-
1
-
-
0017250270
-
Poly(adenosine diphosphate ribose) is covalently linked to nuclear proteins by two types of bonds
-
Adamietz P., Hilz H. Poly(adenosine diphosphate ribose) is covalently linked to nuclear proteins by two types of bonds. Hoppe Seylers Z. Physiol. Chem. 1976, 357:527-534.
-
(1976)
Hoppe Seylers Z. Physiol. Chem.
, vol.357
, pp. 527-534
-
-
Adamietz, P.1
Hilz, H.2
-
2
-
-
38049064044
-
Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins
-
Ahel I., Ahel D., Matsusaka T., Clark A.J., Pines J., Boulton S.J., West S.C. Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins. Nature 2008, 451:81-85.
-
(2008)
Nature
, vol.451
, pp. 81-85
-
-
Ahel, I.1
Ahel, D.2
Matsusaka, T.3
Clark, A.J.4
Pines, J.5
Boulton, S.J.6
West, S.C.7
-
3
-
-
69949123856
-
Poly(ADP-ribose)-dependent regulation of DNA repair by the chromatin remodeling enzyme ALC1
-
Ahel D., Horejsí Z., Wiechens N., Polo S.E., Garcia-Wilson E., Ahel I., Flynn H., Skehel M., West S.C., Jackson S.P., et al. Poly(ADP-ribose)-dependent regulation of DNA repair by the chromatin remodeling enzyme ALC1. Science 2009, 325:1240-1243.
-
(2009)
Science
, vol.325
, pp. 1240-1243
-
-
Ahel, D.1
Horejsí, Z.2
Wiechens, N.3
Polo, S.E.4
Garcia-Wilson, E.5
Ahel, I.6
Flynn, H.7
Skehel, M.8
West, S.C.9
Jackson, S.P.10
-
4
-
-
67649888368
-
Molecular mechanism of poly(ADP-ribosyl)ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites
-
Altmeyer M., Messner S., Hassa P.O., Fey M., Hottiger M.O. Molecular mechanism of poly(ADP-ribosyl)ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites. Nucleic Acids Res. 2009, 37:3723-3738.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3723-3738
-
-
Altmeyer, M.1
Messner, S.2
Hassa, P.O.3
Fey, M.4
Hottiger, M.O.5
-
5
-
-
0023191708
-
Characterization of polymers of adenosine diphosphate ribose generated in vitro and in vivo
-
Alvarez-Gonzalez R., Jacobson M.K. Characterization of polymers of adenosine diphosphate ribose generated in vitro and in vivo. Biochemistry 1987, 26:3218-3224.
-
(1987)
Biochemistry
, vol.26
, pp. 3218-3224
-
-
Alvarez-Gonzalez, R.1
Jacobson, M.K.2
-
6
-
-
0033580856
-
PARP-2, A novel mammalian DNA damage-dependent poly(ADP-ribose) polymerase
-
Amé J.C., Rolli V., Schreiber V., Niedergang C., Apiou F., Decker P., Muller S., Höger T., Ménissier-de Murcia J., de Murcia G. PARP-2, A novel mammalian DNA damage-dependent poly(ADP-ribose) polymerase. J. Biol. Chem. 1999, 274:17860-17868.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17860-17868
-
-
Amé, J.C.1
Rolli, V.2
Schreiber, V.3
Niedergang, C.4
Apiou, F.5
Decker, P.6
Muller, S.7
Höger, T.8
Ménissier-de Murcia, J.9
de Murcia, G.10
-
7
-
-
70349113034
-
Determination of glycosylation sites and site-specific heterogeneity in glycoproteins
-
An H.J., Froehlich J.W., Lebrilla C.B. Determination of glycosylation sites and site-specific heterogeneity in glycoproteins. Curr. Opin. Chem. Biol. 2009, 13:421-426.
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 421-426
-
-
An, H.J.1
Froehlich, J.W.2
Lebrilla, C.B.3
-
8
-
-
84908205819
-
Poly(ADP-ribose): a signaling molecule in different paradigms of cell death
-
Aredia F., Scovassi A.I. Poly(ADP-ribose): a signaling molecule in different paradigms of cell death. Biochem. Pharmacol. 2014, 92:157-163.
-
(2014)
Biochem. Pharmacol.
, vol.92
, pp. 157-163
-
-
Aredia, F.1
Scovassi, A.I.2
-
9
-
-
84880333185
-
The recognition and removal of cellular poly(ADP-ribose) signals
-
Barkauskaite E., Jankevicius G., Ladurner A.G., Ahel I., Timinszky G. The recognition and removal of cellular poly(ADP-ribose) signals. FEBS J. 2013, 280:3491-3507.
-
(2013)
FEBS J.
, vol.280
, pp. 3491-3507
-
-
Barkauskaite, E.1
Jankevicius, G.2
Ladurner, A.G.3
Ahel, I.4
Timinszky, G.5
-
10
-
-
84857463264
-
Poly(ADP-Ribose) polymerase 1 (PARP-1) regulates ribosomal biogenesis in Drosophila nucleoli
-
Boamah E.K., Kotova E., Garabedian M., Jarnik M., Tulin A.V. Poly(ADP-Ribose) polymerase 1 (PARP-1) regulates ribosomal biogenesis in Drosophila nucleoli. PLoS Genet. 2012, 8:e1002442.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002442
-
-
Boamah, E.K.1
Kotova, E.2
Garabedian, M.3
Jarnik, M.4
Tulin, A.V.5
-
11
-
-
32344452605
-
Precise characterization of human histones in the H2A gene family by top down mass spectrometry
-
Boyne M.T., Pesavento J.J., Mizzen C.A., Kelleher N.L. Precise characterization of human histones in the H2A gene family by top down mass spectrometry. J. Proteome Res. 2006, 5:248-253.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 248-253
-
-
Boyne, M.T.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
12
-
-
0023645755
-
Endogenous polymers of ADP-ribose are associated with the nuclear matrix
-
Cardenas-Corona M.E., Jacobson E.L., Jacobson M.K. Endogenous polymers of ADP-ribose are associated with the nuclear matrix. J. Biol. Chem. 1987, 262:14863-14866.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 14863-14866
-
-
Cardenas-Corona, M.E.1
Jacobson, E.L.2
Jacobson, M.K.3
-
13
-
-
84898015278
-
Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets
-
Carter-O'Connell I., Jin H., Morgan R.K., David L.L., Cohen M.S. Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets. J. Am. Chem. Soc. 2014, 136:5201-5204.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 5201-5204
-
-
Carter-O'Connell, I.1
Jin, H.2
Morgan, R.K.3
David, L.L.4
Cohen, M.S.5
-
14
-
-
0028928197
-
Protein modification by ADP-ribose via acid-labile linkages
-
Cervantes-Laurean D., Loflin P.T., Minter D.E., Jacobson E.L., Jacobson M.K. Protein modification by ADP-ribose via acid-labile linkages. J. Biol. Chem. 1995, 270:7929-7936.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 7929-7936
-
-
Cervantes-Laurean, D.1
Loflin, P.T.2
Minter, D.E.3
Jacobson, E.L.4
Jacobson, M.K.5
-
16
-
-
0031420190
-
Preparation of low molecular weight model conjugates for ADP-ribose linkages to protein
-
Cervantes-Laurean D., Jacobson E.L., Jacobson M.K. Preparation of low molecular weight model conjugates for ADP-ribose linkages to protein. Methods Enzymol. 1997, 280:275-287.
-
(1997)
Methods Enzymol.
, vol.280
, pp. 275-287
-
-
Cervantes-Laurean, D.1
Jacobson, E.L.2
Jacobson, M.K.3
-
17
-
-
84881172533
-
Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search
-
Chandler K.B., Pompach P., Goldman R., Edwards N. Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search. J. Proteome Res. 2013, 12:3652-3666.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 3652-3666
-
-
Chandler, K.B.1
Pompach, P.2
Goldman, R.3
Edwards, N.4
-
18
-
-
10344234720
-
Poly(ADP-ribose) is required for spindle assembly and structure
-
Chang P., Jacobson M.K., Mitchison T.J. Poly(ADP-ribose) is required for spindle assembly and structure. Nature 2004, 432:645-649.
-
(2004)
Nature
, vol.432
, pp. 645-649
-
-
Chang, P.1
Jacobson, M.K.2
Mitchison, T.J.3
-
19
-
-
84875939839
-
Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry
-
Chapman J.D., Gagné J.P., Poirier G.G., Goodlett D.R. Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. J. Proteome Res. 2013, 12:1868-1880.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 1868-1880
-
-
Chapman, J.D.1
Gagné, J.P.2
Poirier, G.G.3
Goodlett, D.R.4
-
20
-
-
79959424627
-
Quantitative, high-resolution proteomics for data-driven systems biology
-
Cox J., Mann M. Quantitative, high-resolution proteomics for data-driven systems biology. Annu. Rev. Biochem. 2011, 80:273-299.
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 273-299
-
-
Cox, J.1
Mann, M.2
-
21
-
-
84886717487
-
Therapeutic applications of PARP inhibitors: anticancer therapy and beyond
-
Curtin N.J., Szabo C. Therapeutic applications of PARP inhibitors: anticancer therapy and beyond. Mol. Aspects Med. 2013, 34:1217-1256.
-
(2013)
Mol. Aspects Med.
, vol.34
, pp. 1217-1256
-
-
Curtin, N.J.1
Szabo, C.2
-
22
-
-
63149116496
-
Combining affinity purification by ADP-ribose-binding macro domains with mass spectrometry to define the mammalian ADP-ribosyl proteome
-
Dani N., Stilla A., Marchegiani A., Tamburro A., Till S., Ladurner A.G., Corda D., Di Girolamo M. Combining affinity purification by ADP-ribose-binding macro domains with mass spectrometry to define the mammalian ADP-ribosyl proteome. Proc. Natl. Acad. Sci. USA 2009, 106:4243-4248.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 4243-4248
-
-
Dani, N.1
Stilla, A.2
Marchegiani, A.3
Tamburro, A.4
Till, S.5
Ladurner, A.G.6
Corda, D.7
Di Girolamo, M.8
-
23
-
-
84905366697
-
Phosphoproteomic approach to characterize protein mono and poly(ADP-ribosyl)ation sites from whole cell lysate
-
Daniels C.M., Ong S.E., Leung A.K. Phosphoproteomic approach to characterize protein mono and poly(ADP-ribosyl)ation sites from whole cell lysate. J. Proteome Res. 2014, 3:3510-3522.
-
(2014)
J. Proteome Res.
, vol.3
, pp. 3510-3522
-
-
Daniels, C.M.1
Ong, S.E.2
Leung, A.K.3
-
24
-
-
0025796808
-
Enzymological properties of poly(ADP-ribose)polymerase: characterization of automodification sites and NADase activity
-
Desmarais Y., Ménard L., Lagueux J., Poirier G.G. Enzymological properties of poly(ADP-ribose)polymerase: characterization of automodification sites and NADase activity. Biochim. Biophys. Acta 1991, 1078:179-186.
-
(1991)
Biochim. Biophys. Acta
, vol.1078
, pp. 179-186
-
-
Desmarais, Y.1
Ménard, L.2
Lagueux, J.3
Poirier, G.G.4
-
25
-
-
33748665458
-
Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains
-
Egloff M.P., Malet H., Putics A., Heinonen M., Dutartre H., Frangeul A., Gruez A., Campanacci V., Cambillau C., Ziebuhr J., et al. Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains. J. Virol. 2006, 80:8493-8502.
-
(2006)
J. Virol.
, vol.80
, pp. 8493-8502
-
-
Egloff, M.P.1
Malet, H.2
Putics, A.3
Heinonen, M.4
Dutartre, H.5
Frangeul, A.6
Gruez, A.7
Campanacci, V.8
Cambillau, C.9
Ziebuhr, J.10
-
26
-
-
37549022999
-
Quantitative analysis of the binding affinity of poly(ADP-ribose) to specific binding proteins as a function of chain length
-
Fahrer J., Kranaster R., Altmeyer M., Marx A., Bürkle A. Quantitative analysis of the binding affinity of poly(ADP-ribose) to specific binding proteins as a function of chain length. Nucleic Acids Res. 2007, 35:e143.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. e143
-
-
Fahrer, J.1
Kranaster, R.2
Altmeyer, M.3
Marx, A.4
Bürkle, A.5
-
27
-
-
84876170804
-
ARTD10 substrate identification on protein microarrays: regulation of GSK3β by mono-ADP-ribosylation
-
Feijs K.L., Kleine H., Braczynski A., Forst A.H., Herzog N., Verheugd P., Linzen U., Kremmer E., Lüscher B. ARTD10 substrate identification on protein microarrays: regulation of GSK3β by mono-ADP-ribosylation. Cell Commun. Signal. 2013, 11:5.
-
(2013)
Cell Commun. Signal.
, vol.11
, pp. 5
-
-
Feijs, K.L.1
Kleine, H.2
Braczynski, A.3
Forst, A.H.4
Herzog, N.5
Verheugd, P.6
Linzen, U.7
Kremmer, E.8
Lüscher, B.9
-
28
-
-
84880324619
-
Expanding functions of intracellular resident mono-ADP-ribosylation in cell physiology
-
Feijs K.L., Verheugd P., Lüscher B. Expanding functions of intracellular resident mono-ADP-ribosylation in cell physiology. FEBS J. 2013, 280:3519-3529.
-
(2013)
FEBS J.
, vol.280
, pp. 3519-3529
-
-
Feijs, K.L.1
Verheugd, P.2
Lüscher, B.3
-
29
-
-
84858631473
-
Selective small molecule inhibition of poly(ADP-ribose) glycohydrolase (PARG)
-
Finch K.E., Knezevic C.E., Nottbohm A.C., Partlow K.C., Hergenrother P.J. Selective small molecule inhibition of poly(ADP-ribose) glycohydrolase (PARG). ACS Chem. Biol. 2012, 7:563-570.
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 563-570
-
-
Finch, K.E.1
Knezevic, C.E.2
Nottbohm, A.C.3
Partlow, K.C.4
Hergenrother, P.J.5
-
30
-
-
84874456032
-
Recognition of mono-ADP-ribosylated ARTD10 substrates by ARTD8 macrodomains
-
Forst A.H., Karlberg T., Herzog N., Thorsell A.G., Gross A., Feijs K.L., Verheugd P., Kursula P., Nijmeijer B., Kremmer E., et al. Recognition of mono-ADP-ribosylated ARTD10 substrates by ARTD8 macrodomains. Structure 2013, 21:462-475.
-
(2013)
Structure
, vol.21
, pp. 462-475
-
-
Forst, A.H.1
Karlberg, T.2
Herzog, N.3
Thorsell, A.G.4
Gross, A.5
Feijs, K.L.6
Verheugd, P.7
Kursula, P.8
Nijmeijer, B.9
Kremmer, E.10
-
31
-
-
58749112769
-
Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes
-
Gagné J.P., Isabelle M., Lo K.S., Bourassa S., Hendzel M.J., Dawson V.L., Dawson T.M., Poirier G.G. Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes. Nucleic Acids Res. 2008, 36:6959-6976.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6959-6976
-
-
Gagné, J.P.1
Isabelle, M.2
Lo, K.S.3
Bourassa, S.4
Hendzel, M.J.5
Dawson, V.L.6
Dawson, T.M.7
Poirier, G.G.8
-
32
-
-
84870539372
-
Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress
-
Gagné J.P., Pic E., Isabelle M., Krietsch J., Ethier C., Paquet E., Kelly I., Boutin M., Moon K.M., Foster L.J., Poirier G.G. Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress. Nucleic Acids Res. 2012, 40:7788-7805.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7788-7805
-
-
Gagné, J.P.1
Pic, E.2
Isabelle, M.3
Krietsch, J.4
Ethier, C.5
Paquet, E.6
Kelly, I.7
Boutin, M.8
Moon, K.M.9
Foster, L.J.10
Poirier, G.G.11
-
33
-
-
84928808446
-
Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs
-
Gagné J.P., Ethier C., Defoy D., Bourassa S., Langelier M.F., Riccio A.A., Pascal J.M., Moon K.M., Foster L.J., Ning Z., et al. Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs. DNA Repair (Amst.) 2015, 30:68-79.
-
(2015)
DNA Repair (Amst.)
, vol.30
, pp. 68-79
-
-
Gagné, J.P.1
Ethier, C.2
Defoy, D.3
Bourassa, S.4
Langelier, M.F.5
Riccio, A.A.6
Pascal, J.M.7
Moon, K.M.8
Foster, L.J.9
Ning, Z.10
-
34
-
-
84885012827
-
PARP inhibitors bounce back
-
Garber K. PARP inhibitors bounce back. Nat. Rev. Drug Discov. 2013, 12:725-727.
-
(2013)
Nat. Rev. Drug Discov.
, vol.12
, pp. 725-727
-
-
Garber, K.1
-
35
-
-
84862758175
-
New insights into the molecular and cellular functions of poly(ADP-ribose) and PARPs
-
Gibson B.A., Kraus W.L. New insights into the molecular and cellular functions of poly(ADP-ribose) and PARPs. Nat. Rev. Mol. Cell Biol. 2012, 13:411-424.
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 411-424
-
-
Gibson, B.A.1
Kraus, W.L.2
-
36
-
-
77954374334
-
Poly(ADP-ribose) polymerase is hyperactivated in homologous recombination-defective cells
-
Gottipati P., Vischioni B., Schultz N., Solomons J., Bryant H.E., Djureinovic T., Issaeva N., Sleeth K., Sharma R.A., Helleday T. Poly(ADP-ribose) polymerase is hyperactivated in homologous recombination-defective cells. Cancer Res. 2010, 70:5389-5398.
-
(2010)
Cancer Res.
, vol.70
, pp. 5389-5398
-
-
Gottipati, P.1
Vischioni, B.2
Schultz, N.3
Solomons, J.4
Bryant, H.E.5
Djureinovic, T.6
Issaeva, N.7
Sleeth, K.8
Sharma, R.A.9
Helleday, T.10
-
37
-
-
84871605560
-
Activation of the SNF2 family ATPase ALC1 by poly(ADP-ribose) in a stable ALC1·PARP1·nucleosome intermediate
-
Gottschalk A.J., Trivedi R.D., Conaway J.W., Conaway R.C. Activation of the SNF2 family ATPase ALC1 by poly(ADP-ribose) in a stable ALC1·PARP1·nucleosome intermediate. J. Biol. Chem. 2012, 287:43527-43532.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 43527-43532
-
-
Gottschalk, A.J.1
Trivedi, R.D.2
Conaway, J.W.3
Conaway, R.C.4
-
38
-
-
83255171058
-
Structural basis and sequence rules for substrate recognition by Tankyrase explain the basis for cherubism disease
-
Guettler S., LaRose J., Petsalaki E., Gish G., Scotter A., Pawson T., Rottapel R., Sicheri F. Structural basis and sequence rules for substrate recognition by Tankyrase explain the basis for cherubism disease. Cell 2011, 147:1340-1354.
-
(2011)
Cell
, vol.147
, pp. 1340-1354
-
-
Guettler, S.1
LaRose, J.2
Petsalaki, E.3
Gish, G.4
Scotter, A.5
Pawson, T.6
Rottapel, R.7
Sicheri, F.8
-
39
-
-
33749260519
-
Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going?
-
Hassa P.O., Haenni S.S., Elser M., Hottiger M.O. Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going?. Microbiol. Mol. Biol. Rev. 2006, 70:789-829.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 789-829
-
-
Hassa, P.O.1
Haenni, S.S.2
Elser, M.3
Hottiger, M.O.4
-
40
-
-
84868157532
-
Structural insight into the interaction of ADP-ribose with the PARP WWE domains
-
He F., Tsuda K., Takahashi M., Kuwasako K., Terada T., Shirouzu M., Watanabe S., Kigawa T., Kobayashi N., Güntert P., et al. Structural insight into the interaction of ADP-ribose with the PARP WWE domains. FEBS Lett. 2012, 586:3858-3864.
-
(2012)
FEBS Lett.
, vol.586
, pp. 3858-3864
-
-
He, F.1
Tsuda, K.2
Takahashi, M.3
Kuwasako, K.4
Terada, T.5
Shirouzu, M.6
Watanabe, S.7
Kigawa, T.8
Kobayashi, N.9
Güntert, P.10
-
41
-
-
84857062060
-
A review of tandem mass spectrometry characterization of adenosine diphosphate-ribosylated peptides
-
Hengel S.M., Goodlett D.R. A review of tandem mass spectrometry characterization of adenosine diphosphate-ribosylated peptides. Int. J. Mass Spectrom. 2012, 312:114-121.
-
(2012)
Int. J. Mass Spectrom.
, vol.312
, pp. 114-121
-
-
Hengel, S.M.1
Goodlett, D.R.2
-
42
-
-
60649085333
-
Tandem mass spectrometry investigation of ADP-ribosylated kemptide
-
Hengel S.M., Shaffer S.A., Nunn B.L., Goodlett D.R. Tandem mass spectrometry investigation of ADP-ribosylated kemptide. J. Am. Soc. Mass Spectrom. 2009, 20:477-483.
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 477-483
-
-
Hengel, S.M.1
Shaffer, S.A.2
Nunn, B.L.3
Goodlett, D.R.4
-
43
-
-
77951023118
-
Toward a unified nomenclature for mammalian ADP-ribosyltransferases
-
Hottiger M.O., Hassa P.O., Lüscher B., Schüler H., Koch-Nolte F. Toward a unified nomenclature for mammalian ADP-ribosyltransferases. Trends Biochem. Sci. 2010, 35:208-219.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 208-219
-
-
Hottiger, M.O.1
Hassa, P.O.2
Lüscher, B.3
Schüler, H.4
Koch-Nolte, F.5
-
45
-
-
84915749291
-
PARP1-driven poly-ADP-ribosylation regulates BRCA1 function in homologous recombination-mediated DNA repair
-
Hu Y., Petit S.A., Ficarro S.B., Toomire K.J., Xie A., Lim E., Cao S.A., Park E., Eck M.J., Scully R., et al. PARP1-driven poly-ADP-ribosylation regulates BRCA1 function in homologous recombination-mediated DNA repair. Cancer Discov. 2014, 4:1430-1447.
-
(2014)
Cancer Discov.
, vol.4
, pp. 1430-1447
-
-
Hu, Y.1
Petit, S.A.2
Ficarro, S.B.3
Toomire, K.J.4
Xie, A.5
Lim, E.6
Cao, S.A.7
Park, E.8
Eck, M.J.9
Scully, R.10
-
46
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
47
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., Beausoleil S.A., Villén J., Haas W., Sowa M.E., Gygi S.P. A tissue-specific atlas of mouse protein phosphorylation and expression. Cell 2010, 143:1174-1189.
-
(2010)
Cell
, vol.143
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
Goswami, T.4
Rad, R.5
Beausoleil, S.A.6
Villén, J.7
Haas, W.8
Sowa, M.E.9
Gygi, S.P.10
-
48
-
-
84872189805
-
Quantitative proteomics and dynamic imaging reveal that G3BP-mediated stress granule assembly is poly(ADP-ribose)-dependent following exposure to MNNG-induced DNA alkylation
-
Isabelle M., Gagné J.P., Gallouzi I.E., Poirier G.G. Quantitative proteomics and dynamic imaging reveal that G3BP-mediated stress granule assembly is poly(ADP-ribose)-dependent following exposure to MNNG-induced DNA alkylation. J. Cell Sci. 2012, 125:4555-4566.
-
(2012)
J. Cell Sci.
, vol.125
, pp. 4555-4566
-
-
Isabelle, M.1
Gagné, J.P.2
Gallouzi, I.E.3
Poirier, G.G.4
-
49
-
-
84876186940
-
A family of macrodomain proteins reverses cellular mono-ADP-ribosylation
-
Jankevicius G., Hassler M., Golia B., Rybin V., Zacharias M., Timinszky G., Ladurner A.G. A family of macrodomain proteins reverses cellular mono-ADP-ribosylation. Nat. Struct. Mol. Biol. 2013, 20:508-514.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 508-514
-
-
Jankevicius, G.1
Hassler, M.2
Golia, B.3
Rybin, V.4
Zacharias, M.5
Timinszky, G.6
Ladurner, A.G.7
-
50
-
-
84886246082
-
Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses
-
Jungmichel S., Rosenthal F., Altmeyer M., Lukas J., Hottiger M.O., Nielsen M.L. Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses. Mol. Cell 2013, 52:272-285.
-
(2013)
Mol. Cell
, vol.52
, pp. 272-285
-
-
Jungmichel, S.1
Rosenthal, F.2
Altmeyer, M.3
Lukas, J.4
Hottiger, M.O.5
Nielsen, M.L.6
-
51
-
-
34848853918
-
Inhibition of Crm1-p53 interaction and nuclear export of p53 by poly(ADP-ribosyl)ation
-
Kanai M., Hanashiro K., Kim S.H., Hanai S., Boulares A.H., Miwa M., Fukasawa K. Inhibition of Crm1-p53 interaction and nuclear export of p53 by poly(ADP-ribosyl)ation. Nat. Cell Biol. 2007, 9:1175-1183.
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 1175-1183
-
-
Kanai, M.1
Hanashiro, K.2
Kim, S.H.3
Hanai, S.4
Boulares, A.H.5
Miwa, M.6
Fukasawa, K.7
-
52
-
-
80052153015
-
Iduna is a poly(ADP-ribose) (PAR)-dependent E3 ubiquitin ligase that regulates DNA damage
-
Kang H.C., Lee Y.I., Shin J.H., Andrabi S.A., Chi Z., Gagné J.P., Lee Y., Ko H.S., Lee B.D., Poirier G.G., et al. Iduna is a poly(ADP-ribose) (PAR)-dependent E3 ubiquitin ligase that regulates DNA damage. Proc. Natl. Acad. Sci. USA 2011, 108:14103-14108.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14103-14108
-
-
Kang, H.C.1
Lee, Y.I.2
Shin, J.H.3
Andrabi, S.A.4
Chi, Z.5
Gagné, J.P.6
Lee, Y.7
Ko, H.S.8
Lee, B.D.9
Poirier, G.G.10
-
53
-
-
21244444665
-
The macro domain is an ADP-ribose binding module
-
Karras G.I., Kustatscher G., Buhecha H.R., Allen M.D., Pugieux C., Sait F., Bycroft M., Ladurner A.G. The macro domain is an ADP-ribose binding module. EMBO J. 2005, 24:1911-1920.
-
(2005)
EMBO J.
, vol.24
, pp. 1911-1920
-
-
Karras, G.I.1
Kustatscher, G.2
Buhecha, H.R.3
Allen, M.D.4
Pugieux, C.5
Sait, F.6
Bycroft, M.7
Ladurner, A.G.8
-
54
-
-
0021774471
-
Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures
-
Kawamitsu H., Hoshino H., Okada H., Miwa M., Momoi H., Sugimura T. Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures. Biochemistry 1984, 23:3771-3777.
-
(1984)
Biochemistry
, vol.23
, pp. 3771-3777
-
-
Kawamitsu, H.1
Hoshino, H.2
Okada, H.3
Miwa, M.4
Momoi, H.5
Sugimura, T.6
-
55
-
-
17444417122
-
Generalized Venn diagrams: a new method of visualizing complex genetic set relations
-
Kestler H.A., Müller A., Gress T.M., Buchholz M. Generalized Venn diagrams: a new method of visualizing complex genetic set relations. Bioinformatics 2005, 21:1592-1595.
-
(2005)
Bioinformatics
, vol.21
, pp. 1592-1595
-
-
Kestler, H.A.1
Müller, A.2
Gress, T.M.3
Buchholz, M.4
-
56
-
-
79551662220
-
Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides
-
Kettenbach A.N., Rush J., Gerber S.A. Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides. Nat. Protoc. 2011, 6:175-186.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 175-186
-
-
Kettenbach, A.N.1
Rush, J.2
Gerber, S.A.3
-
57
-
-
0023609491
-
Relationship of phosphorylation and ADP-ribosylation using a synthetic peptide as a model substrate
-
Kharadia S.V., Graves D.J. Relationship of phosphorylation and ADP-ribosylation using a synthetic peptide as a model substrate. J. Biol. Chem. 1987, 262:17379-17383.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 17379-17383
-
-
Kharadia, S.V.1
Graves, D.J.2
-
58
-
-
0032873278
-
The 193-kD vault protein, VPARP, is a novel poly(ADP-ribose) polymerase
-
Kickhoefer V.A., Siva A.C., Kedersha N.L., Inman E.M., Ruland C., Streuli M., Rome L.H. The 193-kD vault protein, VPARP, is a novel poly(ADP-ribose) polymerase. J. Cell Biol. 1999, 146:917-928.
-
(1999)
J. Cell Biol.
, vol.146
, pp. 917-928
-
-
Kickhoefer, V.A.1
Siva, A.C.2
Kedersha, N.L.3
Inman, E.M.4
Ruland, C.5
Streuli, M.6
Rome, L.H.7
-
59
-
-
84877127509
-
Stereoselective ribosylation of amino acids
-
Kistemaker H.A., van Noort G.J., Overkleeft H.S., van der Marel G.A., Filippov D.V. Stereoselective ribosylation of amino acids. Org. Lett. 2013, 15:2306-2309.
-
(2013)
Org. Lett.
, vol.15
, pp. 2306-2309
-
-
Kistemaker, H.A.1
van Noort, G.J.2
Overkleeft, H.S.3
van der Marel, G.A.4
Filippov, D.V.5
-
60
-
-
84926469934
-
Synthesis of well-defined adenosine diphosphate ribose oligomers
-
Kistemaker H.A., Lameijer L.N., Meeuwenoord N.J., Overkleeft H.S., van der Marel G.A., Filippov D.V. Synthesis of well-defined adenosine diphosphate ribose oligomers. Angew. Chem. Int. Ed. Engl. 2015, 54:4915-4918.
-
(2015)
Angew. Chem. Int. Ed. Engl.
, vol.54
, pp. 4915-4918
-
-
Kistemaker, H.A.1
Lameijer, L.N.2
Meeuwenoord, N.J.3
Overkleeft, H.S.4
van der Marel, G.A.5
Filippov, D.V.6
-
61
-
-
0033546332
-
Identification of critical, conserved vicinal aspartate residues in mammalian and bacterial ADP-ribosylarginine hydrolases
-
Konczalik P., Moss J. Identification of critical, conserved vicinal aspartate residues in mammalian and bacterial ADP-ribosylarginine hydrolases. J. Biol. Chem. 1999, 274:16736-16740.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16736-16740
-
-
Konczalik, P.1
Moss, J.2
-
62
-
-
41949129135
-
Acetylation-dependent ADP-ribosylation by Trypanosoma brucei Sir2
-
Kowieski T.M., Lee S., Denu J.M. Acetylation-dependent ADP-ribosylation by Trypanosoma brucei Sir2. J. Biol. Chem. 2008, 283:5317-5326.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5317-5326
-
-
Kowieski, T.M.1
Lee, S.2
Denu, J.M.3
-
63
-
-
84858733644
-
Strategies for the identification of arginine ADP-ribosylation sites
-
Laing S., Koch-Nolte F., Haag F., Buck F. Strategies for the identification of arginine ADP-ribosylation sites. J. Proteomics 2011, 75:169-176.
-
(2011)
J. Proteomics
, vol.75
, pp. 169-176
-
-
Laing, S.1
Koch-Nolte, F.2
Haag, F.3
Buck, F.4
-
64
-
-
84925273752
-
Synthesis of dimeric ADP-ribose and its structure with human poly(ADP-ribose) glycohydrolase
-
Lambrecht M.J., Brichacek M., Barkauskaite E., Ariza A., Ahel I., Hergenrother P.J. Synthesis of dimeric ADP-ribose and its structure with human poly(ADP-ribose) glycohydrolase. J. Am. Chem. Soc. 2015, 137:3558-3564.
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 3558-3564
-
-
Lambrecht, M.J.1
Brichacek, M.2
Barkauskaite, E.3
Ariza, A.4
Ahel, I.5
Hergenrother, P.J.6
-
65
-
-
84902322535
-
Poly(ADP-ribose): an organizer of cellular architecture
-
Leung A.K. Poly(ADP-ribose): an organizer of cellular architecture. J. Cell Biol. 2014, 205:613-619.
-
(2014)
J. Cell Biol.
, vol.205
, pp. 613-619
-
-
Leung, A.K.1
-
66
-
-
79955957616
-
Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm
-
Leung A.K., Vyas S., Rood J.E., Bhutkar A., Sharp P.A., Chang P. Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm. Mol. Cell 2011, 42:489-499.
-
(2011)
Mol. Cell
, vol.42
, pp. 489-499
-
-
Leung, A.K.1
Vyas, S.2
Rood, J.E.3
Bhutkar, A.4
Sharp, P.A.5
Chang, P.6
-
67
-
-
84921367731
-
Synthetic lethality and cancer therapy: lessons learned from the development of PARP inhibitors
-
Lord C.J., Tutt A.N., Ashworth A. Synthetic lethality and cancer therapy: lessons learned from the development of PARP inhibitors. Annu. Rev. Med. 2015, 66:455-470.
-
(2015)
Annu. Rev. Med.
, vol.66
, pp. 455-470
-
-
Lord, C.J.1
Tutt, A.N.2
Ashworth, A.3
-
68
-
-
0021345742
-
ADP-ribosylation of transducin by islet-activation protein. Identification of asparagine as the site of ADP-ribosylation
-
Manning D.R., Fraser B.A., Kahn R.A., Gilman A.G. ADP-ribosylation of transducin by islet-activation protein. Identification of asparagine as the site of ADP-ribosylation. J. Biol. Chem. 1984, 259:749-756.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 749-756
-
-
Manning, D.R.1
Fraser, B.A.2
Kahn, R.A.3
Gilman, A.G.4
-
69
-
-
79959363092
-
SIRT6 promotes DNA repair under stress by activating PARP1
-
Mao Z., Hine C., Tian X., Van Meter M., Au M., Vaidya A., Seluanov A., Gorbunova V. SIRT6 promotes DNA repair under stress by activating PARP1. Science 2011, 332:1443-1446.
-
(2011)
Science
, vol.332
, pp. 1443-1446
-
-
Mao, Z.1
Hine, C.2
Tian, X.3
Van Meter, M.4
Au, M.5
Vaidya, A.6
Seluanov, A.7
Gorbunova, V.8
-
70
-
-
84880548789
-
Quantification of cellular poly(ADP-ribosyl)ation by stable isotope dilution mass spectrometry reveals tissue- and drug-dependent stress response dynamics
-
Martello R., Mangerich A., Sass S., Dedon P.C., Bürkle A. Quantification of cellular poly(ADP-ribosyl)ation by stable isotope dilution mass spectrometry reveals tissue- and drug-dependent stress response dynamics. ACS Chem. Biol. 2013, 8:1567-1575.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 1567-1575
-
-
Martello, R.1
Mangerich, A.2
Sass, S.3
Dedon, P.C.4
Bürkle, A.5
-
71
-
-
84888110477
-
ADP-ribosyl-acceptor hydrolase 3 regulates poly (ADP-ribose) degradation and cell death during oxidative stress
-
Mashimo M., Kato J., Moss J. ADP-ribosyl-acceptor hydrolase 3 regulates poly (ADP-ribose) degradation and cell death during oxidative stress. Proc. Natl. Acad. Sci. USA 2013, 110:18964-18969.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 18964-18969
-
-
Mashimo, M.1
Kato, J.2
Moss, J.3
-
72
-
-
84864474310
-
Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites
-
Matic I., Ahel I., Hay R.T. Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites. Nat. Methods 2012, 9:771-772.
-
(2012)
Nat. Methods
, vol.9
, pp. 771-772
-
-
Matic, I.1
Ahel, I.2
Hay, R.T.3
-
73
-
-
0014962494
-
Studies on poly (adenosine diphosphate ribose). V. Mechanism of hydrolysis of poly (adenosine diphosphate ribose) by snake venom phosphodiesterase
-
Matsubara H., Hasegawa S., Fujimura S., Shima T., Sugimura T. Studies on poly (adenosine diphosphate ribose). V. Mechanism of hydrolysis of poly (adenosine diphosphate ribose) by snake venom phosphodiesterase. J. Biol. Chem. 1970, 245:3606-3611.
-
(1970)
J. Biol. Chem.
, vol.245
, pp. 3606-3611
-
-
Matsubara, H.1
Hasegawa, S.2
Fujimura, S.3
Shima, T.4
Sugimura, T.5
-
74
-
-
0028044188
-
Enzymatic and nonenzymatic ADP-ribosylation of cysteine
-
McDonald L.J., Moss J. Enzymatic and nonenzymatic ADP-ribosylation of cysteine. Mol. Cell. Biochem. 1994, 138:221-226.
-
(1994)
Mol. Cell. Biochem.
, vol.138
, pp. 221-226
-
-
McDonald, L.J.1
Moss, J.2
-
75
-
-
80052172007
-
Histone ADP-ribosylation in DNA repair, replication and transcription
-
Messner S., Hottiger M.O. Histone ADP-ribosylation in DNA repair, replication and transcription. Trends Cell Biol. 2011, 21:534-542.
-
(2011)
Trends Cell Biol.
, vol.21
, pp. 534-542
-
-
Messner, S.1
Hottiger, M.O.2
-
76
-
-
78049376054
-
PARP1 ADP-ribosylates lysine residues of the core histone tails
-
Messner S., Altmeyer M., Zhao H., Pozivil A., Roschitzki B., Gehrig P., Rutishauser D., Huang D., Caflisch A., Hottiger M.O. PARP1 ADP-ribosylates lysine residues of the core histone tails. Nucleic Acids Res. 2010, 38:6350-6362.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6350-6362
-
-
Messner, S.1
Altmeyer, M.2
Zhao, H.3
Pozivil, A.4
Roschitzki, B.5
Gehrig, P.6
Rutishauser, D.7
Huang, D.8
Caflisch, A.9
Hottiger, M.O.10
-
77
-
-
78649815064
-
Deletion of the nuclear isoform of poly(ADP-ribose) glycohydrolase (PARG) reveals its function in DNA repair, genomic stability and tumorigenesis
-
Min W., Cortes U., Herceg Z., Tong W.M., Wang Z.Q. Deletion of the nuclear isoform of poly(ADP-ribose) glycohydrolase (PARG) reveals its function in DNA repair, genomic stability and tumorigenesis. Carcinogenesis 2010, 31:2058-2065.
-
(2010)
Carcinogenesis
, vol.31
, pp. 2058-2065
-
-
Min, W.1
Cortes, U.2
Herceg, Z.3
Tong, W.M.4
Wang, Z.Q.5
-
78
-
-
38049007502
-
Feedback-regulated poly(ADP-ribosyl)ation by PARP-1 is required for rapid response to DNA damage in living cells
-
Mortusewicz O., Amé J.C., Schreiber V., Leonhardt H. Feedback-regulated poly(ADP-ribosyl)ation by PARP-1 is required for rapid response to DNA damage in living cells. Nucleic Acids Res. 2007, 35:7665-7675.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7665-7675
-
-
Mortusewicz, O.1
Amé, J.C.2
Schreiber, V.3
Leonhardt, H.4
-
80
-
-
0026714597
-
Molecular and immunological characterization of ADP-ribosylarginine hydrolases
-
Moss J., Stanley S.J., Nightingale M.S., Murtagh J.J., Monaco L., Mishima K., Chen H.C., Williamson K.C., Tsai S.C. Molecular and immunological characterization of ADP-ribosylarginine hydrolases. J. Biol. Chem. 1992, 267:10481-10488.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 10481-10488
-
-
Moss, J.1
Stanley, S.J.2
Nightingale, M.S.3
Murtagh, J.J.4
Monaco, L.5
Mishima, K.6
Chen, H.C.7
Williamson, K.C.8
Tsai, S.C.9
-
81
-
-
78449259404
-
Method for the synthesis of mono-ADP-ribose conjugated peptides
-
Moyle P.M., Muir T.W. Method for the synthesis of mono-ADP-ribose conjugated peptides. J. Am. Chem. Soc. 2010, 132:15878-15880.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 15878-15880
-
-
Moyle, P.M.1
Muir, T.W.2
-
82
-
-
33750065699
-
The structure of human ADP-ribosylhydrolase 3 (ARH3) provides insights into the reversibility of protein ADP-ribosylation
-
Mueller-Dieckmann C., Kernstock S., Lisurek M., von Kries J.P., Haag F., Weiss M.S., Koch-Nolte F. The structure of human ADP-ribosylhydrolase 3 (ARH3) provides insights into the reversibility of protein ADP-ribosylation. Proc. Natl. Acad. Sci. USA 2006, 103:15026-15031.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15026-15031
-
-
Mueller-Dieckmann, C.1
Kernstock, S.2
Lisurek, M.3
von Kries, J.P.4
Haag, F.5
Weiss, M.S.6
Koch-Nolte, F.7
-
83
-
-
79960954611
-
Stress-induced PARP activation mediates recruitment of Drosophila Mi-2 to promote heat shock gene expression
-
Murawska M., Hassler M., Renkawitz-Pohl R., Ladurner A., Brehm A. Stress-induced PARP activation mediates recruitment of Drosophila Mi-2 to promote heat shock gene expression. PLoS Genet. 2011, 7:e1002206.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002206
-
-
Murawska, M.1
Hassler, M.2
Renkawitz-Pohl, R.3
Ladurner, A.4
Brehm, A.5
-
84
-
-
57749190795
-
Differential activities of cellular and viral macro domain proteins in binding of ADP-ribose metabolites
-
Neuvonen M., Ahola T. Differential activities of cellular and viral macro domain proteins in binding of ADP-ribose metabolites. J. Mol. Biol. 2009, 385:212-225.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 212-225
-
-
Neuvonen, M.1
Ahola, T.2
-
85
-
-
78649874455
-
Structural basis of poly(ADP-ribose) recognition by the multizinc binding domain of checkpoint with forkhead-associated and RING Domains (CHFR)
-
Oberoi J., Richards M.W., Crumpler S., Brown N., Blagg J., Bayliss R. Structural basis of poly(ADP-ribose) recognition by the multizinc binding domain of checkpoint with forkhead-associated and RING Domains (CHFR). J. Biol. Chem. 2010, 285:39348-39358.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 39348-39358
-
-
Oberoi, J.1
Richards, M.W.2
Crumpler, S.3
Brown, N.4
Blagg, J.5
Bayliss, R.6
-
86
-
-
67650472197
-
Mass spectrometric characterization of the covalent modification of the nitrogenase Fe-protein in Azoarcus sp. BH72
-
Oetjen J., Rexroth S., Reinhold-Hurek B. Mass spectrometric characterization of the covalent modification of the nitrogenase Fe-protein in Azoarcus sp. BH72. FEBS J. 2009, 276:3618-3627.
-
(2009)
FEBS J.
, vol.276
, pp. 3618-3627
-
-
Oetjen, J.1
Rexroth, S.2
Reinhold-Hurek, B.3
-
87
-
-
0028839177
-
Detection of arginine-ADP-ribosylated protein using recombinant ADP-ribosylarginine hydrolase
-
Ohno T., Tsuchiya M., Osago H., Hara N., Jidoi J., Shimoyama M. Detection of arginine-ADP-ribosylated protein using recombinant ADP-ribosylarginine hydrolase. Anal. Biochem. 1995, 231:115-122.
-
(1995)
Anal. Biochem.
, vol.231
, pp. 115-122
-
-
Ohno, T.1
Tsuchiya, M.2
Osago, H.3
Hara, N.4
Jidoi, J.5
Shimoyama, M.6
-
88
-
-
33644849513
-
Identification and characterization of a mammalian 39-kDa poly(ADP-ribose) glycohydrolase
-
Oka S., Kato J., Moss J. Identification and characterization of a mammalian 39-kDa poly(ADP-ribose) glycohydrolase. J. Biol. Chem. 2006, 281:705-713.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 705-713
-
-
Oka, S.1
Kato, J.2
Moss, J.3
-
89
-
-
0038583869
-
Spatial and temporal cellular responses to single-strand breaks in human cells
-
Okano S., Lan L., Caldecott K.W., Mori T., Yasui A. Spatial and temporal cellular responses to single-strand breaks in human cells. Mol. Cell. Biol. 2003, 23:3974-3981.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 3974-3981
-
-
Okano, S.1
Lan, L.2
Caldecott, K.W.3
Mori, T.4
Yasui, A.5
-
90
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127:635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
91
-
-
77951644400
-
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
-
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., et al. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci. Signal. 2010, 3:ra3.
-
(2010)
Sci. Signal.
, vol.3
, pp. ra3
-
-
Olsen, J.V.1
Vermeulen, M.2
Santamaria, A.3
Kumar, C.4
Miller, M.L.5
Jensen, L.J.6
Gnad, F.7
Cox, J.8
Jensen, T.S.9
Nigg, E.A.10
-
92
-
-
84868015370
-
Evaluation of candidate biomarkers to predict cancer cell sensitivity or resistance to PARP-1 inhibitor treatment
-
Oplustilova L., Wolanin K., Mistrik M., Korinkova G., Simkova D., Bouchal J., Lenobel R., Bartkova J., Lau A., O'Connor M.J., et al. Evaluation of candidate biomarkers to predict cancer cell sensitivity or resistance to PARP-1 inhibitor treatment. Cell Cycle 2012, 11:3837-3850.
-
(2012)
Cell Cycle
, vol.11
, pp. 3837-3850
-
-
Oplustilova, L.1
Wolanin, K.2
Mistrik, M.3
Korinkova, G.4
Simkova, D.5
Bouchal, J.6
Lenobel, R.7
Bartkova, J.8
Lau, A.9
O'Connor, M.J.10
-
93
-
-
0019819635
-
Diphtheria toxin. Site and configuration of ADP-ribosylation of diphthamide in elongation factor 2
-
Oppenheimer N.J., Bodley J.W. Diphtheria toxin. Site and configuration of ADP-ribosylation of diphthamide in elongation factor 2. J. Biol. Chem. 1981, 256:8579-8581.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 8579-8581
-
-
Oppenheimer, N.J.1
Bodley, J.W.2
-
94
-
-
84934964371
-
Processing of protein ADP-ribosylation by Nudix hydrolases
-
Palazzo L., Thomas B., Jemth A.S., Colby T., Leidecker O., Feijs K.L., Zaja R., Loseva O., Puigvert J.C., Matic I., et al. Processing of protein ADP-ribosylation by Nudix hydrolases. Biochem. J. 2015, 468:293-301.
-
(2015)
Biochem. J.
, vol.468
, pp. 293-301
-
-
Palazzo, L.1
Thomas, B.2
Jemth, A.S.3
Colby, T.4
Leidecker, O.5
Feijs, K.L.6
Zaja, R.7
Loseva, O.8
Puigvert, J.C.9
Matic, I.10
-
95
-
-
0026470170
-
Synthesis of poly(ADP-ribose)-agarose beads: an affinity resin for studying (ADP-ribose)n-protein interactions
-
Panzeter P.L., Zweifel B., Althaus F.R. Synthesis of poly(ADP-ribose)-agarose beads: an affinity resin for studying (ADP-ribose)n-protein interactions. Anal. Biochem. 1992, 207:157-162.
-
(1992)
Anal. Biochem.
, vol.207
, pp. 157-162
-
-
Panzeter, P.L.1
Zweifel, B.2
Althaus, F.R.3
-
96
-
-
0035978751
-
ADP-ribose gating of the calcium-permeable LTRPC2 channel revealed by Nudix motif homology
-
Perraud A.L., Fleig A., Dunn C.A., Bagley L.A., Launay P., Schmitz C., Stokes A.J., Zhu Q., Bessman M.J., Penner R., et al. ADP-ribose gating of the calcium-permeable LTRPC2 channel revealed by Nudix motif homology. Nature 2001, 411:595-599.
-
(2001)
Nature
, vol.411
, pp. 595-599
-
-
Perraud, A.L.1
Fleig, A.2
Dunn, C.A.3
Bagley, L.A.4
Launay, P.5
Schmitz, C.6
Stokes, A.J.7
Zhu, Q.8
Bessman, M.J.9
Penner, R.10
-
97
-
-
84863304598
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna
-
R: A language and environment for statistical computing 2011, R Development Core Team, R Foundation for Statistical Computing, Vienna.
-
(2011)
R: A language and environment for statistical computing
-
-
-
98
-
-
0026730009
-
Histone shuttling by poly(ADP-ribosylation)
-
Realini C.A., Althaus F.R. Histone shuttling by poly(ADP-ribosylation). J. Biol. Chem. 1992, 267:18858-18865.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 18858-18865
-
-
Realini, C.A.1
Althaus, F.R.2
-
99
-
-
0036407637
-
Functional characterization of the poly(ADP-ribose) polymerase activity of tankyrase 1, a potential regulator of telomere length
-
Rippmann J.F., Damm K., Schnapp A. Functional characterization of the poly(ADP-ribose) polymerase activity of tankyrase 1, a potential regulator of telomere length. J. Mol. Biol. 2002, 323:217-224.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 217-224
-
-
Rippmann, J.F.1
Damm, K.2
Schnapp, A.3
-
100
-
-
80054717097
-
Identification of distinct amino acids as ADP-ribose acceptor sites by mass spectrometry
-
Rosenthal F., Messner S., Roschitzki B., Gehrig P., Nanni P., Hottiger M.O. Identification of distinct amino acids as ADP-ribose acceptor sites by mass spectrometry. Methods Mol. Biol. 2011, 780:57-66.
-
(2011)
Methods Mol. Biol.
, vol.780
, pp. 57-66
-
-
Rosenthal, F.1
Messner, S.2
Roschitzki, B.3
Gehrig, P.4
Nanni, P.5
Hottiger, M.O.6
-
101
-
-
84876167387
-
Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases
-
Rosenthal F., Feijs K.L., Frugier E., Bonalli M., Forst A.H., Imhof R., Winkler H.C., Fischer D., Caflisch A., Hassa P.O., et al. Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases. Nat. Struct. Mol. Biol. 2013, 20:502-507.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 502-507
-
-
Rosenthal, F.1
Feijs, K.L.2
Frugier, E.3
Bonalli, M.4
Forst, A.H.5
Imhof, R.6
Winkler, H.C.7
Fischer, D.8
Caflisch, A.9
Hassa, P.O.10
-
102
-
-
84877634923
-
Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease
-
Sharifi R., Morra R., Appel C.D., Tallis M., Chioza B., Jankevicius G., Simpson M.A., Matic I., Ozkan E., Golia B., et al. Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease. EMBO J. 2013, 32:1225-1237.
-
(2013)
EMBO J.
, vol.32
, pp. 1225-1237
-
-
Sharifi, R.1
Morra, R.2
Appel, C.D.3
Tallis, M.4
Chioza, B.5
Jankevicius, G.6
Simpson, M.A.7
Matic, I.8
Ozkan, E.9
Golia, B.10
-
103
-
-
80053375417
-
The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase
-
Slade D., Dunstan M.S., Barkauskaite E., Weston R., Lafite P., Dixon N., Ahel M., Leys D., Ahel I. The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase. Nature 2011, 477:616-620.
-
(2011)
Nature
, vol.477
, pp. 616-620
-
-
Slade, D.1
Dunstan, M.S.2
Barkauskaite, E.3
Weston, R.4
Lafite, P.5
Dixon, N.6
Ahel, M.7
Leys, D.8
Ahel, I.9
-
104
-
-
0016792818
-
Chemical and metabolic properties of adenosine diphosphate ribose derivatives of nuclear proteins
-
Smith J.A., Stocken L.A. Chemical and metabolic properties of adenosine diphosphate ribose derivatives of nuclear proteins. Biochem. J. 1975, 147:523-529.
-
(1975)
Biochem. J.
, vol.147
, pp. 523-529
-
-
Smith, J.A.1
Stocken, L.A.2
-
105
-
-
84874625369
-
Proteoform: a single term describing protein complexity
-
Consortium for Top Down Proteomics
-
Smith L.M., Kelleher N.L. Proteoform: a single term describing protein complexity. Nat. Methods 2013, 10:186-187. Consortium for Top Down Proteomics.
-
(2013)
Nat. Methods
, vol.10
, pp. 186-187
-
-
Smith, L.M.1
Kelleher, N.L.2
-
106
-
-
84892384683
-
Structural implications for selective targeting of parps
-
Steffen J.D., Brody J.R., Armen R.S., Pascal J.M. Structural implications for selective targeting of parps. Front Oncol 2013, 3:301.
-
(2013)
Front Oncol
, vol.3
, pp. 301
-
-
Steffen, J.D.1
Brody, J.R.2
Armen, R.S.3
Pascal, J.M.4
-
107
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of gene ontology terms
-
Supek F., Bošnjak M., Škunca N., Šmuc T. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS ONE 2011, 6:e21800.
-
(2011)
PLoS ONE
, vol.6
, pp. e21800
-
-
Supek, F.1
Bošnjak, M.2
Škunca, N.3
Šmuc, T.4
-
108
-
-
67650725201
-
Protein phosphorylation by semisynthesis: from paper to practice
-
Szewczuk L.M., Tarrant M.K., Cole P.A. Protein phosphorylation by semisynthesis: from paper to practice. Methods Enzymol. 2009, 462:1-24.
-
(2009)
Methods Enzymol.
, vol.462
, pp. 1-24
-
-
Szewczuk, L.M.1
Tarrant, M.K.2
Cole, P.A.3
-
109
-
-
84864408302
-
Large-scale preparation and characterization of poly(ADP-ribose) and defined length polymers
-
Tan E.S., Krukenberg K.A., Mitchison T.J. Large-scale preparation and characterization of poly(ADP-ribose) and defined length polymers. Anal. Biochem. 2012, 428:126-136.
-
(2012)
Anal. Biochem.
, vol.428
, pp. 126-136
-
-
Tan, E.S.1
Krukenberg, K.A.2
Mitchison, T.J.3
-
110
-
-
70349935191
-
Identification of the ADP-ribosylation sites in the PARP-1 automodification domain: analysis and implications
-
Tao Z., Gao P., Liu H.W. Identification of the ADP-ribosylation sites in the PARP-1 automodification domain: analysis and implications. J. Am. Chem. Soc. 2009, 131:14258-14260.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 14258-14260
-
-
Tao, Z.1
Gao, P.2
Liu, H.W.3
-
111
-
-
69949133036
-
A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation
-
Timinszky G., Till S., Hassa P.O., Hothorn M., Kustatscher G., Nijmeijer B., Colombelli J., Altmeyer M., Stelzer E.H., Scheffzek K., et al. A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation. Nat. Struct. Mol. Biol. 2009, 16:923-929.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 923-929
-
-
Timinszky, G.1
Till, S.2
Hassa, P.O.3
Hothorn, M.4
Kustatscher, G.5
Nijmeijer, B.6
Colombelli, J.7
Altmeyer, M.8
Stelzer, E.H.9
Scheffzek, K.10
-
112
-
-
83055176451
-
Mapping intact protein isoforms in discovery mode using top-down proteomics
-
Tran J.C., Zamdborg L., Ahlf D.R., Lee J.E., Catherman A.D., Durbin K.R., Tipton J.D., Vellaichamy A., Kellie J.F., Li M., et al. Mapping intact protein isoforms in discovery mode using top-down proteomics. Nature 2011, 480:254-258.
-
(2011)
Nature
, vol.480
, pp. 254-258
-
-
Tran, J.C.1
Zamdborg, L.2
Ahlf, D.R.3
Lee, J.E.4
Catherman, A.D.5
Durbin, K.R.6
Tipton, J.D.7
Vellaichamy, A.8
Kellie, J.F.9
Li, M.10
-
113
-
-
80052961045
-
Identification of candidate substrates for poly(ADP-ribose) polymerase-2 (PARP2) in the absence of DNA damage using high-density protein microarrays
-
Troiani S., Lupi R., Perego R., Depaolini S.R., Thieffine S., Bosotti R., Rusconi L. Identification of candidate substrates for poly(ADP-ribose) polymerase-2 (PARP2) in the absence of DNA damage using high-density protein microarrays. FEBS J. 2011, 278:3676-3687.
-
(2011)
FEBS J.
, vol.278
, pp. 3676-3687
-
-
Troiani, S.1
Lupi, R.2
Perego, R.3
Depaolini, S.R.4
Thieffine, S.5
Bosotti, R.6
Rusconi, L.7
-
114
-
-
77950843539
-
Synthesis of mono-ADP-ribosylated oligopeptides using ribosylated amino acid building blocks
-
van der Heden van Noort G.J., van der Horst M.G., Overkleeft H.S., van der Marel G.A., Filippov D.V. Synthesis of mono-ADP-ribosylated oligopeptides using ribosylated amino acid building blocks. J. Am. Chem. Soc. 2010, 132:5236-5240.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 5236-5240
-
-
van der Heden van Noort, G.J.1
van der Horst, M.G.2
Overkleeft, H.S.3
van der Marel, G.A.4
Filippov, D.V.5
-
115
-
-
84921416774
-
Proteomics approaches to identify mono-(ADP-ribosyl)ated and poly(ADP-ribosyl)ated proteins
-
Vivelo C.A., Leung A.K. Proteomics approaches to identify mono-(ADP-ribosyl)ated and poly(ADP-ribosyl)ated proteins. Proteomics 2015, 15:203-217.
-
(2015)
Proteomics
, vol.15
, pp. 203-217
-
-
Vivelo, C.A.1
Leung, A.K.2
-
116
-
-
84882437564
-
A systematic analysis of the PARP protein family identifies new functions critical for cell physiology
-
Vyas S., Chesarone-Cataldo M., Todorova T., Huang Y.H., Chang P. A systematic analysis of the PARP protein family identifies new functions critical for cell physiology. Nat. Commun. 2013, 4:2240.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2240
-
-
Vyas, S.1
Chesarone-Cataldo, M.2
Todorova, T.3
Huang, Y.H.4
Chang, P.5
-
117
-
-
84904697375
-
Family-wide analysis of poly(ADP-ribose) polymerase activity
-
Vyas S., Matic I., Uchima L., Rood J., Zaja R., Hay R.T., Ahel I., Chang P. Family-wide analysis of poly(ADP-ribose) polymerase activity. Nat. Commun. 2014, 5:4426.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4426
-
-
Vyas, S.1
Matic, I.2
Uchima, L.3
Rood, J.4
Zaja, R.5
Hay, R.T.6
Ahel, I.7
Chang, P.8
-
118
-
-
84857939963
-
Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors
-
Wahlberg E., Karlberg T., Kouznetsova E., Markova N., Macchiarulo A., Thorsell A.G., Pol E., Frostell Å., Ekblad T., Öncü D., et al. Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors. Nat. Biotechnol. 2012, 30:283-288.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 283-288
-
-
Wahlberg, E.1
Karlberg, T.2
Kouznetsova, E.3
Markova, N.4
Macchiarulo, A.5
Thorsell, A.G.6
Pol, E.7
Frostell, Å.8
Ekblad, T.9
Öncü, D.10
-
119
-
-
84863010981
-
Recognition of the iso-ADP-ribose moiety in poly(ADP-ribose) by WWE domains suggests a general mechanism for poly(ADP-ribosyl)ation-dependent ubiquitination
-
Wang Z., Michaud G.A., Cheng Z., Zhang Y., Hinds T.R., Fan E., Cong F., Xu W. Recognition of the iso-ADP-ribose moiety in poly(ADP-ribose) by WWE domains suggests a general mechanism for poly(ADP-ribosyl)ation-dependent ubiquitination. Genes Dev. 2012, 26:235-240.
-
(2012)
Genes Dev.
, vol.26
, pp. 235-240
-
-
Wang, Z.1
Michaud, G.A.2
Cheng, Z.3
Zhang, Y.4
Hinds, T.R.5
Fan, E.6
Cong, F.7
Xu, W.8
-
120
-
-
0020479802
-
DNA fragmentation and NAD depletion. Their relation to the turnover of endogenous mono(ADP-ribosyl) and poly(ADP-ribosyl) proteins
-
Wielckens K., Schmidt A., George E., Bredehorst R., Hilz H. DNA fragmentation and NAD depletion. Their relation to the turnover of endogenous mono(ADP-ribosyl) and poly(ADP-ribosyl) proteins. J. Biol. Chem. 1982, 257:12872-12877.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 12872-12877
-
-
Wielckens, K.1
Schmidt, A.2
George, E.3
Bredehorst, R.4
Hilz, H.5
-
121
-
-
84875991401
-
Dual coordination of post translational modifications in human protein networks
-
Woodsmith J., Kamburov A., Stelzl U. Dual coordination of post translational modifications in human protein networks. PLoS Comput. Biol. 2013, 9:e1002933.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1002933
-
-
Woodsmith, J.1
Kamburov, A.2
Stelzl, U.3
-
122
-
-
79960979428
-
A large-scale method to measure absolute protein phosphorylation stoichiometries
-
Wu R., Haas W., Dephoure N., Huttlin E.L., Zhai B., Sowa M.E., Gygi S.P. A large-scale method to measure absolute protein phosphorylation stoichiometries. Nat. Methods 2011, 8:677-683.
-
(2011)
Nat. Methods
, vol.8
, pp. 677-683
-
-
Wu, R.1
Haas, W.2
Dephoure, N.3
Huttlin, E.L.4
Zhai, B.5
Sowa, M.E.6
Gygi, S.P.7
-
123
-
-
33845317242
-
Apoptosis-inducing factor mediates poly(ADP-ribose) (PAR) polymer-induced cell death
-
Yu S.W., Andrabi S.A., Wang H., Kim N.S., Poirier G.G., Dawson T.M., Dawson V.L. Apoptosis-inducing factor mediates poly(ADP-ribose) (PAR) polymer-induced cell death. Proc. Natl. Acad. Sci. USA 2006, 103:18314-18319.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 18314-18319
-
-
Yu, S.W.1
Andrabi, S.A.2
Wang, H.3
Kim, N.S.4
Poirier, G.G.5
Dawson, T.M.6
Dawson, V.L.7
-
124
-
-
79955617241
-
RNF146 is a poly(ADP-ribose)-directed E3 ligase that regulates axin degradation and Wnt signalling
-
Zhang Y., Liu S., Mickanin C., Feng Y., Charlat O., Michaud G.A., Schirle M., Shi X., Hild M., Bauer A., et al. RNF146 is a poly(ADP-ribose)-directed E3 ligase that regulates axin degradation and Wnt signalling. Nat. Cell Biol. 2011, 13:623-629.
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 623-629
-
-
Zhang, Y.1
Liu, S.2
Mickanin, C.3
Feng, Y.4
Charlat, O.5
Michaud, G.A.6
Schirle, M.7
Shi, X.8
Hild, M.9
Bauer, A.10
-
125
-
-
84884906084
-
Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome
-
Zhang Y., Wang J., Ding M., Yu Y. Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome. Nat. Methods 2013, 10:981-984.
-
(2013)
Nat. Methods
, vol.10
, pp. 981-984
-
-
Zhang, Y.1
Wang, J.2
Ding, M.3
Yu, Y.4
-
126
-
-
84881179223
-
Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites
-
Zheng Y., Thomas P.M., Kelleher N.L. Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites. Nat. Commun. 2013, 4:2203.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2203
-
-
Zheng, Y.1
Thomas, P.M.2
Kelleher, N.L.3
|