-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altshul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altshul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0031813884
-
Analysis of plastid DNA-like sequences within the nuclear genomes of higher plants
-
Ayliffe MA, Scott NS, Timmis JN (1998). Analysis of plastid DNA-like sequences within the nuclear genomes of higher plants. Mol Biol Evol 15: 738-745. (Pubitemid 28240679)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.6
, pp. 738-745
-
-
Ayliffe, M.A.1
Scott, N.S.2
Timmis, J.N.3
-
3
-
-
0035358999
-
Mitochondrial pseudogenes: Evolution's misplaced witnesses
-
DOI 10.1016/S0169-5347(01)02151-6, PII S0169534701021516
-
Bensasson D, Zhang DX, Hartl DL, Hewitt GM (2001). Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol Evol 16: 314-321. (Pubitemid 32706648)
-
(2001)
Trends in Ecology and Evolution
, vol.16
, Issue.6
, pp. 314-321
-
-
Bensasson, D.1
Zhang, D.-X.2
Hartl, D.L.3
Hewitt, G.M.4
-
4
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
DOI 10.1101/gr.132102
-
Devos KM, Brown JKM, Bennetzen JL (2002). Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res 12: 1075-1079. (Pubitemid 34785200)
-
(2002)
Genome Research
, vol.12
, Issue.7
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.M.2
Bennetzen, J.L.3
-
5
-
-
0020488498
-
Chloroplast genes inside plant mitochondria
-
Ellis J (1982). Chloroplast genes inside plant mitochondria. Nature 299: 678-679.
-
(1982)
Nature
, vol.299
, pp. 678-679
-
-
Ellis, J.1
-
6
-
-
41149113024
-
Chloroplast DNA insertions into nuclear genome of rice: The genes, sites and ages of insertion involved
-
Guo X, Ruan S, Hu W, Cai D, Fan L (2008). Chloroplast DNA insertions into nuclear genome of rice: the genes, sites and ages of insertion involved. Func Integr Genomics 8: 101-108.
-
(2008)
Func Integr Genomics
, vol.8
, pp. 101-108
-
-
Guo, X.1
Ruan, S.2
Hu, W.3
Cai, D.4
Fan, L.5
-
7
-
-
0037309706
-
Evolutionary dynamics of large Numts in the human genome: Rarity of independent insertions and abundance of post-insertion duplications
-
DOI 10.1007/s00239-002-2390-5
-
Hazkani-Covo E, Sorek R, Graur D (2003). Evolutionary dynamics of large numts in the human genome: Rarity of independent insertions and abundance of post-insertion duplications. J Mol Evol 56: 169-174. (Pubitemid 36169685)
-
(2003)
Journal of Molecular Evolution
, vol.56
, Issue.2
, pp. 169-174
-
-
Hazkani-Covo, E.1
Sorek, R.2
Graur, D.3
-
8
-
-
55449085777
-
Numt-mediated double-strand break repair mitigates deletions during primate genome evolution
-
Hazkani-Covo E, Covo S (2008). Numt-mediated double-strand break repair mitigates deletions during primate genome evolution. PLoS Genet 4: e1000237.
-
(2008)
PLoS Genet
, vol.4
-
-
Hazkani-Covo, E.1
Covo, S.2
-
9
-
-
77649210966
-
Molecular Poltergeists mitochondrial DNA copies (numts) in sequenced nuclear genomes
-
Hazkani-Covo E, Zeller RM, Martin W (2010). Molecular Poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet 6: e1000834.
-
(2010)
PLoS Genet
, vol.6
-
-
Hazkani-Covo, E.1
Zeller, R.M.2
Martin, W.3
-
10
-
-
0035399772
-
How do mitochondrial genes get into the nucleus?
-
DOI 10.1016/S0168-9525(01)02312-5, PII S0168952501023125
-
Henze K, Martin W (2001). How mitochondrial genes get into the nucleus? Trends Genet 17: 383-387. (Pubitemid 32545382)
-
(2001)
Trends in Genetics
, vol.17
, Issue.7
, pp. 383-387
-
-
Henze, K.1
Martin, W.2
-
11
-
-
27244461126
-
Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes
-
DOI 10.1104/pp.105.060327
-
Huang CY, Grunheit N, Ahmadinejad N, Timmis JN, Martin W (2005). Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes. Plant Physiol 138: 1723-1733. (Pubitemid 43142115)
-
(2005)
Plant Physiology
, vol.138
, Issue.3
, pp. 1723-1733
-
-
Huang, C.Y.1
Grunheit, N.2
Ahmadinejad, N.3
Timmis, J.N.4
Martin, W.5
-
12
-
-
69749117757
-
Contrasting evolutionary dynamics between angiosperm and mammalian genomes
-
Kejnovsky E, Leitch I, Leitch A (2009). Contrasting evolutionary dynamics between angiosperm and mammalian genomes. Trends Ecol Evol 24: 572-582.
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 572-582
-
-
Kejnovsky, E.1
Leitch, I.2
Leitch, A.3
-
13
-
-
84930744720
-
Plant transposable elements: Biology and evolution
-
Wendel JF, Greilhuber J, Dolezel J, Leitch IJ (eds) Springer: Wien, Heidelberg, NewYork, Dortrecht, London
-
Kejnovsky E, Hawkins JS, Feschotte C (2012). Plant transposable elements: biology and evolutionWendel JF, Greilhuber J, Dolezel J, Leitch IJ (eds). Plant Genome Diversity, Volume 1. Springer: Wien, Heidelberg, NewYork, Dortrecht, London.
-
(2012)
Plant Genome Diversity
, vol.1
-
-
Kejnovsky, E.1
Hawkins, J.S.2
Feschotte, C.3
-
14
-
-
66449102561
-
DNA transfer from organelles to the nucleus: The idiosyncratic genetics of endosymbiosis
-
Kleine T, Maier UG, Leister D (2009). DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis. Ann Rev Plant Biol 60: 115-138.
-
(2009)
Ann Rev Plant Biol
, vol.60
, pp. 115-138
-
-
Kleine, T.1
Maier, U.G.2
Leister, D.3
-
15
-
-
27744526687
-
Origin, evolution and genetic effects of nuclear insertions of organelle DNA
-
DOI 10.1016/j.tig.2005.09.004, PII S0168952505002866
-
Leister D (2005). Origin, evolution and genetic effects of nuclear insertions of organelle DNA. Trends Genet 21: 655-663. (Pubitemid 41608688)
-
(2005)
Trends in Genetics
, vol.21
, Issue.12
, pp. 655-663
-
-
Leister, D.1
-
16
-
-
33749610017
-
No genome barriers to promiscuous DNA
-
Lewin R (1984). No genome barriers to promiscuous DNA. Science 224: 970-971.
-
(1984)
Science
, vol.224
, pp. 970-971
-
-
Lewin, R.1
-
17
-
-
2342466982
-
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
DOI 10.1101/gr.1466204
-
Ma J, Devos KM, Bennetzen JL (2004). Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res 14: 860-869. (Pubitemid 38660503)
-
(2004)
Genome Research
, vol.14
, Issue.5
, pp. 860-869
-
-
Ma, J.1
Devos, K.M.2
Bennetzen, J.L.3
-
18
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and why?
-
Martin W, Herrmann RG (1998). Gene transfers from organelles to the nucelus: how much, what happens, and why? Plant Physiol 118: 9-17. (Pubitemid 128652964)
-
(1998)
Plant Physiology
, vol.118
, Issue.1
, pp. 9-17
-
-
Martin, W.1
Herrmann, R.G.2
-
19
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Hansen A, Cornelson S, Lins T et al. (2002). Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99: 12246-12251.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelson, S.5
Lins, T.6
-
20
-
-
84865161947
-
Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences
-
Martis MM, Klemme S, Banaei-Moghaddam AM, Blattner FK, Macas J, Schmutzer T et al. (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc Natl Acad Sci USA 109: 13343-13346.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 13343-13346
-
-
Martis, M.M.1
Klemme, S.2
Banaei-Moghaddam, A.M.3
Blattner, F.K.4
MacAs, J.5
Schmutzer, T.6
-
21
-
-
27244457663
-
The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA flux
-
DOI 10.1105/tpc.104.027706
-
Matsuo M, Ito Y, Yamauchi R, Obokata J (2005). The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplastnuclear DNA flux. Plant Cell 17: 665-675. (Pubitemid 43138212)
-
(2005)
Plant Cell
, vol.17
, Issue.3
, pp. 665-675
-
-
Matsuo, M.1
Ito, Y.2
Yamauchi, R.3
Obokata, J.4
-
22
-
-
19844382575
-
Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants
-
DOI 10.1101/gr.3788705
-
Noutsos C, Richly E, Leister D (2005). Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants. Genome Res 15: 616-628. (Pubitemid 41043632)
-
(2005)
Genome Research
, vol.15
, Issue.5
, pp. 616-628
-
-
Noutsos, C.1
Richly, E.2
Leister, D.3
-
23
-
-
0034635568
-
Evidence for DNA loss as a determinant of genome size
-
DOI 10.1126/science.287.5455.1060
-
Petrov DA, Sangster TA, Johnston JS, Hartl DL, Shaw KL (2000). Evidence for DNA loss as a determinant of genome size. Science 287: 1060-1062. (Pubitemid 30094365)
-
(2000)
Science
, vol.287
, Issue.5455
, pp. 1060-1062
-
-
Petrov, D.A.1
Sangster, T.A.2
Johnston, J.S.3
Hartl, D.L.4
Shaw, K.L.5
-
24
-
-
2442637641
-
NUMTs in sequenced eukaryotic genomes
-
DOI 10.1093/molbev/msh110
-
Richly E, Leister D (2004a). NUMTs in sequenced eukaryotic genomes. Mol Biol Evol 21: 1081-1084. (Pubitemid 38658216)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.6
, pp. 1081-1084
-
-
Richly, E.1
Leister, D.2
-
25
-
-
4944253274
-
NUPTs in sequenced eukaryotes and their genomic organization in relation to NUMTs
-
DOI 10.1093/molbev/msh210
-
Richly E, Leister D (2004b). NUPTs in sequenced eukaryotes and their genomic organization in relation to NUMTs. Mol Biol Evol 21: 1972-1980. (Pubitemid 39331643)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.10
, pp. 1972-1980
-
-
Richly, E.1
Leister, D.2
-
26
-
-
77955288984
-
Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes
-
Roark LM, Hui AY, Donnelly L, Birchler JA, Newton KJ (2010). Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes. Cytogenet Genome Res 129: 17-23.
-
(2010)
Cytogenet Genome Res
, vol.129
, pp. 17-23
-
-
Roark, L.M.1
Hui, A.Y.2
Donnelly, L.3
Birchler, J.A.4
Newton, K.J.5
-
27
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
DOI 10.1038/1695
-
SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL (1998). The paleontology of intergene retrotransposons of maize. Nat Genet 20: 43-45. (Pubitemid 28410341)
-
(1998)
Nature Genetics
, vol.20
, Issue.1
, pp. 43-45
-
-
SanMiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
28
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
DOI 10.1126/science.274.5288.765
-
SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, Melake-Berhan A et al. (1996). Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768. (Pubitemid 26398252)
-
(1996)
Science
, vol.274
, Issue.5288
, pp. 765-768
-
-
SanMiguel, P.1
Tikhonov, A.2
Jin, Y.-K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
29
-
-
0035283304
-
Reducing the genome size of organelles favours gene transfer to the nucleus
-
DOI 10.1016/S0169-5347(00)02084-X, PII S016953470002084X
-
Selosse M-A, Albert B, Godelle B (2001). Reducing the genome size of organelles favours gene transfer to the nucleus. Trends Ecol Evol 16: 135-141. (Pubitemid 32149937)
-
(2001)
Trends in Ecology and Evolution
, vol.16
, Issue.3
, pp. 135-141
-
-
Selosse, M.-A.1
Albert, B.2
Godelle, B.3
-
30
-
-
0141788445
-
Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis
-
DOI 10.1023/A:1025472709537
-
Shahmuradov IA, Akbarova YY, Solovyev VV, Aliyev JA (2003). Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis. Plant Mol Biol 52: 923-934. (Pubitemid 37181487)
-
(2003)
Plant Molecular Biology
, vol.52
, Issue.5
, pp. 923-934
-
-
Shahmuradov, I.A.1
Akbarova, Y.Yu.2
Solovyev, V.V.3
Aliyev, J.A.4
-
31
-
-
79960094103
-
Correlation between nuclear plastid DNA abundance and plastid number supports the limited transfer window hypothesis
-
Smith DR, Crosby K, Lee RW (2011). Correlation between nuclear plastid DNA abundance and plastid number supports the limited transfer window hypothesis. Genome Biol Evol 3: 365-371.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 365-371
-
-
Smith, D.R.1
Crosby, K.2
Lee, R.W.3
-
32
-
-
33845302595
-
Experimental reconstruction of functional gene transfer from the tobacco plastid geneome to the nucleus
-
DOI 10.1105/tpc.106.046466
-
Stegemann S, Bock R (2006). Experimental reconstruction of functional gene tarsnefer from tobacco plastid genome to the nucleus. Plant Cell 18: 2869-2878. (Pubitemid 46013262)
-
(2006)
Plant Cell
, vol.18
, Issue.11
, pp. 2869-2878
-
-
Stegemann, S.1
Bock, R.2
-
33
-
-
0036047666
-
Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion
-
DOI 10.1007/s00438-002-0706-1
-
Yuan Q, Hill J, Hsiao K, Moffat K, Ouyang S, Cheng Z et al. (2002). Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion. Mol Gen Genet 267: 713-720. (Pubitemid 35013678)
-
(2002)
Molecular Genetics and Genomics
, vol.267
, Issue.6
, pp. 713-720
-
-
Yuan, Q.1
Hill, J.2
Hsiao, J.3
Moffat, K.4
Ouyang, S.5
Cheng, Z.6
Jiang, J.7
Buell, C.8
|