-
1
-
-
46249109477
-
Ventastega curonica and the origin of tetrapod morphology
-
Ahlberg PE, Clack JA, Luksevics E, Blom H, Zupins I. 2008. Ventastega curonica and the origin of tetrapod morphology. Nature 453: 1199-1204.
-
(2008)
Nature
, vol.453
, pp. 1199-1204
-
-
Ahlberg, P.E.1
Clack, J.A.2
Luksevics, E.3
Blom, H.4
Zupins, I.5
-
2
-
-
9144240550
-
Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model
-
Aouacheria A, et al. 2004. Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model. J Biol Chem. 279:47711-47719.
-
(2004)
J Biol Chem.
, vol.279
, pp. 47711-47719
-
-
Aouacheria, A.1
-
3
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic G, Gough J, Teichmann SA. 2001. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol. 310: 311-325.
-
(2001)
J Mol Biol.
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
4
-
-
0242323637
-
Multi-domain protein families and domain pairs: Comparison with known structures and a
-
random model of domain recombination
-
Apic G, Huber W, Teichmann SA. 2003. Multi-domain protein families and domain pairs: Comparison with known structures and a random model of domain recombination. J Struct Funct Genomics. 4: 67-78.
-
(2003)
J Struct Funct Genomics.
, vol.4
, pp. 67-78
-
-
Apic, G.1
Huber, W.2
Teichmann, S.A.3
-
5
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
Ashburner M, et al. 2000. Gene ontology: Tool for the unification of biology. The gene ontology consortium. Nat Genet. 25:25-29.
-
(2000)
Nat Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
6
-
-
84891436889
-
Elastic fibres in health and disease
-
Baldwin AK, Simpson A, Steer R, Cain SA, Kielty CM. 2013. Elastic fibres in health and disease. Expert Rev Mol Med. 15:e8.
-
(2013)
Expert Rev Mol Med.
, vol.15
, pp. e8
-
-
Baldwin, A.K.1
Simpson, A.2
Steer, R.3
Cain, S.A.4
Kielty, C.M.5
-
7
-
-
0036307754
-
The geometry of domain combination in proteins
-
Bashton M, Chothia C. 2002. The geometry of domain combination in proteins. J Mol Biol. 315:927-939.
-
(2002)
J Mol Biol.
, vol.315
, pp. 927-939
-
-
Bashton, M.1
Chothia, C.2
-
9
-
-
65549111825
-
Domain mobility in proteins: Functional and evolutionary implications
-
Basu MK, Poliakov E, Rogozin IB. 2009. Domain mobility in proteins: Functional and evolutionary implications. Brief Bioinform. 10:205-216.
-
(2009)
Brief Bioinform.
, vol.10
, pp. 205-216
-
-
Basu, M.K.1
Poliakov, E.2
Rogozin, I.B.3
-
12
-
-
0033776145
-
ERBIN: A basolateral PDZ protein that interacts with the mammalian ERBB2/HER2 receptor
-
Borg JP, et al. 2000. ERBIN: A basolateral PDZ protein that interacts with the mammalian ERBB2/HER2 receptor. Nat Cell Biol. 2:407-414.
-
(2000)
Nat Cell Biol.
, vol.2
, pp. 407-414
-
-
Borg, J.P.1
-
14
-
-
84879172714
-
Dynamics and adaptive benefits of modular protein evolution
-
Bornberg-Bauer E, Alba MM. 2013. Dynamics and adaptive benefits of modular protein evolution. Curr Opin Struct Biol. 23:459-466.
-
(2013)
Curr Opin Struct Biol.
, vol.23
, pp. 459-466
-
-
Bornberg-Bauer, E.1
Alba, M.M.2
-
16
-
-
84155175837
-
Quantifying the mechanisms of domain gain in animal proteins
-
Buljan M, Frankish A, Bateman A. 2010. Quantifying the mechanisms of domain gain in animal proteins. Genome Biol. 11:R74.
-
(2010)
Genome Biol.
, vol.11
, pp. R74
-
-
Buljan, M.1
Frankish, A.2
Bateman, A.3
-
17
-
-
78651301312
-
Matrix DB, the extracellular matrix interaction database
-
Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S. 2011. MatrixDB, the extracellular matrix interaction database. Nucleic Acids Res. 39:D235-D240.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D235-D240
-
-
Chautard, E.1
Fatoux-Ardore, M.2
Ballut, L.3
Thierry-Mieg, N.4
Ricard-Blum, S.5
-
18
-
-
37849023306
-
Assessing performance of orthology detection strategies applied to eukaryotic genomes
-
Chen F, Mackey AJ, Vermunt JK, Roos DS. 2007. Assessing performance of orthology detection strategies applied to eukaryotic genomes. PLoS One 2:e383.
-
(2007)
PLoS One
, vol.2
, pp. e383
-
-
Chen, F.1
Mackey, A.J.2
Vermunt, J.K.3
Roos, D.S.4
-
19
-
-
33645218015
-
Silencing of the hydra serine protease inhibitor Kazal1 gene mimics the human SPINK1 pancreatic phenotype
-
Chera S, et al. 2006. Silencing of the hydra serine protease inhibitor Kazal1 gene mimics the human SPINK1 pancreatic phenotype. J Cell Sci. 119: 846-857.
-
(2006)
J Cell Sci.
, vol.119
, pp. 846-857
-
-
Chera, S.1
-
20
-
-
84860644876
-
Toward a systems level view of the ECMand related proteins: A framework for the systematic definition and analysis of biological systems
-
Cromar GL, Xiong X, Chautard E, Ricard-Blum S, Parkinson J. 2012. Toward a systems level view of the ECMand related proteins: A framework for the systematic definition and analysis of biological systems. Proteins 80:1522-1544.
-
(2012)
Proteins
, vol.80
, pp. 1522-1544
-
-
Cromar, G.L.1
Xiong, X.2
Chautard, E.3
Ricard-Blum, S.4
Parkinson, J.5
-
22
-
-
0037040286
-
Mapping the ligand-binding sites and disease-associatedmutations on themost abundant protein in the human, type i collagen
-
Di Lullo GA, Sweeney SM, Korkko J, Ala-Kokko L, San Antonio JD. 2002. Mapping the ligand-binding sites and disease-associatedmutations on themost abundant protein in the human, type I collagen. J Biol Chem. 277:4223-4231.
-
(2002)
J Biol Chem.
, vol.277
, pp. 4223-4231
-
-
Di Lullo, G.A.1
Sweeney, S.M.2
Korkko, J.3
Ala-Kokko, L.4
San Antonio, J.D.5
-
23
-
-
0036850090
-
Origin and early evolution of vertebrate skeletonization
-
Donoghue PC, Sansom IJ. 2002. Origin and early evolution of vertebrate skeletonization. Microsc Res Tech. 59:352-372.
-
(2002)
Microsc Res Tech.
, vol.59
, pp. 352-372
-
-
Donoghue, P.C.1
Sansom, I.J.2
-
24
-
-
33745588878
-
Early evolution of vertebrate skeletal tissues and cellular interactions, and the canalization of skeletal development
-
Donoghue PC, Sansom IJ, Downs JP. 2006. Early evolution of vertebrate skeletal tissues and cellular interactions, and the canalization of skeletal development. J Exp Zool B Mol Dev Evol. 306:278-294.
-
(2006)
J Exp Zool B Mol Dev Evol.
, vol.306
, pp. 278-294
-
-
Donoghue, P.C.1
Sansom, I.J.2
Downs, J.P.3
-
26
-
-
33645981936
-
A hybrid micro-macroevolutionary approach to gene tree reconstruction
-
Durand D, Halldorsson BV, Vernot B. 2006. A hybrid micro-macroevolutionary approach to gene tree reconstruction. J Comput Biol. 13: 320-335.
-
(2006)
J Comput Biol.
, vol.13
, pp. 320-335
-
-
Durand, D.1
Halldorsson, B.V.2
Vernot, B.3
-
27
-
-
80055082271
-
Accelerated Profile HMM Searches
-
Eddy SR. 2011. Accelerated Profile HMM Searches. PLoS Comput Biol. 7: E1002195.
-
(2011)
PLoS Comput Biol.
, vol.7
, pp. e1002195
-
-
Eddy, S.R.1
-
28
-
-
34548487255
-
Quantification of the elevated rate of domain rearrangements in metazoa
-
Ekman D, Bjorklund AK, Elofsson A. 2007. Quantification of the elevated rate of domain rearrangements in metazoa. J Mol Biol. 372: 1337-1348.
-
(2007)
J Mol Biol.
, vol.372
, pp. 1337-1348
-
-
Ekman, D.1
Bjorklund, A.K.2
Elofsson, A.3
-
29
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S, Ouzounis CA. 2002. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30: 1575-1584.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
30
-
-
21744445916
-
The integrins of the urochordate Ciona intestinalis provide novel insights into the molecular evolution of the vertebrate integrin family
-
Ewan R, et al. 2005. The integrins of the urochordate Ciona intestinalis provide novel insights into the molecular evolution of the vertebrate integrin family. BMC Evol Biol. 5:31.
-
(2005)
BMC Evol Biol.
, vol.5
, pp. 31
-
-
Ewan, R.1
-
32
-
-
0033546184
-
Complete cDNA cloning, genomic organization, chromosomal assignment, functional characterization of the promoter, and expression of the murine Bamacan gene
-
Ghiselli G, Siracusa LD, Iozzo RV. 1999. Complete cDNA cloning, genomic organization, chromosomal assignment, functional characterization of the promoter, and expression of the murine Bamacan gene. J Biol Chem. 274:17384-17393.
-
(1999)
J Biol Chem.
, vol.274
, pp. 17384-17393
-
-
Ghiselli, G.1
Siracusa, L.D.2
Iozzo, R.V.3
-
33
-
-
84871696023
-
Vascular development in the zebrafish
-
Gore AV, Monzo K, Cha YR, Pan W, Weinstein BM. 2012. Vascular development in the zebrafish. Cold Spring Harb Perspect Med. 2: A006684.
-
(2012)
Cold Spring Harb Perspect Med.
, vol.2
, pp. a006684
-
-
Gore, A.V.1
Monzo, K.2
Cha, Y.R.3
Pan, W.4
Weinstein, B.M.5
-
34
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han JD, et al. 2004. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430:88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
-
35
-
-
79952217649
-
The elastin fiber system between and adjacent to collector channels in the human juxtacanalicular tissue
-
Hann CR, Fautsch MP. 2011. The elastin fiber system between and adjacent to collector channels in the human juxtacanalicular tissue. Invest Ophthalmol Vis Sci. 52:45-50.
-
(2011)
Invest Ophthalmol Vis Sci.
, vol.52
, pp. 45-50
-
-
Hann, C.R.1
Fautsch, M.P.2
-
36
-
-
0036166823
-
Domain structure and organisation in extracellular matrix proteins
-
Hohenester E, Engel J. 2002. Domain structure and organisation in extracellular matrix proteins. Matrix Biol. 21:115-128.
-
(2002)
Matrix Biol.
, vol.21
, pp. 115-128
-
-
Hohenester, E.1
Engel, J.2
-
37
-
-
0026667717
-
Characterization of an associated microfibril protein through recombinant DNA techniques
-
Horrigan SK, Rich CB, Streeten BW, Li ZY, Foster JA. 1992. Characterization of an associated microfibril protein through recombinant DNA techniques. J Biol Chem. 267:10087-10095.
-
(1992)
J Biol Chem.
, vol.267
, pp. 10087-10095
-
-
Horrigan, S.K.1
Rich, C.B.2
Streeten, B.W.3
Li, Z.Y.4
Foster, J.A.5
-
38
-
-
18844379933
-
Integrin evolution: Insights from ascidian and teleost fish genomes
-
Huhtala M, Heino J, Casciari D, de Luise A, Johnson MS. 2005. Integrin evolution: Insights from ascidian and teleost fish genomes.Matrix Biol. 24:83-95.
-
(2005)
Matrix Biol.
, vol.24
, pp. 83-95
-
-
Huhtala, M.1
Heino, J.2
Casciari, D.3
De Luise, A.4
Johnson, M.S.5
-
39
-
-
58149203231
-
InterPro: The integrative protein signature database
-
Hunter S, et al. 2009. InterPro: The integrative protein signature database. Nucleic Acids Res. 37:D211-D215.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D211-D215
-
-
Hunter, S.1
-
40
-
-
21844444108
-
The characterisation of six ADAMTS proteases in the basal chordate Ciona intestinalis provides new insights into the vertebrate ADAMTS family
-
Huxley-Jones J, Apte SS, Robertson DL, Boot-Handford RP. 2005. The characterisation of six ADAMTS proteases in the basal chordate Ciona intestinalis provides new insights into the vertebrate ADAMTS family. Int J Biochem Cell Biol. 37:1838-1845.
-
(2005)
Int J Biochem Cell Biol.
, vol.37
, pp. 1838-1845
-
-
Huxley-Jones, J.1
Apte, S.S.2
Robertson, D.L.3
Boot-Handford, R.P.4
-
41
-
-
62749135959
-
Back to basics-how the evolution of the extracellular matrix underpinned vertebrate evolution
-
Huxley-Jones J, Pinney JW, Archer J, Robertson DL, Boot-Handford RP. 2009. Back to basics-how the evolution of the extracellular matrix underpinned vertebrate evolution. Int J Exp Pathol. 90:95-100.
-
(2009)
Int J Exp Pathol.
, vol.90
, pp. 95-100
-
-
Huxley-Jones, J.1
Pinney, J.W.2
Archer, J.3
Robertson, D.L.4
Boot-Handford, R.P.5
-
43
-
-
70849099495
-
The extracellular matrix: Not just pretty fibrils
-
Hynes RO. 2009. The extracellular matrix: not just pretty fibrils. Science 326:1216-1219.
-
(2009)
Science
, vol.326
, pp. 1216-1219
-
-
Hynes, R.O.1
-
44
-
-
84860293184
-
The evolution of metazoan extracellular matrix
-
Hynes RO. 2012. The evolution of metazoan extracellular matrix. J Cell Biol. 196:671-679.
-
(2012)
J Cell Biol.
, vol.196
, pp. 671-679
-
-
Hynes, R.O.1
-
45
-
-
84863975330
-
Overview of the matrisome-an inventory of extracellular matrix constituents and functions
-
Hynes RO, Naba A. 2012. Overview of the matrisome-an inventory of extracellular matrix constituents and functions. Cold Spring Harb Perspect Biol. 4:a004903.
-
(2012)
Cold Spring Harb Perspect Biol.
, vol.4
, pp. a004903
-
-
Hynes, R.O.1
Naba, A.2
-
46
-
-
0035016443
-
PrefixSpan: Mining Sequential Patterns Efficiently by Prefix-projected Pattern Growth. Data Engineering, 2001
-
Heidelberg, Germany.
-
Jian Pei JH, et al. 2001. PrefixSpan: Mining sequential patterns efficiently by prefix-projected pattern growth. data engineering, 2001. in Proceedings of the 17th International Conference; Los Alamitos (CA): IEEE. Heidelberg, Germany. p. 215-224.
-
(2001)
Proceedings of the 17th International Conference; Los Alamitos (CA): IEEE
, pp. 215-224
-
-
Jian Pei, J.H.1
-
47
-
-
33845875196
-
Relating three-dimensional structures to protein networks provides evolutionary insights
-
Kim PM, Lu LJ, Xia Y, Gerstein MB. 2006. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314:1938-1941.
-
(2006)
Science
, vol.314
, pp. 1938-1941
-
-
Kim, P.M.1
Lu, L.J.2
Xia, Y.3
Gerstein, M.B.4
-
48
-
-
39149110563
-
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
-
King N, et al. 2008. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451:783-788.
-
(2008)
Nature
, vol.451
, pp. 783-788
-
-
King, N.1
-
49
-
-
0034571148
-
Howmany genes can make a cell: Theminimal-gene-set concept
-
Koonin EV. 2000. Howmany genes can make a cell: Theminimal-gene-set concept. Annu Rev Genomics Hum Genet. 1:99-116.
-
(2000)
Annu Rev Genomics Hum Genet.
, vol.1
, pp. 99-116
-
-
Koonin, E.V.1
-
51
-
-
0035133863
-
Reduced hydrolysis of amelogenin may result in X-linked amelogenesis imperfect
-
Li W, Gibson CW, Abrams WR, Andrews DW, DenBesten PK. 2001. Reduced hydrolysis of amelogenin may result in X-linked amelogenesis imperfecta. Matrix Biol. 19:755-760.
-
(2001)
Matrix Biol.
, vol.19
, pp. 755-760
-
-
Li, W.1
Gibson, C.W.2
Abrams, W.R.3
Andrews, D.W.4
Den Besten, P.K.5
-
52
-
-
0030891826
-
The gene for microfibril-associated protein-1 (MFAP1) is located several megabases centromeric to FBN1 and is not mutated in Marfan syndrome
-
Liu W, Faraco J, Qian C, Francke U. 1997. The gene for microfibril-associated protein-1 (MFAP1) is located several megabases centromeric to FBN1 and is not mutated in Marfan syndrome. Hum Genet. 99: 578-584.
-
(1997)
Hum Genet.
, vol.99
, pp. 578-584
-
-
Liu, W.1
Faraco, J.2
Qian, C.3
Francke, U.4
-
54
-
-
70350629778
-
Characterization of the acute inflammatory response in the hybrid tambacu (Piaractus mesopotamicus male x Colossoma macropomum female) (Osteichthyes)
-
Martins ML, et al. 2009. Characterization of the acute inflammatory response in the hybrid tambacu (Piaractus mesopotamicus male x Colossoma macropomum female) (Osteichthyes). Braz J Biol. 69: 957-962.
-
(2009)
Braz J Biol.
, vol.69
, pp. 957-962
-
-
Martins, M.L.1
-
55
-
-
33646771386
-
Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation
-
McKenzie P, Chadalavada SC, Bohrer J, Adams JC. 2006. Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation. BMC Evol Biol. 6:33.
-
(2006)
BMC Evol Biol.
, vol.6
, pp. 33
-
-
McKenzie, P.1
Chadalavada, S.C.2
Bohrer, J.3
Adams, J.C.4
-
56
-
-
78649775562
-
Enrichment map: A network-based method for gene-set enrichment visualization and interpretation
-
Merico D, Isserlin R, Stueker O, Emili A, Bader GD. 2010. Enrichment map: A network-based method for gene-set enrichment visualization and interpretation. PLoS One 5:e13984.
-
(2010)
PLoS One
, vol.5
, pp. e13984
-
-
Merico, D.1
Isserlin, R.2
Stueker, O.3
Emili, A.4
Bader, G.D.5
-
57
-
-
79951809934
-
Patterns of fungal diversity and composition along a salinity gradient
-
Mohamed DJ, Martiny JB. 2011. Patterns of fungal diversity and composition along a salinity gradient. ISME J. 5:379-388.
-
(2011)
ISME J.
, vol.5
, pp. 379-388
-
-
Mohamed, D.J.1
Martiny, J.B.2
-
58
-
-
84855873427
-
The dynamics and evolutionary potential of domain loss and emergence
-
Moore AD, Bornberg-Bauer E. 2012. The dynamics and evolutionary potential of domain loss and emergence. Mol Biol Evol. 29:787-796.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 787-796
-
-
Moore, A.D.1
Bornberg-Bauer, E.2
-
59
-
-
84876281976
-
Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree
-
Moore AD, Grath S, Schuler A, Huylmans AK, Bornberg-Bauer E. 2013. Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree. Biochim Biophys Acta. 1834:898-907.
-
(2013)
Biochim Biophys Acta.
, vol.1834
, pp. 898-907
-
-
Moore, A.D.1
Grath, S.2
Schuler, A.3
Huylmans, A.K.4
Bornberg-Bauer, E.5
-
60
-
-
0031881705
-
Origin of Metazoa: Sponges as living fossils
-
Muller WE. 1998. Origin of Metazoa: Sponges as living fossils. Naturwissenschaften 85:11-25.
-
(1998)
Naturwissenschaften
, vol.85
, pp. 11-25
-
-
Muller, W.E.1
-
61
-
-
0037931728
-
Dual functional roles of dentin matrix protein 1. Implications in biomineralization and gene transcription by activation of intracellular Ca2+ store
-
Narayanan K, et al. 2003. Dual functional roles of dentin matrix protein 1. Implications in biomineralization and gene transcription by activation of intracellular Ca2+ store. J Biol Chem. 278:17500-17508.
-
(2003)
J Biol Chem.
, vol.278
, pp. 17500-17508
-
-
Narayanan, K.1
-
62
-
-
0034844371
-
Insect silk contains both a Kunitz-type and a unique Kazal-type proteinase inhibitor
-
Nirmala X, Kodrik D, ZurovecM, Sehnal F. 2001. Insect silk contains both a Kunitz-type and a unique Kazal-type proteinase inhibitor. Eur J Biochem. 268:2064-2073.
-
(2001)
Eur J Biochem.
, vol.268
, pp. 2064-2073
-
-
Nirmala, X.1
Kodrik, D.2
Zurovec, M.3
Sehnal, F.4
-
64
-
-
84861749409
-
Quantitative proteomic analysis of eight cartilaginous tissues reveals characteristic differences as well as similarities between subgroups
-
Onnerfjord P, Khabut A, Reinholt FP, Svensson O, Heinegard D. 2012. Quantitative proteomic analysis of eight cartilaginous tissues reveals characteristic differences as well as similarities between subgroups. J Biol Chem. 287:18913-18924.
-
(2012)
J Biol Chem.
, vol.287
, pp. 18913-18924
-
-
Onnerfjord, P.1
Khabut, A.2
Reinholt, F.P.3
Svensson, O.4
Heinegard, D.5
-
65
-
-
78650463903
-
The evolution of extracellular matrix
-
Ozbek S, Balasubramanian PG, Chiquet-Ehrismann R, Tucker RP, Adams JC. 2010. The evolution of extracellular matrix. Mol Biol Cell. 21:4300-4305.
-
(2010)
Mol Biol Cell.
, vol.21
, pp. 4300-4305
-
-
Ozbek, S.1
Balasubramanian, P.G.2
Chiquet-Ehrismann, R.3
Tucker, R.P.4
Adams, J.C.5
-
66
-
-
77955121836
-
Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network
-
Patil A, Kinoshita K, Nakamura H. 2010a. Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network. Protein Sci. 19:1461-1468.
-
(2010)
Protein Sci.
, vol.19
, pp. 1461-1468
-
-
Patil, A.1
Kinoshita, K.2
Nakamura, H.3
-
67
-
-
77951898121
-
Hub promiscuity in proteinprotein interaction networks
-
Patil A, Kinoshita K, Nakamura H. 2010b. Hub promiscuity in proteinprotein interaction networks. Int J Mol Sci. 11:1930-1943.
-
(2010)
Int J Mol Sci.
, vol.11
, pp. 1930-1943
-
-
Patil, A.1
Kinoshita, K.2
Nakamura, H.3
-
68
-
-
84858077472
-
The Pfam protein families database
-
Punta M, et al. 2012. The Pfam protein families database. Nucleic Acids Res. 40:D290-D301.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D290-D301
-
-
Punta, M.1
-
69
-
-
0038678168
-
FGF23, PHEX, and MEPE regulation of phosphate homeostasis and skeletal mineralization
-
Quarles LD. 2003. FGF23, PHEX, and MEPE regulation of phosphate homeostasis and skeletal mineralization. Am J Physiol Endocrinol Metab. 285:E1-E9.
-
(2003)
Am J Physiol Endocrinol Metab.
, vol.285
, pp. E1-E9
-
-
Quarles, L.D.1
-
71
-
-
79952239719
-
Systematic Two-hybrid and Comparative Proteomic Analyses Reveal Novel Yeast Pre-mRNA Splicing Factors Connected to Prp19
-
Ren L, et al. 2011. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. PLoS One 6:e16719.
-
(2011)
PLoS One
, vol.6
, pp. e16719
-
-
Ren, L.1
-
72
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, et al. 2003. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13: 2498-2504.
-
(2003)
Genome Res.
, Issue.13
, pp. 2498-2504
-
-
Shannon, P.1
-
73
-
-
0032549628
-
Complex formation of SMAP/KAP3, a KIF3A/B ATPase motor-associated protein, with a human chromosome-associated polypeptide
-
Shimizu K, Shirataki H, Honda T, Minami S, Takai Y. 1998. Complex formation of SMAP/KAP3, a KIF3A/B ATPase motor-associated protein, with a human chromosome-associated polypeptide. J Biol Chem. 273: 6591-6594.
-
(1998)
J Biol Chem.
, vol.273
, pp. 6591-6594
-
-
Shimizu, K.1
Shirataki, H.2
Honda, T.3
Minami, S.4
Takai, Y.5
-
74
-
-
0037160538
-
Identification and characterization of ameloblastin gene in a reptile
-
Shintani S, et al. 2002. Identification and characterization of ameloblastin gene in a reptile. Gene 283:245-254.
-
(2002)
Gene
, vol.283
, pp. 245-254
-
-
Shintani, S.1
-
75
-
-
84880065533
-
Insights into neural crest development and evolution from genomic analysis
-
Simoes-Costa M, Bronner ME. 2013. Insights into neural crest development and evolution from genomic analysis. Genome Res. 23: 1069-1080.
-
(2013)
Genome Res.
, vol.23
, pp. 1069-1080
-
-
Simoes-Costa, M.1
Bronner, M.E.2
-
76
-
-
84866458802
-
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
-
Stolzer M, et al. 2012. Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. Bioinformatics 28: I409-i415.
-
(2012)
Bioinformatics
, vol.28
, pp. i409-i415
-
-
Stolzer, M.1
-
77
-
-
34347388470
-
UniRef: Comprehensive and non-redundant UniProt reference clusters
-
Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH. 2007. UniRef: Comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23:1282-1288.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282-1288
-
-
Suzek, B.E.1
Huang, H.2
McGarvey, P.3
Mazumder, R.4
Wu, C.H.5
-
78
-
-
0031046646
-
Growth factors in the extracellular matrix
-
Taipale J, Keski-Oja J. 1997. Growth factors in the extracellular matrix. FASEB J. 11:9.
-
(1997)
FASEB J.
, vol.11
, pp. 9
-
-
Taipale, J.1
Keski-Oja, J.2
-
79
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
Todd AE, Orengo CA, Thornton JM. 2001. Evolution of function in protein superfamilies, from a structural perspective. J Mol Biol. 307: 1113-1143.
-
(2001)
J Mol Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
80
-
-
84873957913
-
Emergence of novel domains in proteins
-
Toll-Riera M, Alba MM. 2013. Emergence of novel domains in proteins. BMC Evol Biol. 13:47.
-
(2013)
BMC Evol Biol.
, vol.13
, pp. 47
-
-
Toll-Riera, M.1
Alba, M.M.2
-
81
-
-
84857132597
-
Spatial organization of the extracellular matrix regulates cell-cell junction positioning
-
Tseng Q, et al. 2012. Spatial organization of the extracellular matrix regulates cell-cell junction positioning. Proc Natl Acad Sci U S A. 109: 1506-1511.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 1506-1511
-
-
Tseng, Q.1
-
82
-
-
0034788664
-
Naturally occurring circular permutations in proteins
-
Uliel S, Fliess A, Unger R. 2001. Naturally occurring circular permutations in proteins. Protein Eng. 14:533-542.
-
(2001)
Protein Eng.
, vol.14
, pp. 533-542
-
-
Uliel, S.1
Fliess, A.2
Unger, R.3
-
83
-
-
80955179041
-
Functional analysis of a pancreatic secretory trypsin inhibitor-like protein in insects: Silencing effects resemble the human pancreatic autodigestion phenotype
-
van Hoef V, et al. 2011. Functional analysis of a pancreatic secretory trypsin inhibitor-like protein in insects: Silencing effects resemble the human pancreatic autodigestion phenotype. Insect Biochem Mol Biol. 41: 688-695.
-
(2011)
Insect Biochem Mol Biol.
, vol.41
, pp. 688-695
-
-
Van Hoef, V.1
-
84
-
-
0842268045
-
Supradomains: Evolutionary units larger than single protein domains
-
Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA. 2004. Supradomains: Evolutionary units larger than single protein domains. J Mol Biol. 336:809-823.
-
(2004)
J Mol Biol.
, vol.336
, pp. 809-823
-
-
Vogel, C.1
Berzuini, C.2
Bashton, M.3
Gough, J.4
Teichmann, S.A.5
-
85
-
-
12344261833
-
The relationship between domain duplication and recombination
-
Vogel C, Teichmann SA, Pereira-Leal J. 2005. The relationship between domain duplication and recombination. J Mol Biol. 346: 355-365.
-
(2005)
J Mol Biol.
, vol.346
, pp. 355-365
-
-
Vogel, C.1
Teichmann, S.A.2
Pereira-Leal, J.3
-
86
-
-
79952586104
-
PhyloPro: A web-based tool for the generation and visualization of phylogenetic profiles across Eukarya
-
Xiong X, et al. 2011. PhyloPro: A web-based tool for the generation and visualization of phylogenetic profiles across Eukarya. Bioinformatics 27:877-878.
-
(2011)
Bioinformatics
, vol.27
, pp. 877-878
-
-
Xiong, X.1
-
87
-
-
84870662087
-
This Deja vu feeling-analysis of multidomain protein evolution in eukaryotic genomes
-
Zmasek CM, Godzik A. 2012. This Deja vu feeling-analysis of multidomain protein evolution in eukaryotic genomes. PLoS Comput Biol. 8: E1002701.
-
(2012)
PLoS Comput Biol.
, vol.8
, pp. e1002701
-
-
Zmasek, C.M.1
Godzik, A.2
|