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Volumn 102, Issue 7, 2015, Pages 1115-1127

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat 1

(15)  Sanderson, Michael J a   Copetti, Dario b,c   Búrquez, Alberto d   Bustamante, Enriquena d   Charboneau, Joseph L M a   Eguiarte, Luis E e   Kumar, Sudhir f   Lee, Hyun Oh g   Lee, Junki h   McMahon, Michelle b   Steele, Kelly i   Wing, Rod b,c   Yang, Tae Jin i   Zwickl, Derrick a   Wojciechowski, Martin F j  


Author keywords

Cactaceae; Cacti; Carnegiea gigantea; Inverted repeat; Ndh genes; Phylogenomics; Saguaro

Indexed keywords

CACTUS; ENZYME ACTIVITY; EVOLUTIONARY BIOLOGY; GENOME; GENOMICS; MOLECULAR ANALYSIS; PHOTOAUTOTROPHY; PHYLOGENETICS; PLASTID; SEED;

EID: 84939130705     PISSN: 00029122     EISSN: 15372197     Source Type: Journal    
DOI: 10.3732/ajb.1500184     Document Type: Article
Times cited : (118)

References (93)
  • 1
    • 0344719444 scopus 로고    scopus 로고
    • Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus
    • Adams, K. L., and J. D. Palmer. 2003. Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus. Molecular Phylogenetics and Evolution29: 380-395
    • (2003) Molecular Phylogenetics and Evolution , vol.29 , pp. 380-395
    • Adams, K.L.1    Palmer, J.D.2
  • 4
    • 79957873740 scopus 로고    scopus 로고
    • Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
    • Blazier, J., M. M. Guisinger, and R. K. Jansen. 2011. Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae). Plant Molecular Biology76: 263–272
    • (2011) Plant Molecular Biology , vol.76 , pp. 263-272
    • Blazier, J.1    Guisinger, M.M.2    Jansen, R.K.3
  • 5
    • 84874682437 scopus 로고    scopus 로고
    • Plastid genome evolution across the genus Cuscuta (Convolvulaceae): Two clades within subgenus Grammica exhibit extensive gene loss
    • Braukmann, T., M. Kuzmina, and S. Stefanovic. 2013. Plastid genome evolution across the genus Cuscuta (Convolvulaceae): Two clades within subgenus Grammica exhibit extensive gene loss. Journal of Experimental Botany64: 977–989
    • (2013) Journal of Experimental Botany , vol.64 , pp. 977-989
    • Braukmann, T.1    Kuzmina, M.2    Stefanovic, S.3
  • 6
    • 84859941763 scopus 로고    scopus 로고
    • Plastid genome evolution in mycoheterotrophic Ericaceae
    • Braukmann, T., and S. Stefanovic. 2012. Plastid genome evolution in mycoheterotrophic Ericaceae. Plant Molecular Biology79: 5-20
    • (2012) Plant Molecular Biology , vol.79 , pp. 5-20
    • Braukmann, T.1    Stefanovic, S.2
  • 7
    • 67349254201 scopus 로고    scopus 로고
    • Loss of all plastid ndh genes in Gnetales and conifers: Extent and evolutionary signifi cance for the seed plant phylogeny
    • Braukmann, T. W. A., M. Kuzmina, and S. Stefanovic. 2009. Loss of all plastid ndh genes in Gnetales and conifers: Extent and evolutionary signifi cance for the seed plant phylogeny. Current Genetics55: 323-337
    • (2009) Current Genetics , vol.55 , pp. 323-337
    • Braukmann, T.1    Kuzmina, M.2    Stefanovic, S.3
  • 8
    • 0032481317 scopus 로고    scopus 로고
    • Identifi cation of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes
    • Burrows, P. A., L. A. Sazanov, Z. Svab, P. Maliga, and P. J. Nixon. 1998. Identifi cation of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes. Th e EMBO Journal17: 868–876
    • (1998) Th E EMBO Journal , vol.17 , pp. 868-876
    • Burrows, P.A.1    Sazanov, L.A.2    Svab, Z.3    Maliga, P.4    Nixon, P.J.5
  • 9
    • 78649763828 scopus 로고    scopus 로고
    • Geographic variation in reproductive success of Stenocereus thurberi (Cactaceae): Eff ects of pollination timing and pollinator guild
    • Bustamante, E., A. Casas, and A. Burquez. 2010. Geographic variation in reproductive success of Stenocereus thurberi (Cactaceae): Eff ects of pollination timing and pollinator guild. American Journal of Botany97: 2020-2030
    • (2010) American Journal of Botany , vol.97 , pp. 2020-2030
    • Bustamante, E.1    Casas, A.2    Burquez, A.3
  • 10
    • 65349104518 scopus 로고    scopus 로고
    • Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions
    • Cai, Z. Q., M. Guisinger, H. G. Kim, E. Ruck, J. C. Blazier, V. Mcmurtry, J. V. Kuehl, et al. 2008. Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. Journal of Molecular Evolution67: 696-704
    • (2008) Journal of Molecular Evolution , vol.67 , pp. 696-704
    • Cai, Z.Q.1    Guisinger, M.2    Kim, H.G.3    Ruck, E.4    Blazier, J.C.5    McMurtry, V.6    Kuehl, J.V.7
  • 11
    • 84926660709 scopus 로고    scopus 로고
    • Genetic enablers underlying the clustered evolutionary origins of C 4 photosynthesis in angiosperms
    • Christin, P. A., M. Arakaki, C. P. Osborne, and E. J. Edwards. 2015. Genetic enablers underlying the clustered evolutionary origins of C 4 photosynthesis in angiosperms. Molecular Biology and Evolution32: 846-858
    • (2015) Molecular Biology and Evolution , vol.32 , pp. 846-858
    • Christin, P.A.1    Arakaki, M.2    Osborne, C.P.3    Edwards, E.J.4
  • 12
    • 3543051830 scopus 로고    scopus 로고
    • MAUVE: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling, A. C. E., B. Mau, F. R. Blattner, and N. T. Perna. 2004. MAUVE: Multiple alignment of conserved genomic sequence with rearrangements. Genome Research14: 1394-1403
    • (2004) Genome Research , vol.14 , pp. 1394-1403
    • Darling, A.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 13
    • 0027948710 scopus 로고
    • A chloroplast DNA phylogeny of the Caryophyllales based on structural and inverted repeat restriction site variation
    • Downie, S. R., and J. D. Palmer. 1994. A chloroplast DNA phylogeny of the Caryophyllales based on structural and inverted repeat restriction site variation. Systematic Botany19: 236-252
    • (1994) Systematic Botany , vol.19 , pp. 236-252
    • Downie, S.R.1    Palmer, J.D.2
  • 14
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle, J., and J. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin19: 11-15
    • (1987) Phytochemical Bulletin , vol.19 , pp. 11-15
    • Doyle, J.1    Doyle, J.2
  • 15
    • 84899946327 scopus 로고    scopus 로고
    • Th e keystone saguaro (Carnegiea gigantea, Cactaceae): A review of its ecology, associations, reproduction, limits, and demographics
    • Drezner, T. D. 2014. Th e keystone saguaro (Carnegiea gigantea, Cactaceae): A review of its ecology, associations, reproduction, limits, and demographics. Plant Ecology215: 581-595
    • (2014) Plant Ecology , vol.215 , pp. 581-595
    • Drezner, T.D.1
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research32: 1792-1797
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 21344444797 scopus 로고    scopus 로고
    • Basal cactus phylogeny: Implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form
    • Edwards, E. J., R. Nyff eler, and M. J. Donoghue. 2005. Basal cactus phylogeny: Implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form. American Journal of Botany92: 1177-1188
    • (2005) American Journal of Botany , vol.92 , pp. 1177-1188
    • Edwards, E.J.1    Nyff Eler, R.2    Donoghue, M.J.3
  • 19
    • 0024944822 scopus 로고
    • Eff ect of nurse plants on the microhabitat and growth of cacti
    • Franco, A. C., and P. S. Nobel. 1989. Eff ect of nurse plants on the microhabitat and growth of cacti. Journal of Ecology77: 870-886
    • (1989) Journal of Ecology , vol.77 , pp. 870-886
    • Franco, A.C.1    Nobel, P.S.2
  • 20
    • 57749192264 scopus 로고    scopus 로고
    • Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer
    • Goremykin, V. V., F. Salamini, R. Velasco, and R. Viola. 2009. Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer. Molecular Biology and Evolution26: 99-110
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 99-110
    • Goremykin, V.V.1    Salamini, F.2    Velasco, R.3    Viola, R.4
  • 22
    • 41149113024 scopus 로고    scopus 로고
    • Chloroplast DNA insertions into the nuclear genome of rice: Th e genes, sites and ages of insertion involved
    • Guo, X., S. Ruan, W. Hu, D. Ca, and L. Fan. 2008. Chloroplast DNA insertions into the nuclear genome of rice: Th e genes, sites and ages of insertion involved. Functional & Integrative Genomics8: 101-108
    • (2008) Functional &Amp; Integrative Genomics , vol.8 , pp. 101-108
    • Guo, X.1    Ruan, S.2    Hu, W.3    Ca, D.4    Fan, L.5
  • 23
    • 84900802154 scopus 로고    scopus 로고
    • BLESS: Bloom fi lter-based error correction solution for high-throughput sequencing reads
    • Heo, Y., X. L. Wu, D. M. Chen, J. Ma, and W. M. Hwu. 2014. BLESS: Bloom fi lter-based error correction solution for high-throughput sequencing reads. Bioinformatics30: 1354-1362
    • (2014) Bioinformatics , vol.30 , pp. 1354-1362
    • Heo, Y.1    Wu, X.L.2    Chen, D.M.3    Ma, J.4    Hwu, W.M.5
  • 24
    • 84899938368 scopus 로고    scopus 로고
    • Beyond aridifi cation: Multiple explanations for the elevated diversifi cation of cacti in the New World Succulent Biome
    • Hernández-Hernández, T., J. W. Brown, B. O. Schlumpberger, L. E. Eguiarte, and S. Magallón. 2014. Beyond aridifi cation: Multiple explanations for the elevated diversifi cation of cacti in the New World Succulent Biome. New Phytologist202: 1382-1397
    • (2014) New Phytologist , vol.202 , pp. 1382-1397
    • Hernández-Hernández, T.1    Brown, J.W.2    Schlumpberger, B.O.3    Eguiarte, L.E.4    Magallón, S.5
  • 27
    • 0033849066 scopus 로고    scopus 로고
    • Targeted inactivation of the plastid ndhB gene in tobacco results in an enhanced sensitivity of photosynthesis to moderate stomatal closure
    • Horv á th, E. M., S. O. Peter, T. Joët, D. Rumeau, L. Cournac, G. V. Horv á th, T. A. Kavanagh, et al. 2000. Targeted inactivation of the plastid ndhB gene in tobacco results in an enhanced sensitivity of photosynthesis to moderate stomatal closure. Plant Physiology123: 1337-1350
    • (2000) Plant Physiology , vol.123 , pp. 1337-1350
    • Horv Á Th, E.M.1    Peter, S.O.2    Joët, T.3    Rumeau, D.4    Cournac, L.5    Horv Á Th, G.V.6    Kavanagh, T.A.7
  • 28
    • 27244461126 scopus 로고    scopus 로고
    • Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes
    • Huang, C. Y., N. Grunheit, N. Ahmadinejad, J. N. Timmis, and W. Martin. 2005. Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes. Plant Physiology138: 1723-1733
    • (2005) Plant Physiology , vol.138 , pp. 1723-1733
    • Huang, C.Y.1    Grunheit, N.2    Ahmadinejad, N.3    Timmis, J.N.4    Martin, W.5
  • 29
    • 80052879596 scopus 로고    scopus 로고
    • Structure of the chloroplast NADH dehydrogenase-like complex: Nomenclature for nuclearencoded subunits
    • Ifuku, K., T. Endo, T. Shikanai, and E. M. Aro. 2011. Structure of the chloroplast NADH dehydrogenase-like complex: Nomenclature for nuclearencoded subunits. Plant & Cell Physiology52: 1560-1568
    • (2011) Plant &Amp; Cell Physiology , vol.52 , pp. 1560-1568
    • Ifuku, K.1    Endo, T.2    Shikanai, T.3    Aro, E.M.4
  • 30
    • 85011320157 scopus 로고    scopus 로고
    • A well-supported phylogenetic framewrok for the monocot order Alismatales reveals multiple losses of the plastid NADH dehydrogenase complex and a strong long-branch effect
    • P. Wilkin and S. J. Mayo [eds.], Cambridge University Press, Cambridge, UK
    • Iles, W. J. D., S. Y. Smith, and S. W. Graham. 2013. A well-supported phylogenetic framewrok for the monocot order Alismatales reveals multiple losses of the plastid NADH dehydrogenase complex and a strong long-branch effect. In P. Wilkin and S. J. Mayo [eds.], Early events in monocot evolution, 1–28 Cambridge University Press, Cambridge, UK
    • (2013) Early Events in Monocot Evolution , pp. 1-28
    • Iles, W.1    Smith, S.Y.2    Graham, S.W.3
  • 32
  • 33
    • 84935446215 scopus 로고    scopus 로고
    • Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species
    • Kim, K., S. Lee, J. Lee, H. Lee, H. Joh, N. Kim, H. Park, and T. Yang. 2015. Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species. PLoS One 10 (6): e0117159
    • (2015) Plos One
    • Kim, K.1    Lee, S.2    Lee, J.3    Lee, H.4    Joh, H.5    Kim, N.6    Park, H.7    Yang, T.8
  • 36
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., and S. L. Salzberg. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods9: 357-359
    • (2012) Nature Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 37
    • 84883830638 scopus 로고    scopus 로고
    • Complexities and protein complexes in the antimycin A-sensitive pathway of cyclic electron fl ow in plants
    • Leister, D., and T. Shikanai. 2013. Complexities and protein complexes in the antimycin A-sensitive pathway of cyclic electron fl ow in plants. Frontiers in Plant Science4: 9040
    • (2013) Frontiers in Plant Science , vol.4
    • Leister, D.1    Shikanai, T.2
  • 39
    • 79957831775 scopus 로고    scopus 로고
    • Th e origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome
    • Lloyd, A. H., and J. N. Timmis. 2011. Th e origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome. Molecular Biology and Evolution28: 2019-2028
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2019-2028
    • Lloyd, A.H.1    Timmis, J.N.2
  • 40
    • 47249126308 scopus 로고    scopus 로고
    • Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp ancestrale —A wild ancestor of cultivated buckwheat
    • Logacheva, M. D., T. H. Samigullin, A. Dhingra, and A. A. Penin. 2008. Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp ancestrale —A wild ancestor of cultivated buckwheat. BMC Plant Biology8: 59
    • (2008) BMC Plant Biology , vol.8
    • Logacheva, M.D.1    Samigullin, T.H.2    Dhingra, A.3    Penin, A.A.4
  • 41
    • 84883584463 scopus 로고    scopus 로고
    • OrganellarGenomeDRAW— A suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    • Lohse, M., O. Drechsel, S. Kahlau, and R. Bock. 2013. OrganellarGenomeDRAW— A suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Research41: W575-W581
    • (2013) Nucleic Acids Research , vol.41 , pp. W575-W581
    • Lohse, M.1    Drechsel, O.2    Kahlau, S.3    Bock, R.4
  • 42
    • 84923404983 scopus 로고    scopus 로고
    • Th e unsolved challenge to phylogenetic correlation tests for categorical characters
    • Maddison, W. P., and R. G. Fitzjohn. 2015. Th e unsolved challenge to phylogenetic correlation tests for categorical characters. Systematic Biology64: 127-136
    • (2015) Systematic Biology , vol.64 , pp. 127-136
    • Maddison, W.P.1    Fitzjohn, R.G.2
  • 46
    • 27244457663 scopus 로고    scopus 로고
    • Th e rice nuclear genome continuously integrates, shuffl es, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA fl ux
    • Matsuo, M., Y. Ito, R. Yamauchi, and J. Obokata. 2005. Th e rice nuclear genome continuously integrates, shuffl es, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA fl ux. Plant Cell17: 665-675
    • (2005) Plant Cell , vol.17 , pp. 665-675
    • Matsuo, M.1    Ito, Y.2    Yamauchi, R.3    Obokata, J.4
  • 47
    • 33750441460 scopus 로고    scopus 로고
    • Structure–function relationships in highly modifi ed shoots of Cactaceae
    • Mauseth, J. D. 2006. Structure–function relationships in highly modifi ed shoots of Cactaceae. Annals of Botany98: 901-926
    • (2006) Annals of Botany , vol.98 , pp. 901-926
    • Mauseth, J.D.1
  • 48
    • 84888008309 scopus 로고    scopus 로고
    • Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: Size, relative age and chromosomal localization
    • Michalovova, M., B. Vyskot, and E. Kejnovsky. 2013. Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: Size, relative age and chromosomal localization. Heredity111: 314–320
    • (2013) Heredity , vol.111 , pp. 314-320
    • Michalovova, M.1    Vyskot, B.2    Kejnovsky, E.3
  • 49
    • 0035056576 scopus 로고    scopus 로고
    • Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus
    • Millen, R. S., R. G. Olmstead, K. L. Adams, J. D. Palmer, N. T. Lao, L. Heggie, T. A. Kavanagh, et al. 2001. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. Plant Cell13: 645-658
    • (2001) Plant Cell , vol.13 , pp. 645-658
    • Millen, R.S.1    Olmstead, R.G.2    Adams, K.L.3    Palmer, J.D.4    Lao, N.T.5    Heggie, L.6    Kavanagh, T.A.7
  • 53
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • Muse, S. V., and B. S. Gaut. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Molecular Biology and Evolution11: 715-724
    • (1994) Molecular Biology and Evolution , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 54
    • 34250730829 scopus 로고    scopus 로고
    • Th e closest relatives of cacti: Insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae
    • Nyff eler, R. 2007. Th e closest relatives of cacti: Insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae. American Journal of Botany94: 89-101
    • (2007) American Journal of Botany , vol.94 , pp. 89-101
    • Nyff Eler, R.1
  • 55
    • 77149165095 scopus 로고    scopus 로고
    • Disintegrating Portulacaceae: A new familial classifi cation of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data
    • Nyff eler, R., and U. Eggli. 2010. Disintegrating Portulacaceae: A new familial classifi cation of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data. Taxon59: 227-240
    • (2010) Taxon , vol.59 , pp. 227-240
    • Nyff Eler, R.1    Eggli, U.2
  • 56
    • 0028097770 scopus 로고
    • Detecting correlated evolution on phylogenies—A generalmethod for the comparative-analysis of discrete characters
    • Pagel, M. 1994. Detecting correlated evolution on phylogenies—A generalmethod for the comparative-analysis of discrete characters. Proceedings of the Royal Society of London, B, Biological Sciences255: 37-45
    • (1994) Proceedings of the Royal Society of London, B, Biological Sciences , vol.255 , pp. 37-45
    • Pagel, M.1
  • 57
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • Pagel, M., A. Meade, and D. Barker. 2004. Bayesian estimation of ancestral character states on phylogenies. Systematic Biology53: 673-684
    • (2004) Systematic Biology , vol.53 , pp. 673-684
    • Pagel, M.1    Meade, A.2    Barker, D.3
  • 58
    • 0000168225 scopus 로고
    • Chloroplast DNA evolution among legumes—Loss of a large inverted repeat occurred prior to other sequence rearrangements
    • Palmer, J. D., B. Osorio, J. Aldrich, and W. F. Th ompson. 1987. Chloroplast DNA evolution among legumes—Loss of a large inverted repeat occurred prior to other sequence rearrangements. Current Genetics11: 275-286
    • (1987) Current Genetics , vol.11 , pp. 275-286
    • Palmer, J.D.1    Osorio, B.2    Aldrich, J.3    Ompson, W.F.T.4
  • 60
    • 84879832869 scopus 로고    scopus 로고
    • Th e plastid genome of Najas fl exilis: Adaptation to submersed environments is accompanied by the complete loss of the ndh complex in an aquatic angiosperm
    • Peredo, E., U. King, and D. Les. 2013. Th e plastid genome of Najas fl exilis: Adaptation to submersed environments is accompanied by the complete loss of the ndh complex in an aquatic angiosperm. PLoS One8: e68591
    • (2013) Plos One , vol.8
    • Peredo, E.1    King, U.2    Les, D.3
  • 61
    • 84862763554 scopus 로고    scopus 로고
    • Phylogeography of the cactophilic Drosophila and other arthropods associated with cactus necroses in the Sonoran Desert
    • Pfeiler, E., and T. A. Markow. 2011. Phylogeography of the cactophilic Drosophila and other arthropods associated with cactus necroses in the Sonoran Desert. Insects2: 218-231
    • (2011) Insects , vol.2 , pp. 218-231
    • Pfeiler, E.1    Markow, T.A.2
  • 62
    • 0032435287 scopus 로고    scopus 로고
    • An 85-year study of saguaro (Carnegiea gigantea) demography
    • Pierson, E. A., and R. M. Turner. 1998. An 85-year study of saguaro (Carnegiea gigantea) demography. Ecology79: 2676-2693
    • (1998) Ecology , vol.79 , pp. 2676-2693
    • Pierson, E.A.1    Turner, R.M.2
  • 63
    • 84867295598 scopus 로고    scopus 로고
    • Regional demographic trends from long-term studies of saguaro (Carnegiea gigantea) across the northern Sonoran Desert
    • Pierson, E. A., R. M. Turner, and J. L. Betancourt. 2013. Regional demographic trends from long-term studies of saguaro (Carnegiea gigantea) across the northern Sonoran Desert. Journal of Arid Environments88: 57-69
    • (2013) Journal of Arid Environments , vol.88 , pp. 57-69
    • Pierson, E.A.1    Turner, R.M.2    Betancourt, J.L.3
  • 64
    • 34548040746 scopus 로고    scopus 로고
    • Th e molecular phylogeny of Rebutia (Cactaceae) and its allies demonstrates the infl uence of paleogeography on the evolution of South American mountain cacti
    • Ritz, C. M., L. Martins, R. Mecklenburg, V. Goremykin, and F. H. Hellwig. 2007. Th e molecular phylogeny of Rebutia (Cactaceae) and its allies demonstrates the infl uence of paleogeography on the evolution of South American mountain cacti. American Journal of Botany94: 1321-1332
    • (2007) American Journal of Botany , vol.94 , pp. 1321-1332
    • Ritz, C.M.1    Martins, L.2    Mecklenburg, R.3    Goremykin, V.4    Hellwig, F.H.5
  • 65
  • 66
    • 84910132543 scopus 로고    scopus 로고
    • Th e plastid genomes of fl owering plants
    • P. Maliga [ed.]
    • Ruhlman, T. A., and R. K. Jansen. 2014. Th e plastid genomes of fl owering plants. In P. Maliga [ed.], Chloroplast biotechnology: Methods and protocols, vol. 1132, Methods in molecular biology, 3–38
    • (2014) Chloroplast Biotechnology: Methods and Protocols , vol.1132 , pp. 3-38
    • Ruhlman, T.A.1    Jansen, R.K.2
  • 69
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder, R., and R. Edwards. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics27: 863-864
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 71
    • 84883769323 scopus 로고    scopus 로고
    • Central role of cyclic electron transport around photosystem I in the regulation of photosynthesis
    • Shikanai, T. 2014. Central role of cyclic electron transport around photosystem I in the regulation of photosynthesis. Current Opinion in Biotechnology26: 25-30
    • (2014) Current Opinion in Biotechnology , vol.26 , pp. 25-30
    • Shikanai, T.1
  • 74
    • 0021554718 scopus 로고
    • High-temperature responses of North American cacti
    • Smith, S. D., B. Didden-Sopfy, and P. S. Nobel. 1984. High-temperature responses of North American cacti. Ecology65: 643-651
    • (1984) Ecology , vol.65 , pp. 643-651
    • Smith, S.D.1    Didden-Sopfy, B.2    Nobel, P.S.3
  • 75
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics22: 2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 78
    • 33745668217 scopus 로고    scopus 로고
    • Chloroplastic NAD(P)H dehydrogenase in tobacco leaves functions in alleviation of oxidative damage caused by temperature stress
    • Wang, P., W. Duan, A. Takabayashi, T. Endo, T. Shikanai, J. Y. Ye, and H. L. Mi. 2006. Chloroplastic NAD(P)H dehydrogenase in tobacco leaves functions in alleviation of oxidative damage caused by temperature stress. Plant Physiology141: 465-474
    • (2006) Plant Physiology , vol.141 , pp. 465-474
    • Wang, P.1    Duan, W.2    Takabayashi, A.3    Endo, T.4    Shikanai, T.5    Ye, J.Y.6    Mi, H.L.7
  • 80
    • 84895762952 scopus 로고    scopus 로고
    • Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates
    • Weng, M. L., J. C. Blazier, M. Govindu, and R. K. Jansen. 2014. Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates. Molecular Biology and Evolution31: 645-659
    • (2014) Molecular Biology and Evolution , vol.31 , pp. 645-659
    • Weng, M.L.1    Blazier, J.C.2    Govindu, M.3    Jansen, R.K.4
  • 81
    • 84888425451 scopus 로고    scopus 로고
    • Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family
    • Wicke, S., K. F. Muller, C. W. De Pamphilis, D. Quandt, N. J. Wickett, Y. Zhang, S. S. Renner, and G. M. Schneeweiss. 2013a. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. Plant Cell25: 3711-3725
    • (2013) Plant Cell , vol.25 , pp. 3711-3725
    • Wicke, S.1    Muller, K.F.2    De Pamphilis, C.W.3    Quandt, D.4    Wickett, N.J.5    Zhang, Y.6    Renner, S.S.7    Schneeweiss, G.M.8
  • 82
    • 84895755038 scopus 로고    scopus 로고
    • Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae
    • Wicke, S., B. Schaferhoff, C. W. Depamphilis, and K. F. Muller. 2013b. Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae. Molecular Biology and Evolution31: 529-545
    • (2013) Molecular Biology and Evolution , vol.31 , pp. 529-545
    • Wicke, S.1    Schaferhoff, B.2    Depamphilis, C.W.3    Muller, K.F.4
  • 83
    • 79957927000 scopus 로고    scopus 로고
    • Th e evolution of the plastid chromosome in land plants: Gene content, gene order, gene function
    • Wicke, S., G. M. Schneeweiss, C. W. Depamphilis, K. F. Muller, and D. Quandt. 2011. Th e evolution of the plastid chromosome in land plants: Gene content, gene order, gene function. Plant Molecular Biology76: 273-297
    • (2011) Plant Molecular Biology , vol.76 , pp. 273-297
    • Wicke, S.1    Schneeweiss, G.M.2    Depamphilis, C.W.3    Muller, K.F.4    Quandt, D.5
  • 84
    • 18044370145 scopus 로고    scopus 로고
    • A phylogeny of legumes (Leguminosae) based on analyses of the plastid matK gene resolves many well-supported subclades within the family
    • Wojciechowski, M., M. Lavin, and M. Sanderson. 2004. A phylogeny of legumes (Leguminosae) based on analyses of the plastid matK gene resolves many well-supported subclades within the family. American Journal of Botany91: 1846-1862
    • (2004) American Journal of Botany , vol.91 , pp. 1846-1862
    • Wojciechowski, M.1    Lavin, M.2    Sanderson, M.3
  • 85
    • 67349273773 scopus 로고    scopus 로고
    • Evolution of reduced and compact chloroplast genomes (CpDNAs) in Gnetophytes: Selection toward a lower-cost strategy
    • Wu, C.-S., Y.-T. Lai, C.-P. Lin, Y.-N. Wang, and S.-M. Chaw. 2009. Evolution of reduced and compact chloroplast genomes (cpDNAs) in Gnetophytes: Selection toward a lower-cost strategy. Molecular Phylogenetics and Evolution52: 115-124
    • (2009) Molecular Phylogenetics and Evolution , vol.52 , pp. 115-124
    • Wu, C.-S.1    Lai, Y.-T.2    Lin, C.-P.3    Wang, Y.-N.4    Chaw, S.-M.5
  • 86
    • 84855848337 scopus 로고    scopus 로고
    • Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and Cupressophytes and infl uence of heterotachy on the evaluation of gymnosperm phylogeny
    • Wu, C. S., Y. N. Wang, C. Y. Hsu, C. P. Lin, and S. M. Chaw. 2011. Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and Cupressophytes and infl uence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biology and Evolution3: 1284-1295
    • (2011) Genome Biology and Evolution , vol.3 , pp. 1284-1295
    • Wu, C.S.1    Wang, Y.N.2    Hsu, C.Y.3    Lin, C.P.4    Chaw, S.M.5
  • 87
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (CpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu, C. S., Y. N. Wang, S. M. Liu, and S. M. Chaw. 2007. Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants. Molecular Biology and Evolution24: 1366-1379
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1366-1379
    • Wu, C.S.1    Wang, Y.N.2    Liu, S.M.3    Chaw, S.M.4
  • 88
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman, S. K., R. K. Jansen, and J. L. Boore. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics20: 3252-3255
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 89
    • 79957773110 scopus 로고    scopus 로고
    • An SRC homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis
    • Yamamoto, H., L. Peng, Y. Fukao, and T. Shikanai. 2011. An SRC homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis. Plant Cell23: 1480–1493
    • (2011) Plant Cell , vol.23 , pp. 1480-1493
    • Yamamoto, H.1    Peng, L.2    Fukao, Y.3    Shikanai, T.4


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