-
1
-
-
32544451561
-
Why is plastid genomes retained in non-photosynthetic organisms?
-
Barbrook AC, Howe CJ, Purton S (2006) Why is plastid genomes retained in non-photosynthetic organisms? Trends Plant Sci 11: 101-108.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 101-108
-
-
Barbrook, A.C.1
Howe, C.J.2
Purton, S.3
-
2
-
-
39049101019
-
Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
-
Barkman TJ, McNeal JR, Lim S-H, Coat G, Croom HB, Young ND, dePamphilis CW (2007) Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants. BMC Evol Biol 7: 248.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 248
-
-
Barkman, T.J.1
McNeal, J.R.2
Lim, S.-H.3
Coat, G.4
Croom, H.B.5
Young, N.D.6
Depamphilis, C.W.7
-
3
-
-
42749089535
-
Molecular evolution of rbcL in mycoheterotrophic coralroot orchids (Corallorhiza Gagnebin, Orchidaceae)
-
Barrett CF, Freudenstein JV (2008) Molecular evolution of rbcL in mycoheterotrophic coralroot orchids (Corallorhiza Gagnebin, Orchidaceae). Mol Phylogenet Evol 47(2): 665-679.
-
(2008)
Mol Phylogenet Evol
, vol.47
, Issue.2
, pp. 665-679
-
-
Barrett, C.F.1
Freudenstein, J.V.2
-
4
-
-
53249100678
-
Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited
-
Beilstein MA, Al-Shehbaz IA, Mathews S, Kellogg EA (2008) Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited. Am J Bot 95(10): 1307-1327.
-
(2008)
Am J Bot
, vol.95
, Issue.10
, pp. 1307-1327
-
-
Beilstein, M.A.1
Al-Shehbaz, I.A.2
Mathews, S.3
Kellogg, E.A.4
-
5
-
-
0023359272
-
Why do chloroplasts and mitochondria contain so many copies of their genome?
-
Bendich AJ (1987) Why do chloroplasts and mitochondria contain so many copies of their genome? Bioessays 6: 279-282.
-
(1987)
Bioessays
, vol.6
, pp. 279-282
-
-
Bendich, A.J.1
-
6
-
-
33746141359
-
Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A
-
Bennett JR, Mathews S (2006) Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. Am J Bot 93(7): 1039-1051.
-
(2006)
Am J Bot
, vol.93
, Issue.7
, pp. 1039-1051
-
-
Bennett, J.R.1
Mathews, S.2
-
7
-
-
25144524167
-
The evolutionary ecology of myco-heterotrophy
-
Bidartondo MI (2005) The evolutionary ecology of myco-heterotrophy. New Phytol 167: 335-352.
-
(2005)
New Phytol
, vol.167
, pp. 335-352
-
-
Bidartondo, M.I.1
-
8
-
-
0034803659
-
Extreme specificity in epiparasitic Monotropoideae (Ericaceae): widespread phylogenetic and geographical structure
-
Bidartondo MI, Bruns TD (2001) Extreme specificity in epiparasitic Monotropoideae (Ericaceae): widespread phylogenetic and geographical structure. Mol Ecol 10: 2285-2295.
-
(2001)
Mol Ecol
, vol.10
, pp. 2285-2295
-
-
Bidartondo, M.I.1
Bruns, T.D.2
-
9
-
-
79957873740
-
Recent loss of plastid encoded ndh genes within Erodium (Gerianaceae)
-
Blazier JC, Gusinger MM, Jansen RK (2011) Recent loss of plastid encoded ndh genes within Erodium (Gerianaceae). Plant Mol Biol 76(3-5): 263-272.
-
(2011)
Plant Mol Biol
, vol.76
, Issue.3-5
, pp. 263-272
-
-
Blazier, J.C.1
Gusinger, M.M.2
Jansen, R.K.3
-
10
-
-
0030664113
-
The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex
-
Boudreau E, Takahashi Y, Lemieux C, Turmel M, Rochaix JD (1997) The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex. EMBO J 16: 6095-6104.
-
(1997)
EMBO J
, vol.16
, pp. 6095-6104
-
-
Boudreau, E.1
Takahashi, Y.2
Lemieux, C.3
Turmel, M.4
Rochaix, J.D.5
-
11
-
-
67349254201
-
Loss of all plastid ndh genes in gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny
-
Braukmann TWA, Kuzmina M, Stefanović S (2009) Loss of all plastid ndh genes in gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny. Curr Genet 55(3): 323-337.
-
(2009)
Curr Genet
, vol.55
, Issue.3
, pp. 323-337
-
-
Braukmann, T.W.A.1
Kuzmina, M.2
Stefanović, S.3
-
12
-
-
1542314443
-
Photosynthetic evolution in parasitic plants: insight from the chloroplast genome
-
Bungard RA (2004) Photosynthetic evolution in parasitic plants: insight from the chloroplast genome. Bioessays 26: 235-247.
-
(2004)
Bioessays
, vol.26
, pp. 235-247
-
-
Bungard, R.A.1
-
13
-
-
60349127044
-
Protein transport in organelles: dual targeting of proteins to mitochondria and chloroplasts
-
Carrie C, Giraud E, Whelan J (2009) Protein transport in organelles: dual targeting of proteins to mitochondria and chloroplasts. FEBS J 276: 1187-1195.
-
(2009)
FEBS J
, vol.276
, pp. 1187-1195
-
-
Carrie, C.1
Giraud, E.2
Whelan, J.3
-
14
-
-
0003373943
-
Further studies on Monotropoideae
-
Copeland HF (1941) Further studies on Monotropoideae. Madroño 6: 97-119.
-
(1941)
Madroño
, vol.6
, pp. 97-119
-
-
Copeland, H.F.1
-
15
-
-
0028118265
-
Molecular phylogeny of the Monotropoideae (Ericaceae) with a note on the placement of Pyroloideae
-
Cullings K (1994) Molecular phylogeny of the Monotropoideae (Ericaceae) with a note on the placement of Pyroloideae. J Evol Biol 7(5): 501-516.
-
(1994)
J Evol Biol
, vol.7
, Issue.5
, pp. 501-516
-
-
Cullings, K.1
-
16
-
-
34147187221
-
Floral gigantism in Rafflesiaceae
-
Davis CC, Latvis M, Nickrent DL, Wurdack KJ, Baum DA (2007) Floral gigantism in Rafflesiaceae. Science 315: 1812.
-
(2007)
Science
, vol.315
, pp. 1812
-
-
Davis, C.C.1
Latvis, M.2
Nickrent, D.L.3
Wurdack, K.J.4
Baum, D.A.5
-
17
-
-
79957572067
-
Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes
-
doi:10.1093/molbev/msr028
-
Delannoy E, Fijii S, Colas des Francs C, Brundett M, Small I (2011) Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes. Mol Biol Evol 28(56): 2077-2086. doi: 10. 1093/molbev/msr028.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.56
, pp. 2077-2086
-
-
Delannoy, E.1
Fijii, S.2
des Colas Francs, C.3
Brundett, M.4
Small, I.5
-
18
-
-
0037019822
-
The obligate root parasite Orobanche cumara exhibits several rbcL sequences
-
Delavault P, Thalouarn P (2002) The obligate root parasite Orobanche cumara exhibits several rbcL sequences. Gene 297: 85-92.
-
(2002)
Gene
, vol.297
, pp. 85-92
-
-
Delavault, P.1
Thalouarn, P.2
-
19
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
-
(1987)
Phytochem Bull
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
20
-
-
67349262843
-
Multiple independent losses of two genes and one intron from legume chloroplast genomes
-
Doyle JJ, Doyle JL, Palmer JD (1995) Multiple independent losses of two genes and one intron from legume chloroplast genomes. Mol Phylogenet Evol 5: 429-438.
-
(1995)
Mol Phylogenet Evol
, vol.5
, pp. 429-438
-
-
Doyle, J.J.1
Doyle, J.L.2
Palmer, J.D.3
-
21
-
-
84856942796
-
-
4. 4 Biomatters Ltd., Auckland
-
Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Heled J, Kearse M, Moir M, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2010) Geneious v5. 4. 4 Biomatters Ltd., Auckland. http://www. geneious. com.
-
(2010)
Geneious v5
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Heled, J.6
Kearse, M.7
Moir, M.8
Stones-Havas, S.9
Sturrock, S.10
Thierer, T.11
Wilson, A.12
-
22
-
-
84859944340
-
A mitochrondrial DNA and combined analysis at the base of Ericaceae
-
Botany 2011, St. Louis MO, St. Louis Mo, abstract 19010
-
Feldenkris E, Broe M, Freudenstein J (2011) A mitochrondrial DNA and combined analysis at the base of Ericaceae. Botany 2011, St. Louis MO, Botanical Society of America, St. Louis Mo, abstract 19010.
-
(2011)
Botanical Society of America
-
-
Feldenkris, E.1
Broe, M.2
Freudenstein, J.3
-
23
-
-
84959792503
-
The number of evolutionary trees
-
Felsenstein J (1978) The number of evolutionary trees. Syst Zool 27: 27-33.
-
(1978)
Syst Zool
, vol.27
, pp. 27-33
-
-
Felsenstein, J.1
-
24
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
25
-
-
0000461280
-
Confidence limits on phylogenies-an approach using bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies-an approach using bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
26
-
-
84959747425
-
Toward defining the course of evolution: minimum change for a specific tree topology
-
Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol 20(4): 406-416.
-
(1971)
Syst Biol
, vol.20
, Issue.4
, pp. 406-416
-
-
Fitch, W.M.1
-
27
-
-
0032735376
-
Relationship and character transformation in Pyroloideae (Ericaceae) based on ITS sequences, morphology, and development
-
Freudenstein JV (1999) Relationship and character transformation in Pyroloideae (Ericaceae) based on ITS sequences, morphology, and development. Syst Bot 24: 398-408.
-
(1999)
Syst Bot
, vol.24
, pp. 398-408
-
-
Freudenstein, J.V.1
-
28
-
-
36349004130
-
Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii
-
Funk HT, Berg S, Krupinska K, Maier UG, Krause K (2007) Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii. BMC Plant Biol 7: 45.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 45
-
-
Funk, H.T.1
Berg, S.2
Krupinska, K.3
Maier, U.G.4
Krause, K.5
-
29
-
-
0034351387
-
Likelihood based tests of topologies in phylogenetics
-
Goldman N, Anderson JP, Rodrigo AG (2000) Likelihood based tests of topologies in phylogenetics. Syst Bot 49: 652-670.
-
(2000)
Syst Bot
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
30
-
-
0033666273
-
Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
-
Graham SW, Olmstead RG (2000) Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am J Bot 87: 1712-1730.
-
(2000)
Am J Bot
, vol.87
, pp. 1712-1730
-
-
Graham, S.W.1
Olmstead, R.G.2
-
31
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
Hendy MD, Penny D (1989) A framework for the quantitative study of evolutionary trees. Syst Zool 38: 296-309.
-
(1989)
Syst Zool
, vol.38
, pp. 296-309
-
-
Hendy, M.D.1
Penny, D.2
-
32
-
-
0033927228
-
Stamen development in the Ericaceae. I. Anther wall, microsporogenesis, inversion, and appendages
-
Hermann PM, Palser BF (2000) Stamen development in the Ericaceae. I. Anther wall, microsporogenesis, inversion, and appendages. Am J Bot 87(7): 934-957.
-
(2000)
Am J Bot
, vol.87
, Issue.7
, pp. 934-957
-
-
Hermann, P.M.1
Palser, B.F.2
-
33
-
-
0000259305
-
The utility of the atpB gene sequences in resolving phylogenetic relationships: comparison with rbcL and 18S ribomsomal DNA sequences in the Lardizabalaceae
-
Hoot SB, Culham A, Crane PR (1995) The utility of the atpB gene sequences in resolving phylogenetic relationships: comparison with rbcL and 18S ribomsomal DNA sequences in the Lardizabalaceae. Ann MO Bot Gard 82(2): 194-207.
-
(1995)
Ann MO Bot Gard
, vol.82
, Issue.2
, pp. 194-207
-
-
Hoot, S.B.1
Culham, A.2
Crane, P.R.3
-
34
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen RK, Cai Z, Raubeson LA, Daniell H, dePamphilis CW, Leebens-Mack J, Muller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee S, Peery R, McNeal JR, Kuehl JV, Boore JL (2007) Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci USA 104: 1369-1374.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1369-1374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
Depamphilis, C.W.5
Leebens-Mack, J.6
Muller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
Chumley, T.W.11
Lee, S.12
Peery, R.13
McNeal, J.R.14
Kuehl, J.V.15
Boore, J.L.16
-
35
-
-
50849113730
-
From chloroplasts to "cryptic" plastids: evolution of plastid genomes in parasitic plants
-
Krause K (2008) From chloroplasts to "cryptic" plastids: evolution of plastid genomes in parasitic plants. Curr Genet 54: 111-121.
-
(2008)
Curr Genet
, vol.54
, pp. 111-121
-
-
Krause, K.1
-
36
-
-
0344750191
-
Beitrage zur taxonomie und chorologie der Gattung Pyrola L
-
Krisa B (1971) Beitrage zur taxonomie und chorologie der Gattung Pyrola L. Bot Jahrb Syst 90: 476-508.
-
(1971)
Bot Jahrb Syst
, vol.90
, pp. 476-508
-
-
Krisa, B.1
-
37
-
-
0036629761
-
Phylogenetic classification of Ericaceae: molecular and morphological evidence
-
Kron KA, Judd WS, Stevens PF, Crayn DM, Anderberg AA, Gadek PA, Quinn CJ, Luteyn JL (2002) Phylogenetic classification of Ericaceae: molecular and morphological evidence. Bot Rev 68: 35-423.
-
(2002)
Bot Rev
, vol.68
, pp. 35-423
-
-
Kron, K.A.1
Judd, W.S.2
Stevens, P.F.3
Crayn, D.M.4
Anderberg, A.A.5
Gadek, P.A.6
Quinn, C.J.7
Luteyn, J.L.8
-
39
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave C, Preparata G, Saccone C, Serio G (1984) A new method for calculating evolutionary substitution rates. J Mol Evol 20: 86-93.
-
(1984)
J Mol Evol
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
40
-
-
80052030046
-
Rate accelerations in nuclear 18S rDNA of mycoheterotrophic and parasitic angiosperms
-
doi:10.1007/s10265-010-0395-5
-
Lemaire B, Huysmans S, Smets E, Merckx V (2010) Rate accelerations in nuclear 18S rDNA of mycoheterotrophic and parasitic angiosperms. J Plant Res 124(5): 561-576. doi: 10. 1007/s10265-010-0395-5.
-
(2010)
J Plant Res
, vol.124
, Issue.5
, pp. 561-576
-
-
Lemaire, B.1
Huysmans, S.2
Smets, E.3
Merckx, V.4
-
41
-
-
79955420800
-
Phylogeny of Pyroleae (Ericaceae): implications for character evolution
-
Liu ZW, Wang Z, Zhou J, Peng H (2011) Phylogeny of Pyroleae (Ericaceae): implications for character evolution. J Plant Res 124: 325-337.
-
(2011)
J Plant Res
, vol.124
, pp. 325-337
-
-
Liu, Z.W.1
Wang, Z.2
Zhou, J.3
Peng, H.4
-
42
-
-
0029935637
-
Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis
-
Lockhart PJ, Larkum AWD, Steel MA, Waddell PJ, Penny D (1996) Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis. Proc Natl Acad Sci USA 93: 1930-1934.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1930-1934
-
-
Lockhart, P.J.1
Larkum, A.W.D.2
Steel, M.A.3
Waddell, P.J.4
Penny, D.5
-
43
-
-
0031687575
-
The rbcL gene from the non-photosynthetic parastite Lathraea clandestina is not transcribed by a plastid-encoded RNA polymerase
-
Lusson NA, Delavault PM, Thalouarn PA (1998) The rbcL gene from the non-photosynthetic parastite Lathraea clandestina is not transcribed by a plastid-encoded RNA polymerase. Curr Genet 34: 212-215.
-
(1998)
Curr Genet
, vol.34
, pp. 212-215
-
-
Lusson, N.A.1
Delavault, P.M.2
Thalouarn, P.A.3
-
44
-
-
77954143469
-
Plastid ndh genes in plant evolution
-
Martin M, Sabater B (2010) Plastid ndh genes in plant evolution. Plant Physiol Biochem 48: 636-645.
-
(2010)
Plant Physiol Biochem
, vol.48
, pp. 636-645
-
-
Martin, M.1
Sabater, B.2
-
45
-
-
0029858595
-
The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of loci found in dicot angiosperms
-
Mathews S, Sharrock RA (1996) The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of loci found in dicot angiosperms. Mol Biol Evol 13(8): 1141-1150.
-
(1996)
Mol Biol Evol
, vol.13
, Issue.8
, pp. 1141-1150
-
-
Mathews, S.1
Sharrock, R.A.2
-
46
-
-
38849124960
-
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
-
McNeal JR, Kuehl JV, Boore JL, dePamphilis CW (2007a) Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. BMC Plant Biol 7: 57.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 57
-
-
McNeal, J.R.1
Kuehl, J.V.2
Boore, J.L.3
Depamphilis, C.W.4
-
47
-
-
39449112657
-
Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae)
-
McNeal JR, Arumugunathan K, Kuehl JV, Boore JL, dePamphilis CW (2007b) Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae). BMC Biol 5: 55.
-
(2007)
BMC Biol
, vol.5
, pp. 55
-
-
McNeal, J.R.1
Arumugunathan, K.2
Kuehl, J.V.3
Boore, J.L.4
Depamphilis, C.W.5
-
48
-
-
74549209678
-
Evolution of mycoheterotrophy in plants: a phylogenetic perspective
-
Merckx V, Freudenstein JV (2010) Evolution of mycoheterotrophy in plants: a phylogenetic perspective. New Phytol 185: 605-609.
-
(2010)
New Phytol
, vol.185
, pp. 605-609
-
-
Merckx, V.1
Freudenstein, J.V.2
-
49
-
-
14844317300
-
A cladistic analysis of Monotropa uniflora (Ericaceae) inferred from large ribosomal subunit (26S) rRNA gene sequences
-
Neyland R, Hennigan MK (2004) A cladistic analysis of Monotropa uniflora (Ericaceae) inferred from large ribosomal subunit (26S) rRNA gene sequences. Castanea 69: 265-271.
-
(2004)
Castanea
, vol.69
, pp. 265-271
-
-
Neyland, R.1
Hennigan, M.K.2
-
50
-
-
0002812154
-
Orígenes filosgenéticos de las plantas parásitas
-
López-sáez JA, Catalán P, Sáez L (eds) Mundi-Prensa Libros, Madrid
-
Nickrent DL (2002) Orígenes filosgenéticos de las plantas parásitas. In: López-sáez JA, Catalán P, Sáez L (eds) Plantas parásitas de la Península Ibérica e Islas Baleares. Mundi-Prensa Libros, Madrid, pp 29-56.
-
(2002)
Plantas parásitas de la Península Ibérica e Islas Baleares
, pp. 29-56
-
-
Nickrent, D.L.1
-
52
-
-
0002880305
-
Molecular phylogenetic and evolutionary studies of parasitic plants
-
D. Soltis, P. Soltis, and J. Doyle (Eds.), Boston: Kluwer
-
Nickrent DL, Duff RJ, Colwell AE, Wolfe AD, Young ND, Steiner KE, dePamphilis CW (1998) Molecular phylogenetic and evolutionary studies of parasitic plants. In: Soltis D, Soltis P, Doyle J (eds) Molecular systematics of plants II. DNA sequencing. Kluwer, Boston, pp 211-241.
-
(1998)
Molecular Systematics of Plants II. DNA Sequencing
, pp. 211-241
-
-
Nickrent, D.L.1
Duff, R.J.2
Colwell, A.E.3
Wolfe, A.D.4
Young, N.D.5
Steiner, K.E.6
Depamphilis, C.W.7
-
53
-
-
9144251839
-
Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer
-
Nickrent DL, Blarer A, Qiu Y-L, Vidal-Russel R, Anderson FE (2004) Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer. BMC Evol Biol 4: 40.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 40
-
-
Nickrent, D.L.1
Blarer, A.2
Qiu, Y.-L.3
Vidal-Russel, R.4
Anderson, F.E.5
-
54
-
-
0028255725
-
Combining data in phylogenetic systematics: an empirical approach using three molecular data sets in the Solanaceae
-
Olmstead RG, Sweere JA (1994) Combining data in phylogenetic systematics: an empirical approach using three molecular data sets in the Solanaceae. Syst Biol 43: 467-481.
-
(1994)
Syst Biol
, vol.43
, pp. 467-481
-
-
Olmstead, R.G.1
Sweere, J.A.2
-
55
-
-
0025249858
-
Contrasting modes and tempos of genome evolution in land plant organelles
-
Palmer JD (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6: 115-120.
-
(1990)
Trends Genet
, vol.6
, pp. 115-120
-
-
Palmer, J.D.1
-
56
-
-
0002021422
-
The origin and evolution of plastids their genomes
-
D. E. Soltis, P. S. Soltis, and J. J. Doyle (Eds.), Boston: Kluwer
-
Palmer JD, Delwiche CF (1998) The origin and evolution of plastids their genomes. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants II. Kluwer, Boston, pp 375-409.
-
(1998)
Molecular Systematics of Plants II
, pp. 375-409
-
-
Palmer, J.D.1
Delwiche, C.F.2
-
57
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
59
-
-
59349101593
-
Green plants that feed on fungus: facts and questions about mixotrophy
-
Selosse MA, Roy M (2009) Green plants that feed on fungus: facts and questions about mixotrophy. Trends Plant Sci 14(2): 64-70.
-
(2009)
Trends Plant Sci
, vol.14
, Issue.2
, pp. 64-70
-
-
Selosse, M.A.1
Roy, M.2
-
60
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H (2002) An approximately unbiased test of phylogenetic tree selection. Syst Bot 51: 369-381.
-
(2002)
Syst Bot
, vol.51
, pp. 369-381
-
-
Shimodaira, H.1
-
61
-
-
0032766857
-
Multiple comparisons of loglikelihoods with applications to phylogenetic inference
-
Shimodaira H, Hasegawa M (1999) Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Mol Biol Evol 16: 1114-1116.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
62
-
-
0036139287
-
CONSEL: for assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
63
-
-
84968989005
-
The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
-
Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043-2049.
-
(1986)
EMBO J
, vol.5
, pp. 2043-2049
-
-
Shinozaki, K.1
Ohme, M.2
Tanaka, M.3
Wakasugi, T.4
Hayashida, N.5
Matsubayashi, T.6
Zaita, N.7
Chunwongse, J.8
Obokata, J.9
Yamaguchi-Shinozaki, K.10
Ohto, C.11
Torazawa, K.12
Meng, B.Y.13
Sugita, M.14
Deno, H.15
Kamogashira, T.16
Yamada, K.17
Kusuda, J.18
Takaiwa, F.19
Kato, A.20
Tohdoh, N.21
Shimada, H.22
Sugiura, M.23
more..
-
64
-
-
3242700373
-
Testing the phylogenetic position of a parasitic plant (Cuscuta, Convolvulaceae, Asteridae): Bayesian inference and the parametric bootstrap on data drawn from three genomes
-
Stefanović S, Olmstead RG (2004) Testing the phylogenetic position of a parasitic plant (Cuscuta, Convolvulaceae, Asteridae): Bayesian inference and the parametric bootstrap on data drawn from three genomes. Syst Biol 53: 384-399.
-
(2004)
Syst Biol
, vol.53
, pp. 384-399
-
-
Stefanović, S.1
Olmstead, R.G.2
-
65
-
-
34250694272
-
Delimitation of major lineages within Cuscuta subgenus Grammica (Convolvulaceae) using plastid and nuclear DNA sequences
-
Stefanović S, Kuzmina M, Costea M (2007) Delimitation of major lineages within Cuscuta subgenus Grammica (Convolvulaceae) using plastid and nuclear DNA sequences. Am J Bot 94(4): 568-589.
-
(2007)
Am J Bot
, vol.94
, Issue.4
, pp. 568-589
-
-
Stefanović, S.1
Kuzmina, M.2
Costea, M.3
-
67
-
-
47649118542
-
Substitution of the gene for chloroplast RPS16 was assisted by generation of dual targeting signal
-
Ueda M, Nishikawa T, Fujimoto M, Takanashi H, Arimura S, Tsutsumi N, Kadowaki K (2008) Substitution of the gene for chloroplast RPS16 was assisted by generation of dual targeting signal. Mol Biol Evol 25(8): 1566-1575.
-
(2008)
Mol Biol Evol
, vol.25
, Issue.8
, pp. 1566-1575
-
-
Ueda, M.1
Nishikawa, T.2
Fujimoto, M.3
Takanashi, H.4
Arimura, S.5
Tsutsumi, N.6
Kadowaki, K.7
-
68
-
-
79957927000
-
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
-
Wicke S, Schneeweiss GM, dePamphilis CW, Muller KF, Quandt D (2011) The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol 76: 273-297.
-
(2011)
Plant Mol Biol
, vol.76
, pp. 273-297
-
-
Wicke, S.1
Schneeweiss, G.M.2
Depamphilis, C.W.3
Muller, K.F.4
Quandt, D.5
-
69
-
-
38949092504
-
Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis
-
Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, dePamphilis CW, Boore JL, Goffinet B (2008) Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Mol Biol Evol 25: 393-401.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 393-401
-
-
Wickett, N.J.1
Zhang, Y.2
Hansen, S.K.3
Roper, J.M.4
Kuehl, J.V.5
Plock, S.A.6
Wolf, P.G.7
Depamphilis, C.W.8
Boore, J.L.9
Goffinet, B.10
-
71
-
-
0031127853
-
Alternate pathways of evolution for the photosynthetic gene rbcL in four non-photosynthetic species of Orobanche
-
Wolfe AD, dePamphilis CW (1997) Alternate pathways of evolution for the photosynthetic gene rbcL in four non-photosynthetic species of Orobanche. Plant Mol Biol 33: 965-977.
-
(1997)
Plant Mol Biol
, vol.33
, pp. 965-977
-
-
Wolfe, A.D.1
Depamphilis, C.W.2
-
72
-
-
0031684776
-
The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and non-photosynthetic parasitic plants
-
Wolfe AD, dePamphilis CW (1998) The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and non-photosynthetic parasitic plants. Mol Biol Evol 15: 1243-1258.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1243-1258
-
-
Wolfe, A.D.1
Depamphilis, C.W.2
-
73
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84: 9054-9058.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
74
-
-
0026451883
-
Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes
-
Wolfe KH, Morden CW, Ems SC, Palmer JD (1992) Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes. J Mol Evol 35: 304-317.
-
(1992)
J Mol Evol
, vol.35
, pp. 304-317
-
-
Wolfe, K.H.1
Morden, C.W.2
Ems, S.C.3
Palmer, J.D.4
-
75
-
-
77950794398
-
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
-
Wu F, Chan M, Liao D, Hsu C, Lee Y, Daniell H, Duvall MR, Lin C (2010) Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae. BMC Plant Biol 10: 68.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 68
-
-
Wu, F.1
Chan, M.2
Liao, D.3
Hsu, C.4
Lee, Y.5
Daniell, H.6
Duvall, M.R.7
Lin, C.8
|