.A. Wepf, P. Kruit, and J.P. Hoogenboom PLoS ONE 8 2013 e55707
133. A.C. Zonnevylle, R.F.C. van Tol, N. Liv, A.C. Narvaez, A.P.J. Effting, P. Kruit, and J.P. Hoogenboom J. Microsc. 252 2013 48 70
134. C.J. Peddie, N. Liv, J.P. Hoogenboom, and L.M. Collinson Methods Cell Biol. 124 2014 363 389
135. K.D. Micheva, and S.J. Smith Neuron 55 2007 25 36
136. D. Oberti, M.A. Kirschmann, and R.H.R. Hahnloser Front. Neurosci. 5 2011 1 8
137. W.-J. Wang, H.G. Tay, R. Soni, G.S. Perumal, M.G. Goll, F.P. Macaluso, J.M. Asara, J.D. Amack, and M.-F.B. Tsou Nat. Cell Biol. 15 2013 591 601
138. M. Husain, C. Thomas, M. Kirschmann, D. Oberti, and R. Hahnloser Microsc. Microanal. 17 2011 242 243
139. C.L. Schwartz, V.I. Sarbash, F.I. Ataullakhanov, J.R. McIntosh, and D. Nicastro J. Microsc. 227 2007 98 109
140. L.F. Van Driel, J.A. Valentijn, K.M. Valentijn, R.I. Koning, and A.J. Koster Eur. J. Cell Biol. 88 2009 669 684
141. C. Nolte, M. Matyash, T. Pivneva, C.G. Schipke, C. Ohlemeyer, U.-K. Hanisch, F. Kirchhoff, and H. Kettenmann Glia 33 2001 72 86
142. M.T. Otten, D.J. Stenzel, D.R. Cousens, B.M. Humbel, J.L.M. Leunissen, Y.-D. Stierhof, and W.M. Busing Scanning 14 1992 282 289
143. A.E. Yakushevska, M.N. Lebbink, W.J.C. Geerts, L. Spek, E.G. van Donselaar, K.A. Jansen, B.M. Humbel, J.A. Post, A.J. Verkleij, and A.J. Koster J. Struct. Biol. 159 2007 381 391
144. E.A. Smith, B.P. Cinquin, M. Do, G. McDermott, M.A. Le Gros, and C.A. Larabell Ultramicroscopy 143 2014 33 40
145. R. Carzaniga, M.-C. Domart, E. Duke, and L.M. Collinson Methods Cell Biol. 124 2014 151 178
146. D.B. Carlson, J. Gelb, V. Palshin, and J.E. Evans Microsc. Microanal. 19 2013 22 29
147. S. Roudeau, A. Carmona, L. Perrin, and R. Ortega Anal. Bioanal. Chem. 406 2014 6979 6991
148. Y. Takado, G. Knott, B.M. Humbel, S. Escrig, M. Mojgan, A. Meibom, and A. Comment Nanomed. NBM 11 2015 239 245