메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL ABSTRACTS; BIOMEDICAL LITERATURE; BIOMEDICAL RESEARCH; COMPUTATIONAL APPROACH; RELATIONSHIP EXTRACTION; RELATIONSHIP KNOWLEDGE; STRUCTURED DATABASE; THERAPEUTIC CLASS;

EID: 84878514642     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-181     Document Type: Article
Times cited : (88)

References (31)
  • 1
    • 4344668661 scopus 로고    scopus 로고
    • Drug repositioning: identifying and developing new uses for existing drugs
    • 10.1038/nrd1468, 15286734
    • Ashburn TT, Thor KB. Drug repositioning: identifying and developing new uses for existing drugs. Nat Rev Drug Discov 2004, 3:673-83. 10.1038/nrd1468, 15286734.
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 673-683
    • Ashburn, T.T.1    Thor, K.B.2
  • 2
    • 0029128834 scopus 로고
    • Success rates for new drugs entering clinical testing in the United States
    • 10.1016/0009-9236(95)90066-7, 7628176
    • DiMasi J. Success rates for new drugs entering clinical testing in the United States. Clin Pharmacol Ther 1995, 58:1-14. 10.1016/0009-9236(95)90066-7, 7628176.
    • (1995) Clin Pharmacol Ther , vol.58 , pp. 1-14
    • DiMasi, J.1
  • 3
    • 79960796417 scopus 로고    scopus 로고
    • Exploiting drug-disease relationships for computational drug repositioning
    • 10.1093/bib/bbr013, 3137933, 21690101
    • Dudley J, Deshpande T, Butte AJ. Exploiting drug-disease relationships for computational drug repositioning. Brief Bioinform 2011, 12:303-311. 10.1093/bib/bbr013, 3137933, 21690101.
    • (2011) Brief Bioinform , vol.12 , pp. 303-311
    • Dudley, J.1    Deshpande, T.2    Butte, A.J.3
  • 4
    • 70449634957 scopus 로고    scopus 로고
    • Predicting new molecular targets for known drugs
    • 10.1038/nature08506, 2784146, 19881490
    • Keiser MJ, Setola V, Irwin JJ. Predicting new molecular targets for known drugs. Nature 2009, 462:175-81. 10.1038/nature08506, 2784146, 19881490.
    • (2009) Nature , vol.462 , pp. 175-181
    • Keiser, M.J.1    Setola, V.2    Irwin, J.J.3
  • 5
    • 33750357203 scopus 로고    scopus 로고
    • Predicting compound selectivity by self-organizing maps: cross-activities of metabotropic glutamate receptor antagonists
    • Noeske T, Sasse BC, Stark H. Predicting compound selectivity by self-organizing maps: cross-activities of metabotropic glutamate receptor antagonists. Chem Med Chem 2006, 1:1066-8.
    • (2006) Chem Med Chem , vol.1 , pp. 1066-1068
    • Noeske, T.1    Sasse, B.C.2    Stark, H.3
  • 6
    • 33749335282 scopus 로고    scopus 로고
    • The connectivity map: using gene-expression signatures to connect small molecules, genes, and disease
    • 10.1126/science.1132939, 17008526
    • Lamb J, Crawford ED, Peck D. The connectivity map: using gene-expression signatures to connect small molecules, genes, and disease. Science 2006, 313:1929-35. 10.1126/science.1132939, 17008526.
    • (2006) Science , vol.313 , pp. 1929-1935
    • Lamb, J.1    Crawford, E.D.2    Peck, D.3
  • 7
    • 70349914727 scopus 로고    scopus 로고
    • PubChem as a source of polypharmacology
    • 10.1021/ci9001876, 19708682
    • Chen B, Wild D, Guha R. PubChem as a source of polypharmacology. J Chem Inf Model 2009, 49:2044-55. 10.1021/ci9001876, 19708682.
    • (2009) J Chem Inf Model , vol.49 , pp. 2044-2055
    • Chen, B.1    Wild, D.2    Guha, R.3
  • 8
    • 68249144628 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
    • 10.1371/journal.pcbi.1000423, 2699117, 19578428
    • Kinnings SL, Liu N, Buchmeier N, Tonge PJ, Xie L, Bourne PE. Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis. PLoS computational biology 2009, 5(7):e1000423. 10.1371/journal.pcbi.1000423, 2699117, 19578428.
    • (2009) PLoS computational biology , vol.5 , Issue.7
    • Kinnings, S.L.1    Liu, N.2    Buchmeier, N.3    Tonge, P.J.4    Xie, L.5    Bourne, P.E.6
  • 10
    • 68449088145 scopus 로고    scopus 로고
    • Human disease-drug network based on genomic expression profiles
    • 10.1371/journal.pone.0006536, 2715883, 19657382, Hu
    • Agarwal P, Hu Human disease-drug network based on genomic expression profiles. PLoS One 2009, 4:e6536. [http://dx.doi.org/10.1371/journal.pone.0006536 ], 10.1371/journal.pone.0006536, 2715883, 19657382, Hu.
    • (2009) PLoS One , vol.4
    • Agarwal, P.1
  • 11
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • 10.1126/science.1158140, 18621671
    • Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P. Drug target identification using side-effect similarity. Science 2008, 321:263-266. 10.1126/science.1158140, 18621671.
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.C.3    Jensen, L.J.4    Bork, P.5
  • 12
    • 70350227039 scopus 로고    scopus 로고
    • Systematic evaluation of drug-disease relationships to identify leads for novel drug uses
    • 10.1038/clpt.2009.103, 2836384, 19571805
    • Chiang AP, Butte AJ. Systematic evaluation of drug-disease relationships to identify leads for novel drug uses. Clin Pharmacol Ther 2009, 86:507-10. 10.1038/clpt.2009.103, 2836384, 19571805.
    • (2009) Clin Pharmacol Ther , vol.86 , pp. 507-510
    • Chiang, A.P.1    Butte, A.J.2
  • 13
    • 33644685442 scopus 로고    scopus 로고
    • The major role of clinicians in the discovery of off-label drug therapies
    • 10.1592/phco.26.3.323, 16503712
    • DeMonaco HJ, Ali A, von Hippel E. The major role of clinicians in the discovery of off-label drug therapies. Pharmacotherapy 2006, 26:323-332. 10.1592/phco.26.3.323, 16503712.
    • (2006) Pharmacotherapy , vol.26 , pp. 323-332
    • DeMonaco, H.J.1    Ali, A.2    von Hippel, E.3
  • 14
    • 36348990139 scopus 로고    scopus 로고
    • Frontiers of biomedical text mining: current progress
    • 10.1093/bib/bbm045, 2516302, 17977867, HYu
    • Zweigenbaum P, Demner-Fushman D, Cohen K, HYu Frontiers of biomedical text mining: current progress. Brief Bioinform 2007, 8(5):358-375. 10.1093/bib/bbm045, 2516302, 17977867, HYu.
    • (2007) Brief Bioinform , vol.8 , Issue.5 , pp. 358-375
    • Zweigenbaum, P.1    Demner-Fushman, D.2    Cohen, K.3
  • 15
    • 0033292011 scopus 로고    scopus 로고
    • Automatic extraction of biological information from scientific text: protein-protein interactions
    • Blaschke C, Andrade MA, Ouzounis C, Valencia A. Automatic extraction of biological information from scientific text: protein-protein interactions. roc Int Conf Intell Syst Mol Bio 1999, (7), 60-67.
    • (1999) roc Int Conf Intell Syst Mol Bio , pp. 60-67
    • Blaschke, C.1    Andrade, M.A.2    Ouzounis, C.3    Valencia, A.4
  • 16
    • 0035236048 scopus 로고    scopus 로고
    • Genies: a natural-language processing system for the extraction of molecular pathways from journal articles
    • 10.1093/bioinformatics/17.suppl_1.S74, 11472995
    • Friedman C, Kra P, Yu H, Krauthammer M, Rzhetzky A. Genies: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 2001, 17(suppl 1):S74-S82. 10.1093/bioinformatics/17.suppl_1.S74, 11472995.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Friedman, C.1    Kra, P.2    Yu, H.3    Krauthammer, M.4    Rzhetzky, A.5
  • 18
    • 84865989623 scopus 로고    scopus 로고
    • A knowledge-driven conditional approach to extract pharmacogenomics specific drug-gene relationships from free text
    • Xu R, Wang Q. A knowledge-driven conditional approach to extract pharmacogenomics specific drug-gene relationships from free text. J of Biomed Inform 2012, 45(5):827-834.
    • (2012) J of Biomed Inform , vol.45 , Issue.5 , pp. 827-834
    • Xu, R.1    Wang, Q.2
  • 19
    • 0027327094 scopus 로고
    • Automatic knowledge acquisition from MEDLINE
    • Cimino J, Barnett G. Automatic knowledge acquisition from MEDLINE. Methods Inf Med 1993, 32:120-130.
    • (1993) Methods Inf Med , vol.32 , pp. 120-130
    • Cimino, J.1    Barnett, G.2
  • 20
    • 45449101453 scopus 로고    scopus 로고
    • Automatic identification of treatment relations for medical ontology learning: An exploratory study
    • Lee C, Khoo C, Na J. Automatic identification of treatment relations for medical ontology learning: An exploratory study. ADVANCES IN KNOWLEDGE ORGANIZATION 2004, (9) 245-250.
    • ADVANCES IN KNOWLEDGE ORGANIZATION 2004, (9) , pp. 245-250
    • Lee, C.1    Khoo, C.2    Na, J.3
  • 23
    • 36749097784 scopus 로고    scopus 로고
    • Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study
    • 2274872, 17947625
    • Chen ES, Hripcsak G, Xu H, Markatou M, Friedman C. Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. J Am Med Inform Assoc 2008, 15:87-98. 2274872, 17947625.
    • (2008) J Am Med Inform Assoc , vol.15 , pp. 87-98
    • Chen, E.S.1    Hripcsak, G.2    Xu, H.3    Markatou, M.4    Friedman, C.5
  • 24
    • 0842283365 scopus 로고    scopus 로고
    • The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text
    • 10.1016/j.jbi.2003.11.003, 14759819
    • Rindflesch TC, Fiszman M. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform 2003, 36:462-477. 10.1016/j.jbi.2003.11.003, 14759819.
    • (2003) J Biomed Inform , vol.36 , pp. 462-477
    • Rindflesch, T.C.1    Fiszman, M.2
  • 26
    • 43749110484 scopus 로고    scopus 로고
    • Extraction of semantic biomedical relations from text using conditional random fields
    • 10.1186/1471-2105-9-207, 2386138, 18433469, MDejori
    • Bundschus M, Kriegel H, MDejori Extraction of semantic biomedical relations from text using conditional random fields. BMC Bioinformatics 2008, 9:207. 10.1186/1471-2105-9-207, 2386138, 18433469, MDejori.
    • (2008) BMC Bioinformatics , vol.9 , pp. 207
    • Bundschus, M.1    Kriegel, H.2
  • 27
    • 84983035827 scopus 로고    scopus 로고
    • A comprehensive analysis of five million UMLS metathesaurus terms using eighteen million MEDLINE citations
    • Xu R, Musen A, Shah N. A comprehensive analysis of five million UMLS metathesaurus terms using eighteen million MEDLINE citations. AMIA Annu Symp Proc. American Medical Informatics Association 2010, 907-911.
    • (2010) AMIA Annu Symp Proc. American Medical Informatics Association , pp. 907-911
    • Xu, R.1    Musen, A.2    Shah, N.3
  • 29
    • 70349881426 scopus 로고    scopus 로고
    • Comparison of concept recognizers for building the open biomedical annotator
    • 10.1186/1471-2105-10-S9-S14, 2762063, 19828074
    • Shah NH, Bhatia N, Jonquet C, Rubin D, Chiang AP, Musen AM. Comparison of concept recognizers for building the open biomedical annotator. BMC Bioinformatics 2009, 10(Suppl 9):S14. 10.1186/1471-2105-10-S9-S14, 2762063, 19828074.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 9
    • Shah, N.H.1    Bhatia, N.2    Jonquet, C.3    Rubin, D.4    Chiang, A.P.5    Musen, A.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.