메뉴 건너뛰기




Volumn 88, Issue 6, 2015, Pages 561-572

Comparison of CRISPR/Cas9 expression constructs for efficient targeted mutagenesis in rice

Author keywords

CRISPR Cas9; Genome editing; Rice; Targeted mutagenesis

Indexed keywords

CASPASE 9; GUIDE RNA; PLANT RNA;

EID: 84938551854     PISSN: 01674412     EISSN: 15735028     Source Type: Journal    
DOI: 10.1007/s11103-015-0342-x     Document Type: Article
Times cited : (230)

References (33)
  • 1
    • 84921594086 scopus 로고    scopus 로고
    • Enabling plant synthetic biology through genome engineering
    • PID: 25496918
    • Baltes NJ, Voytas DF (2014) Enabling plant synthetic biology through genome engineering. Trends Biotechnol 33:120–131
    • (2014) Trends Biotechnol , vol.33 , pp. 120-131
    • Baltes, N.J.1    Voytas, D.F.2
  • 2
    • 84885353478 scopus 로고    scopus 로고
    • Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system
    • PID: 24112467
    • Belhaj K, Chaparro-Garcia A, Kamoun S, Nekrasov V (2013) Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods 9:39
    • (2013) Plant Methods , vol.9 , pp. 39
    • Belhaj, K.1    Chaparro-Garcia, A.2    Kamoun, S.3    Nekrasov, V.4
  • 3
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • COI: 1:CAS:528:DC%2BC3sXhsFGhsL8%3D, PID: 23360966
    • Cho SW, Kim S, Kim JM, Kim JS (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat Biotechnol 31:230–232
    • (2013) Nat Biotechnol , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 5
    • 84922664019 scopus 로고    scopus 로고
    • Multigene knockout utilizing off-target mutations of the CRISPR/Cas9 system in rice
    • PID: 25392068
    • Endo M, Mikami M, Toki S (2015) Multigene knockout utilizing off-target mutations of the CRISPR/Cas9 system in rice. Plant Cell Physiol 56:41–47
    • (2015) Plant Cell Physiol , vol.56 , pp. 41-47
    • Endo, M.1    Mikami, M.2    Toki, S.3
  • 6
    • 84904068340 scopus 로고    scopus 로고
    • Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BC2cXhtFWjtL3N, PID: 24836556
    • Fauser F, Schiml S, Puchta H (2014) Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J 79:348–359
    • (2014) Plant J , vol.79 , pp. 348-359
    • Fauser, F.1    Schiml, S.2    Puchta, H.3
  • 9
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • COI: 1:CAS:528:DC%2BC3sXhsFCkurY%3D, PID: 23360965
    • Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA (2013a) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31:233–239
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 10
    • 84886926151 scopus 로고    scopus 로고
    • Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice
    • COI: 1:CAS:528:DC%2BC3sXhslWrt73E, PID: 23999092
    • Jiang W, Zhou H, Bi H, Fromm M, Yang B, Weeks DP (2013b) Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Nucleic Acids Res 41:e188
    • (2013) Nucleic Acids Res , vol.41 , pp. e188
    • Jiang, W.1    Zhou, H.2    Bi, H.3    Fromm, M.4    Yang, B.5    Weeks, D.P.6
  • 11
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • COI: 1:CAS:528:DC%2BC38XhtFOqsb3L, PID: 22745249
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337:816–821
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 12
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • PID: 23386978
    • Jinek M, East A, Cheng A, Lin S, Ma E, Doudna J (2013) RNA-programmed genome editing in human cells. Elife 2:e00471
    • (2013) Elife , vol.2 , pp. e00471
    • Jinek, M.1    East, A.2    Cheng, A.3    Lin, S.4    Ma, E.5    Doudna, J.6
  • 13
    • 84878490390 scopus 로고    scopus 로고
    • A rapid assay to quantify the cleavage efficiency of custom-designed nucleases in planta
    • COI: 1:CAS:528:DC%2BC3sXosFKqs7w%3D, PID: 23625357
    • Johnson RA, Gurevich V, Levy AA (2013) A rapid assay to quantify the cleavage efficiency of custom-designed nucleases in planta. Plant Mol Biol 82:207–221
    • (2013) Plant Mol Biol , vol.82 , pp. 207-221
    • Johnson, R.A.1    Gurevich, V.2    Levy, A.A.3
  • 14
    • 85027948074 scopus 로고    scopus 로고
    • Comparative assessments of CRISPR-Cas nucleases’ cleavage efficiency in planta
    • PID: 25403732
    • Johnson RA, Gurevich V, Filler S, Samach A, Levy AA (2014) Comparative assessments of CRISPR-Cas nucleases’ cleavage efficiency in planta. Plant Mol Biol 87:143–156
    • (2014) Plant Mol Biol , vol.87 , pp. 143-156
    • Johnson, R.A.1    Gurevich, V.2    Filler, S.3    Samach, A.4    Levy, A.A.5
  • 15
    • 78649789095 scopus 로고    scopus 로고
    • A simple set of plasmids for the production of transgenic plants
    • COI: 1:CAS:528:DC%2BC3cXhsFGgu73O, PID: 21071849
    • Kuroda M, Kimizu M, Mikami C (2010) A simple set of plasmids for the production of transgenic plants. Biosci Biotechnol Biochem 74:2348–2351
    • (2010) Biosci Biotechnol Biochem , vol.74 , pp. 2348-2351
    • Kuroda, M.1    Kimizu, M.2    Mikami, C.3
  • 16
    • 84883785822 scopus 로고    scopus 로고
    • Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
    • COI: 1:CAS:528:DC%2BC3sXht1Cgs7jM, PID: 23929339
    • Li JF, Norville JE, Aach J, McCormack M, Zhang D, Bush J, Church GM, Sheen J (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol 31:688–691
    • (2013) Nat Biotechnol , vol.31 , pp. 688-691
    • Li, J.F.1    Norville, J.E.2    Aach, J.3    McCormack, M.4    Zhang, D.5    Bush, J.6    Church, G.M.7    Sheen, J.8
  • 18
    • 84891932593 scopus 로고    scopus 로고
    • Application of the CRISPRCas system for efficient genome engineering in plants
    • COI: 1:CAS:528:DC%2BC3sXhvVart7vN, PID: 23963532
    • Mao Y, Zhang H, Xu N, Zhang B, Gao F, Zhu JK (2013) Application of the CRISPRCas system for efficient genome engineering in plants. Mol Plant 6:2008–2011
    • (2013) Mol Plant , vol.6 , pp. 2008-2011
    • Mao, Y.1    Zhang, H.2    Xu, N.3    Zhang, B.4    Gao, F.5    Zhu, J.K.6
  • 19
  • 20
    • 84941941829 scopus 로고    scopus 로고
    • Parameters affecting frequency of CRISPR/Cas9 mediated targeted mutagenesis in rice
    • PID: 26134856, (in press)
    • Mikami M, Toki S, Endo M (2015) Parameters affecting frequency of CRISPR/Cas9 mediated targeted mutagenesis in rice. Plant Cell Rep. doi:10.1007/s00299-015-1826-5(in press)
    • (2015) Plant Cell Rep
    • Mikami, M.1    Toki, S.2    Endo, M.3
  • 22
    • 84883828590 scopus 로고    scopus 로고
    • Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
    • COI: 1:CAS:528:DC%2BC3sXht1CgtrnP, PID: 23929340
    • Nekrasov V, Staskawicz B, Weigel D, Jones JD, Kamoun S (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol 31:691–693
    • (2013) Nat Biotechnol , vol.31 , pp. 691-693
    • Nekrasov, V.1    Staskawicz, B.2    Weigel, D.3    Jones, J.D.4    Kamoun, S.5
  • 23
    • 78650595335 scopus 로고    scopus 로고
    • Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice
    • COI: 1:CAS:528:DC%2BC3MXhtV2rsb0%3D, PID: 21175891
    • Ohmori Y, Toriba T, Nakamura H, Ichikawa H, Hirano H-Y (2011) Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice. Plant J 65:77–86
    • (2011) Plant J , vol.65 , pp. 77-86
    • Ohmori, Y.1    Toriba, T.2    Nakamura, H.3    Ichikawa, H.4    Hirano, H.-Y.5
  • 25
    • 74049125022 scopus 로고    scopus 로고
    • Effect of the sequence context of the AUG initiation codon on the rate of translation in dicotyledonous and monocotyledonous plant cells
    • Sugio T, Matsuura H, Matsui T, Matsunaga M, Nosho T, Kanaya S, Shinmyo A, Kato K (2009) Effect of the sequence context of the AUG initiation codon on the rate of translation in dicotyledonous and monocotyledonous plant cells. J Biosci Bioeng 109:170–173
    • (2009) J Biosci Bioeng , vol.109 , pp. 170-173
    • Sugio, T.1    Matsuura, H.2    Matsui, T.3    Matsunaga, M.4    Nosho, T.5    Kanaya, S.6    Shinmyo, A.7    Kato, K.8
  • 26
    • 0031524467 scopus 로고    scopus 로고
    • Rapid and efficient Agrobacterium-mediated transformation in rice
    • COI: 1:CAS:528:DyaK2sXivVejsbg%3D
    • Toki S (1997) Rapid and efficient Agrobacterium-mediated transformation in rice. Plant Mol Biol Rep 15:16–21
    • (1997) Plant Mol Biol Rep , vol.15 , pp. 16-21
    • Toki, S.1
  • 27
    • 33748319354 scopus 로고    scopus 로고
    • Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice
    • COI: 1:CAS:528:DC%2BD28XhtVylsL%2FE, PID: 16961734
    • Toki S, Hara N, Ono K, Onodera H, Tagiri A, Oka S, Tanaka H (2006) Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice. Plant J 47:969–976
    • (2006) Plant J , vol.47 , pp. 969-976
    • Toki, S.1    Hara, N.2    Ono, K.3    Onodera, H.4    Tagiri, A.5    Oka, S.6    Tanaka, H.7
  • 28
    • 42449086420 scopus 로고    scopus 로고
    • Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants
    • COI: 1:CAS:528:DC%2BD1cXls1Wrtrc%3D, PID: 18367720
    • Wang MB, Helliwell CA, Wu LM, Waterhouse PM, Peacock WJ, Dennis ES (2008) Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants. RNA 14:903–913
    • (2008) RNA , vol.14 , pp. 903-913
    • Wang, M.B.1    Helliwell, C.A.2    Wu, L.M.3    Waterhouse, P.M.4    Peacock, W.J.5    Dennis, E.S.6
  • 29
    • 84884962826 scopus 로고    scopus 로고
    • RNA-guided genome editing in plants using a CRISPR-Cas system
    • COI: 1:CAS:528:DC%2BC3sXhvVart7vP, PID: 23956122
    • Xie K, Yang Y (2013) RNA-guided genome editing in plants using a CRISPR-Cas system. Mol Plant 6:1975–1983
    • (2013) Mol Plant , vol.6 , pp. 1975-1983
    • Xie, K.1    Yang, Y.2
  • 30
    • 84938551842 scopus 로고    scopus 로고
    • Gene targeting the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice
    • Xu R, Li H, Qin R, Wang L, Li L, Wei P, Yang J (2014) Gene targeting the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice. Rice 7:923–926
    • (2014) Rice , vol.7 , pp. 923-926
    • Xu, R.1    Li, H.2    Qin, R.3    Wang, L.4    Li, L.5    Wei, P.6    Yang, J.7
  • 31
    • 1042290704 scopus 로고    scopus 로고
    • The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa
    • COI: 1:CAS:528:DC%2BD2cXhsFKisL8%3D, PID: 14729915
    • Yamaguchi T, Nagasawa N, Kawasaki S, Matsuoka M, Nagato Y, Hirano H-Y (2004) The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell 16:500–509
    • (2004) Plant Cell , vol.16 , pp. 500-509
    • Yamaguchi, T.1    Nagasawa, N.2    Kawasaki, S.3    Matsuoka, M.4    Nagato, Y.5    Hirano, H.-Y.6
  • 32
    • 84904639258 scopus 로고    scopus 로고
    • The CRISPR/Cas9 system produced specific and homozygous targeted gene editing in rice in one generation
    • COI: 1:CAS:528:DC%2BC2cXht1Wmsr7N, PID: 24854982
    • Zhang H, Zhang J, Wei P, Zhang B, Gou F, Feng Z, Mao Y, Yang L, Zhang H, Xu N, Zhu JK (2014) The CRISPR/Cas9 system produced specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnol J 12:797–807
    • (2014) Plant Biotechnol J , vol.12 , pp. 797-807
    • Zhang, H.1    Zhang, J.2    Wei, P.3    Zhang, B.4    Gou, F.5    Feng, Z.6    Mao, Y.7    Yang, L.8    Zhang, H.9    Xu, N.10    Zhu, J.K.11
  • 33
    • 84921549293 scopus 로고    scopus 로고
    • Large chromosomal deletions heritable small genetic changes induced by CRISPR/Cas9 in rice
    • COI: 1:CAS:528:DC%2BC2MXis1Chtbk%3D, PID: 25200087
    • Zhou H, Liu B, Weeks DP, Spalding MH, Yang B (2014) Large chromosomal deletions heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Res 42:10903–10914
    • (2014) Nucleic Acids Res , vol.42 , pp. 10903-10914
    • Zhou, H.1    Liu, B.2    Weeks, D.P.3    Spalding, M.H.4    Yang, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.