Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells

European Journal of Cell Biology

Volumn 88, Issue 11, 2009, Pages 669-684

  van Driel, Linda F ^a   Valentijn, Jack A ^a   Valentijn, Karine M ^a   Koning, Roman I ^a   Koster, Abraham J ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Correlative microscopy; Cryo electron microscopy; Cryo electron tomography; Cryo fluorescence microscopy; Endothelial cells; Mitochondria

Indexed keywords

ARTICLE; CELL LABELING; CELL ULTRASTRUCTURE; CRYO ELECTRON TOMOGRAPHY; CRYO FLUORESCENCE MICROSCOPY; CRYOELECTRON MICROSCOPY; ENDOTHELIUM CELL; HUMAN; HUMAN CELL; IMAGE ANALYSIS; IMAGE DISPLAY; IMAGING; IMAGING SYSTEM; MITOCHONDRIAL MEMBRANE; MITOCHONDRION; PRIORITY JOURNAL;

CELLS, CULTURED; CRYOELECTRON MICROSCOPY; ELECTRON MICROSCOPE TOMOGRAPHY; ENDOTHELIAL CELLS; HUMANS; MICROSCOPY, FLUORESCENCE; MITOCHONDRIA; UMBILICAL CORD;

EID: 69949083343     PISSN: 01719335     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejcb.2009.07.002     Document Type: Article

References (48)

1. Abramoff, M.D., Magelhaes, P.J., Ram, S.J., 2004. Image Processing with ImageJ. Biophotonics International, Pittsfield, MA, USA, pp. 36-42.
2. Agronskaia A.V., Valentijn J.A., van Driel L.F., Schneijdenberg C.T., Humbel B.M., van Bergen En Henegouwen P.M., Verkleij A.J., Koster A.J., and Gerritsen H.C. Integrated fluorescence and transmission electron microscopy. J. Struct. Biol. 164 (2008) 183-189
3. Al-Amoudi A., Chang J.J., Leforestier A., McDowall A., Salamin L.M., Norlen L.P., Richter K., Blanc N.S., Studer D., and Dubochet J. Cryo-electron microscopy of vitreous sections. EMBO J. 23 (2004) 3583-3588
4. Al-Amoudi A., Studer D., and Dubochet J. Cutting artefacts and cutting process in vitreous sections for cryo-electron microscopy. J. Struct. Biol. 150 (2005) 109-121
5. Babich V., Meli A., Knipe L., Dempster J.E., Skehel P., Hannah M.J., and Carter T. Selective release of molecules from Weibel-Palade bodies during a lingering kiss. Blood 111 (2008) 5282-5290
6. Briegel A., Ding H.J., Li Z., Werner J., Gitai Z., Dias D.P., Jensen R.B., and Jensen G.J. Location and architecture of the Caulobacter crescentus chemoreceptor array. Mol. Microbiol. 69 (2008) 30-41
7. Cyrklaff M., Linaroudis A., Boicu M., Chlanda P., Baumeister W., Griffiths G., and Krijnse-Locker J. Whole cell cryo-electron tomography reveals distinct disassembly intermediates of vaccinia virus. PLoS ONE 2 (2007) e420
8. Daems W.T., and Wisse E. Shape and attachment of the cristae mitochondriales in mouse hepatic cell mitochondria. J. Ultrastruct. Res. 16 (1966) 123-140
9. Dubochet J., Adrian M., Chang J.J., Homo J.C., Lepault J., McDowall A.W., and Schultz P. Cryo-electron microscopy of vitrified specimens. Q. Rev. Biophys. 21 (1988) 129-228
10. Dubochet J., Zuber B., Eltsov M., Bouchet-Marquis C., Al-Amoudi A., and Livolant F. How to "read" a vitreous section. Methods Cell Biol. 79 (2007) 385-406
11. Echlin P. Low-Temperature Light Microscopy. Low-Temperature Microscopy and Analysis (1992), Plenum Press, New York pp. 265-293
12. Frank J., Wagenknecht T., McEwen B.F., Marko M., Hsieh C.E., and Mannella C.A. Three-dimensional imaging of biological complexity. J. Struct. Biol. 138 (2002) 85-91
13. Frey T.G., and Mannella C.A. The internal structure of mitochondria. Trends Biochem. Sci. 25 (2000) 319-324
14. Giepmans B.N., Deerinck T.J., Smarr B.L., Jones Y.Z., and Ellisman M.H. Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots. Nat. Methods 2 (2005) 743-749
15. Gruska M., Medalia O., Baumeister W., and Leis A. Electron tomography of vitreous sections from cultured mammalian cells. J. Struct. Biol. 161 (2008) 384-392
16. Koning R.I., and Koster A.J. Cryo-electron tomography in biology and medicine. Ann. Anat. (2009) 10.1016/j.aanat.2009.04.003 (E-pub ahead of print)
17. Koning R.I., Zovko S., Barcena M., Oostergetel G.T., Koerten H.K., Galjart N., Koster A.J., and Mommaas A.M. Cryo electron tomography of vitrified fibroblasts: microtubule plus ends in situ. J. Struct. Biol. 161 (2008) 459-468
18. Koster A.J., and Klumperman J. Electron microscopy in cell biology: integrating structure and function. Nat. Rev. Mol. Cell Biol. Suppl. (2003) SS6-SS10
19. Koster A.J., Grimm R., Typke D., Hegerl R., Stoschek A., Walz J., and Baumeister W. Perspectives of molecular and cellular electron tomography. J. Struct. Biol. 120 (1997) 276-308
20. Kremer J.R., Mastronarde D.N., and McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116 (1996) 71-76
21. Kurner J., Medalia O., Linaroudis A.A., and Baumeister W. New insights into the structural organization of eukaryotic and prokaryotic cytoskeletons using cryo-electron tomography. Exp. Cell Res. 301 (2004) 38-42
22. Leis A., Rockel B., Andrees L., and Baumeister W. Visualizing cells at the nanoscale. Trends Biochem. Sci. 34 (2009) 60-70
23. Lippincott-Schwartz J., and Manley S. Putting super-resolution fluorescence microscopy to work. Nat. Methods 6 (2009) 21-23
24. Luccardini C., Yakovlev A., Gaillard S., van 't Hoff M., Alberola A.P., Mallet J.M., Parak W.J., Feltz A., and Oheim M. Getting across the plasma membrane and beyond: intracellular uses of colloidal semiconductor nanocrystals. J. Biomed. Biotechnol. (2007) (Article ID 68963)
25. Lucic V., Kossel A.H., Yang T., Bonhoeffer T., Baumeister W., and Sartori A. Multiscale imaging of neurons grown in culture: from light microscopy to cryo-electron tomography. J. Struct. Biol. 160 (2007) 146-156
26. Makita T., Hatsuoka M., Watanabe J., Sasaki K., and Kiwaki S. Fluorescence microscopy of hydrated frozen-sections under liquid-nitrogen. Cryo-Letters 1 (1980) 438-444
27. Mannella C.A. Structural diversity of mitochondria: functional implications. Ann. N.Y. Acad. Sci. 1147 (2008) 171-179
28. Mannella C.A., Pfeiffer D.R., Bradshaw P.C., Moraru I.I., Slepchenko B., Loew L.M., Hsieh C.E., Buttle K., and Marko M. Topology of the mitochondrial inner membrane: dynamics and bioenergetic implications. IUBMB Life 52 (2001) 93-100
29. Marko M., Hsieh C., Schalek R., Frank J., and Mannella C. Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy. Nat. Methods 4 (2007) 215-217
30. McGrath J.J. Temperature-controlled cryogenic light microscopy - an introduction to cryomicroscopy. In: Grout B.W.W., and Morris G.J. (Eds). The Effects of Low Temperature on Biological Systems (1987), Edward Arnold, London 234-267
31. Medintz I.L., Uyeda H.T., Goldman E.R., and Mattoussi H. Quantum dot bioconjugates for imaging, labelling and sensing. Nat. Mater. 4 (2005) 435-446
32. Nicastro D., Frangakis A.S., Typke D., and Baumeister W. Cryo-electron tomography of Neurospora mitochondria. J. Struct. Biol. 129 (2000) 48-56
33. Nisman R., Dellaire G., Ren Y., Li R., and Bazett-Jones D.P. Application of Quantum dots as probes for correlative fluorescence, conventional, and energy-filtered transmission electron microscopy. J. Histochem. Cytochem. 52 (2004) 13-18
34. Palade G.E. The fine structure of mitochondria. Anat. Rec. 114 (1952) 427-451
35. Romani de Wit T., Rondaij M.G., Hordijk P.L., Voorberg J., and van Mourik J.A. Real-time imaging of the dynamics and secretory behavior of Weibel-Palade bodies. Arterioscler. Thromb. Vasc. Biol. 23 (2003) 755-761
36. Sartori A., Gatz R., Beck F., Rigort A., Baumeister W., and Plitzko J.M. Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography. J. Struct. Biol. 160 (2007) 135-145
37. Schwartz C.L., Sarbash V.I., Ataullakhanov F.I., McIntosh J.R., and Nicastro D. Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. J. Microsc. 227 (2007) 98-109
38. Sun M.G., Williams J., Munoz-Pinedo C., Perkins G.A., Brown J.M., Ellisman M.H., Green D.R., and Frey T.G. Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat. Cell Biol. 9 (2007) 1057-1065
39. Tymianski M., Bernstein G.M., Abdel-Hamid K.M., Sattler R., Velumian A., Carlen P.L., Razavi H., and Jones O.T. A novel use for a carbodiimide compound for the fixation of fluorescent and non-fluorescent calcium indicators in situ following physiological experiments. Cell Calcium 21 (1997) 175-183
40. Valentijn J.A., van Driel L.F., Agronskaia A.V., Knoops K., Koning R.I., Barcena M., Gerritsen H.C., and Koster A.J. Novel methods for cryo-fluorescence microscopy permitting correlative cryo-electron microscopy. Microsc. Microanalysis 14 Suppl. 2 (2008) 1314-1315 (Abstract)
41. Valentijn, J.A., van Driel, L.F., Koster, A.J., in press. Correlative light and electron microscopy: getting the best of two worlds. In: Salzer, R. (Ed.), Biomedical Imaging: Principals and Applications. Wiley-Interscience.
42. Valentijn K.M., Valentijn J.A., Jansen K.A., and Koster A.J. A new look at Weibel-Palade body structure in endothelial cells using electron tomography. J. Struct. Biol. 161 (2008) 447-458
43. van Driel L.F., Knoops K., Koster A.J., and Valentijn J.A. Fluorescent labeling of resin-embedded sections for correlative electron microscopy using tomography-based contrast enhancement. J. Struct. Biol. 161 (2008) 372-383
44. van Rijnsoever C., Oorschot V., and Klumperman J. Correlative light-electron microscopy (CLEM) combining live-cell imaging and immunolabeling of ultrathin cryosections. Nat. Methods 5 (2008) 973-980
45. Verhaeghe E.F., Fraysse A., Guerquin-Kern J.L., Wu T.D., Deves G., Mioskowski C., Leblanc C., Ortega R., Ambroise Y., and Potin P. Microchemical imaging of iodine distribution in the brown alga Laminaria digitata suggests a new mechanism for its accumulation. J. Biol. Inorg. Chem. 13 (2008) 257-269
46. Verkade P. Moving EM: the rapid transfer system as a new tool for correlative light and electron microscopy and high throughput for high-pressure freezing. J. Microsc. 230 (2008) 317-328
47. Vicidomini G., Gagliani M.C., Canfora M., Cortese K., Frosi F., Santangelo C., Di Fiore P.P., Boccacci P., Diaspro A., and Tacchetti C. High data output and automated 3D correlative light-electron microscopy method. Traffic 9 (2008) 1828-1838
48. Zierold K. Cryofixation methods for ion localization in cells by electron probe microanalysis: a review. J. Microsc. 161 (1991) 357-366