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Volumn 56, Issue , 2015, Pages 348-355

PhenoPredict: A disease phenome-wide drug repositioning approach towards schizophrenia drug discovery

Author keywords

Disease phenotype; Drug discovery; Drug repositioning; Schizophrenia; Systems biology

Indexed keywords

DRUG THERAPY; FORECASTING; KNOWLEDGE BASED SYSTEMS;

EID: 84938584604     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2015.06.027     Document Type: Article
Times cited : (27)

References (54)
  • 2
    • 20344374645 scopus 로고    scopus 로고
    • Prevalence, severity, and comorbidity of 12-month DSM-IV disorders in the National Comorbidity Survey Replication
    • Kessler R.C., Chiu W.T., Demler O., Walters E.E. Prevalence, severity, and comorbidity of 12-month DSM-IV disorders in the National Comorbidity Survey Replication. Arch. Gen. Psychiat. 2005, 762(6):617-627.
    • (2005) Arch. Gen. Psychiat. , vol.762 , Issue.6 , pp. 617-627
    • Kessler, R.C.1    Chiu, W.T.2    Demler, O.3    Walters, E.E.4
  • 4
    • 84856706805 scopus 로고    scopus 로고
    • Puzzling over schizophrenia: schizophrenia as a pathway disease
    • Sullivan P.F. Puzzling over schizophrenia: schizophrenia as a pathway disease. Nat. Med. 2012, 18(2):210-211.
    • (2012) Nat. Med. , vol.18 , Issue.2 , pp. 210-211
    • Sullivan, P.F.1
  • 5
    • 84896034967 scopus 로고    scopus 로고
    • Time for new schizophrenia Rx
    • Hyman S.E. Time for new schizophrenia Rx. Science 2014, 343(6176):1177.
    • (2014) Science , vol.343 , Issue.6176 , pp. 1177
    • Hyman, S.E.1
  • 6
    • 84867439307 scopus 로고    scopus 로고
    • Revolution stalled
    • 155cm11-155cm11
    • Hyman S.E. Revolution stalled. Sci. Transl. Med. 2012, 4(155). 155cm11-155cm11.
    • (2012) Sci. Transl. Med. , vol.4 , Issue.155
    • Hyman, S.E.1
  • 7
    • 77955114844 scopus 로고    scopus 로고
    • Is pharma running out of brainy ideas
    • Miller G. Is pharma running out of brainy ideas. Science 2010, 329(5991):502-504.
    • (2010) Science , vol.329 , Issue.5991 , pp. 502-504
    • Miller, G.1
  • 8
    • 84886895854 scopus 로고    scopus 로고
    • Psychiatric Drug Development: Diagnosing a Crisis
    • Dana Foundation.
    • S.E. Hyman, Psychiatric Drug Development: Diagnosing a Crisis, in: Cerebrum: The Dana Forum on Brain Science, vol. 2013, Dana Foundation.
    • (2013) Cerebrum: The Dana Forum on Brain Science
    • Hyman, S.E.1
  • 11
    • 84938669582 scopus 로고    scopus 로고
    • Drug Discovery: A Casebook and Analysis, Humana Press, Clifton, NJ
    • R.A. Maxwell, S.B. Eckhardt, Drug Discovery: A Casebook and Analysis, Humana Press, Clifton, NJ, (p. xvii).
    • Maxwell, R.A.1    Eckhardt, S.B.2
  • 12
    • 84874571892 scopus 로고    scopus 로고
    • Rapid antidepressant effects of ketamine ignite drug discovery
    • Dolgin E. Rapid antidepressant effects of ketamine ignite drug discovery. Nat. Med. 2013, 19(1):8.
    • (2013) Nat. Med. , vol.19 , Issue.1 , pp. 8
    • Dolgin, E.1
  • 13
    • 4344668661 scopus 로고    scopus 로고
    • Drug repositioning: identifying and developing new uses for existing drugs
    • Ashburn T.T., Thor K.B. Drug repositioning: identifying and developing new uses for existing drugs. Nat. Rev. Drug Discovery 2004, 3(8):673-683.
    • (2004) Nat. Rev. Drug Discovery , vol.3 , Issue.8 , pp. 673-683
    • Ashburn, T.T.1    Thor, K.B.2
  • 14
    • 79960796417 scopus 로고    scopus 로고
    • Exploiting drugdisease relationships for computational drug repositioning
    • Dudley J.T., Deshpande T., Butte A.J. Exploiting drugdisease relationships for computational drug repositioning. Briefings Bioinformatics 2011, 12(4):303-311.
    • (2011) Briefings Bioinformatics , vol.12 , Issue.4 , pp. 303-311
    • Dudley, J.T.1    Deshpande, T.2    Butte, A.J.3
  • 17
    • 68249144628 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
    • Kinnings S.L., Liu N., Buchmeier N., Tonge P.J., Xie L., Bourne P.E. Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis. PLoS Comput. Biol. 2009, 5(7):e1000423.
    • (2009) PLoS Comput. Biol. , vol.5 , Issue.7 , pp. e1000423
    • Kinnings, S.L.1    Liu, N.2    Buchmeier, N.3    Tonge, P.J.4    Xie, L.5    Bourne, P.E.6
  • 18
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb J., Crawford E.D., Peck D., Modell J.W., Blat I.C., Wrobel M.J., Golub T.R. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 2006, 313(5795):1929-1935.
    • (2006) Science , vol.313 , Issue.5795 , pp. 1929-1935
    • Lamb, J.1    Crawford, E.D.2    Peck, D.3    Modell, J.W.4    Blat, I.C.5    Wrobel, M.J.6    Golub, T.R.7
  • 20
    • 80051831092 scopus 로고    scopus 로고
    • Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
    • 96ra76-96ra76
    • Dudley J.T., Sirota M., Shenoy M., Pai R.K., Roedder S., Chiang A.P., Butte A.J. Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease. Sci. Transl. Med. 2011, 3(96). 96ra76-96ra76.
    • (2011) Sci. Transl. Med. , vol.3 , Issue.96
    • Dudley, J.T.1    Sirota, M.2    Shenoy, M.3    Pai, R.K.4    Roedder, S.5    Chiang, A.P.6    Butte, A.J.7
  • 21
    • 70350227039 scopus 로고    scopus 로고
    • Systematic evaluation of drugdisease relationships to identify leads for novel drug uses
    • Chiang A.P., Butte A.J. Systematic evaluation of drugdisease relationships to identify leads for novel drug uses. Clin. Pharmaco. Ther. 2009, 86(5):507-510.
    • (2009) Clin. Pharmaco. Ther. , vol.86 , Issue.5 , pp. 507-510
    • Chiang, A.P.1    Butte, A.J.2
  • 22
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos M., Kuhn M., Gavin A.C., Jensen L.J., Bork P. Drug target identification using side-effect similarity. Science 2008, 321(5886):263-266.
    • (2008) Science , vol.321 , Issue.5886 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.C.3    Jensen, L.J.4    Bork, P.5
  • 23
    • 84856055845 scopus 로고    scopus 로고
    • Recycling side-effects into clinical markers for drug repositioning
    • Duran-Frigola M., Aloy P. Recycling side-effects into clinical markers for drug repositioning. Genome Med. 2012, 4(3).
    • (2012) Genome Med. , vol.4 , Issue.3
    • Duran-Frigola, M.1    Aloy, P.2
  • 25
    • 77957273984 scopus 로고    scopus 로고
    • Animal models of neuropsychiatric disorders
    • Nestler E.J., Hyman S.E. Animal models of neuropsychiatric disorders. Nat. Neurosci. 2010, 13:1161-1169.
    • (2010) Nat. Neurosci. , vol.13 , pp. 1161-1169
    • Nestler, E.J.1    Hyman, S.E.2
  • 26
    • 84878514642 scopus 로고    scopus 로고
    • Large-scale extraction of drug-disease treatment pairs from biomedical literature for drug repurposing
    • Xu R., Wang Q. Large-scale extraction of drug-disease treatment pairs from biomedical literature for drug repurposing. BMC Bioinformatics 2013, 14(1):181.
    • (2013) BMC Bioinformatics , vol.14 , Issue.1 , pp. 181
    • Xu, R.1    Wang, Q.2
  • 27
    • 84882647236 scopus 로고    scopus 로고
    • Towards building a disease-phenotype relationship knowledge base: large scale extraction of disease-manifestation relationship from literature
    • Xu R., Li L., Wang Q. Towards building a disease-phenotype relationship knowledge base: large scale extraction of disease-manifestation relationship from literature. Bioinformatics 2013, 10.1093/bioinformatics/btt359.
    • (2013) Bioinformatics
    • Xu, R.1    Li, L.2    Wang, Q.3
  • 28
    • 84895421624 scopus 로고    scopus 로고
    • Automatic signal prioritizing and filtering approaches in detecting post-marketing cardiovascular events associated with targeted cancer drugs from the FDA Adverse Event Reporting System (FAERS)
    • Xu R., Wang Q. Automatic signal prioritizing and filtering approaches in detecting post-marketing cardiovascular events associated with targeted cancer drugs from the FDA Adverse Event Reporting System (FAERS). J. Biomed. Inf. 2014, 171-177.
    • (2014) J. Biomed. Inf. , pp. 171-177
    • Xu, R.1    Wang, Q.2
  • 29
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease
    • Robinson P.N., Kohler S., Bauer S., Seelow D., Horn D., Mundlos S. The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am. J. Human Genet. 2008, 83(5):610-615.
    • (2008) Am. J. Human Genet. , vol.83 , Issue.5 , pp. 610-615
    • Robinson, P.N.1    Kohler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 30
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh A., Scott A.F., Amberger J.S., Bocchini C.A., McKusick V.A. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 2005, 33(suppl 1):D514-D517.
    • (2005) Nucleic Acids Res. , vol.33 , pp. D514-D517
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 31
  • 33
    • 84863987708 scopus 로고    scopus 로고
    • Computational tools for prioritizing candidate genes: boosting disease gene discovery
    • Moreau Y., Tranchevent L.C. Computational tools for prioritizing candidate genes: boosting disease gene discovery. Nat. Rev. Genet. 2010, 13(8):523-536.
    • (2010) Nat. Rev. Genet. , vol.13 , Issue.8 , pp. 523-536
    • Moreau, Y.1    Tranchevent, L.C.2
  • 34
    • 79958754253 scopus 로고    scopus 로고
    • PREDICT: a method for inferring novel drug indications with application to personalized medicine
    • Gottlieb A., Stein G.Y., Ruppin E., Sharan R. PREDICT: a method for inferring novel drug indications with application to personalized medicine. Mol. Syst. Biol. 2011, 7(1):55.
    • (2011) Mol. Syst. Biol. , vol.7 , Issue.1 , pp. 55
    • Gottlieb, A.1    Stein, G.Y.2    Ruppin, E.3    Sharan, R.4
  • 35
    • 0345863927 scopus 로고    scopus 로고
    • The unified medical language system (UMLS): integrating biomedical terminology
    • Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004, 32(suppl 1):D267-D270.
    • (2004) Nucleic Acids Res. , vol.32 , pp. D267-D270
    • Bodenreider, O.1
  • 36
    • 84938669583 scopus 로고    scopus 로고
    • Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery
    • December 4-6, San Antonio, TX.
    • Y. Chen, R. Xu, Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery, in: International Conference on Intelligent Biology and Medicine (ICIBM 2014), December 4-6, San Antonio, TX.
    • International Conference on Intelligent Biology and Medicine (ICIBM 2014)
    • Chen, Y.1    Xu, R.2
  • 37
    • 84938669584 scopus 로고    scopus 로고
    • Genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat
    • December 4-6, San Antonio, TX.
    • R. Xu, Q. Wang, L. Li, Genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat, In: International Conference on Intelligent Biology and Medicine (ICIBM 2014), December 4-6, San Antonio, TX.
    • International Conference on Intelligent Biology and Medicine (ICIBM 2014)
    • Xu, R.1    Wang, Q.2    Li, L.3
  • 38
    • 84938669585 scopus 로고
    • ICD-10: International Statistical Classification of Diseases and Related Health Problems: 10th Revision, World Health Organization, 1992.
    • (1992)
  • 43
    • 13844290472 scopus 로고    scopus 로고
    • The Anatomical Therapeutic Chemical Classification System with Defined Daily Doses (ATC/DDD)
    • WHO, Norway.
    • World Health Organization: The Anatomical Therapeutic Chemical Classification System with Defined Daily Doses (ATC/DDD), WHO, Norway.
  • 44
    • 80052966999 scopus 로고    scopus 로고
    • Understanding the role of inflammatory-related pathways in the pathophysiology and treatment of psychiatric disorders: evidence from human peripheral studies and CNS studies
    • Dean B. Understanding the role of inflammatory-related pathways in the pathophysiology and treatment of psychiatric disorders: evidence from human peripheral studies and CNS studies. Int. J. Neuropsychopharm. 2011, 14(07):997-1012.
    • (2011) Int. J. Neuropsychopharm. , vol.14 , Issue.7 , pp. 997-1012
    • Dean, B.1
  • 45
    • 80053892662 scopus 로고    scopus 로고
    • Anti-inflammatory signaling in schizophrenia
    • Meyer U. Anti-inflammatory signaling in schizophrenia. Brain Behav. Immun. 2011, 25(8):1507-1518.
    • (2011) Brain Behav. Immun. , vol.25 , Issue.8 , pp. 1507-1518
    • Meyer, U.1
  • 46
    • 33745617042 scopus 로고    scopus 로고
    • The cyclooxygenase-2 inhibitor celecoxib has therapeutic effects in major depression: results of a double-blind, randomized, placebo controlled, add-on pilot study to reboxetine
    • Muller N., Schwarz M.J., Dehning S., Douhe A., Cerovecki A., Goldstein-Muller B., Riedel M. The cyclooxygenase-2 inhibitor celecoxib has therapeutic effects in major depression: results of a double-blind, randomized, placebo controlled, add-on pilot study to reboxetine. Mol. Psychiatry 2006, 11(7):680-684.
    • (2006) Mol. Psychiatry , vol.11 , Issue.7 , pp. 680-684
    • Muller, N.1    Schwarz, M.J.2    Dehning, S.3    Douhe, A.4    Cerovecki, A.5    Goldstein-Muller, B.6    Riedel, M.7
  • 47
    • 84863980709 scopus 로고    scopus 로고
    • Genetic architectures of psychiatric disorders: the emerging picture and its implications
    • Sullivan P.F., Daly M.J., O'Donovan M. Genetic architectures of psychiatric disorders: the emerging picture and its implications. Nat. Rev. Genet. 2012, 13(8):537-551.
    • (2012) Nat. Rev. Genet. , vol.13 , Issue.8 , pp. 537-551
    • Sullivan, P.F.1    Daly, M.J.2    O'Donovan, M.3
  • 48
    • 0033965038 scopus 로고    scopus 로고
    • Efficacy of Beta-blocker supplementation for schizophrenia: a systematic review of randomized trials
    • Wahlbeck K., Cheine M.V., Gilbody S., Ahonen J. Efficacy of Beta-blocker supplementation for schizophrenia: a systematic review of randomized trials. Schizophr. Res. 2000, 41(2):341-347.
    • (2000) Schizophr. Res. , vol.41 , Issue.2 , pp. 341-347
    • Wahlbeck, K.1    Cheine, M.V.2    Gilbody, S.3    Ahonen, J.4
  • 50
    • 18044368493 scopus 로고    scopus 로고
    • Angiotensin-converting enzyme (ACE) interacts with dopaminergic mechanisms in the brain to modulate prepulse inhibition in mice
    • van den Buuse M., Zheng T.W., Walker L.L., Denton D.A. Angiotensin-converting enzyme (ACE) interacts with dopaminergic mechanisms in the brain to modulate prepulse inhibition in mice. Neurosci. Lett. 2005, 380(1):6-11.
    • (2005) Neurosci. Lett. , vol.380 , Issue.1 , pp. 6-11
    • van den Buuse, M.1    Zheng, T.W.2    Walker, L.L.3    Denton, D.A.4
  • 51
    • 0023161147 scopus 로고
    • Functions of angiotensin in the central nervous system
    • Phillips I.M. Functions of angiotensin in the central nervous system. Annu. Rev. Physiol. 1987, 49(1):413-433.
    • (1987) Annu. Rev. Physiol. , vol.49 , Issue.1 , pp. 413-433
    • Phillips, I.M.1
  • 52
    • 0027957903 scopus 로고
    • Angiotensin converting enzyme inhibitors as potential cognitive enhancing agents
    • Domeney A.M. Angiotensin converting enzyme inhibitors as potential cognitive enhancing agents. J. Psychiatry Neurosci. 1994, 19(1):46.
    • (1994) J. Psychiatry Neurosci. , vol.19 , Issue.1 , pp. 46
    • Domeney, A.M.1
  • 53
    • 84899480100 scopus 로고    scopus 로고
    • DRiskKB: a large-scale disease-disease risk relationship knowledge base constructed from biomedical text
    • Xu R., Li L., Wang Q. dRiskKB: a large-scale disease-disease risk relationship knowledge base constructed from biomedical text. BMC Bioinformatics 2014, 15(1):105.
    • (2014) BMC Bioinformatics , vol.15 , Issue.1 , pp. 105
    • Xu, R.1    Li, L.2    Wang, Q.3
  • 54
    • 84924524532 scopus 로고    scopus 로고
    • Comparative analysis of a novel disease phenotype network based on clinical manifestations
    • Chen Y., Zhang X., Zhang G.Q., Xu R. Comparative analysis of a novel disease phenotype network based on clinical manifestations. J. Biomed. Inform. 2015, 53:113-120. 10.1016/j.jbi.2014.09.007.
    • (2015) J. Biomed. Inform. , vol.53 , pp. 113-120
    • Chen, Y.1    Zhang, X.2    Zhang, G.Q.3    Xu, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.