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Volumn 2, Issue 8, 2006, Pages 0959-0970

Expansion of protein domain repeats

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; EXPANSION; NUCLEIC ACIDS;

EID: 33748052051     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0020114     Document Type: Article
Times cited : (211)

References (30)
  • 1
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial, and eukaryotic proteomes
    • Apic G, Gough J, Teichmann SA (2001) Domain combinations in archaeal, eubacterial, and eukaryotic proteomes. J Mol Biol 310: 311-325.
    • (2001) J Mol Biol , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 2
    • 12344261833 scopus 로고    scopus 로고
    • The relationship between domain duplication and recombination
    • Vogel C, Teichmann SA, Pereira-Leal J (2005) The relationship between domain duplication and recombination. J Mol Biol 346: 355-365.
    • (2005) J Mol Biol , vol.346 , pp. 355-365
    • Vogel, C.1    Teichmann, S.A.2    Pereira-Leal, J.3
  • 4
    • 33646268799 scopus 로고    scopus 로고
    • Domain deletions and substitutions in the modular protein evolution
    • Weiner J III, Beaussart F, Bornberg-Bauer E (2006) Domain deletions and substitutions in the modular protein evolution. FEBS J 273: 2037-2047.
    • (2006) FEBS J , vol.273 , pp. 2037-2047
    • Weiner III, J.1    Beaussart, F.2    Bornberg-Bauer, E.3
  • 5
    • 0035783061 scopus 로고    scopus 로고
    • Protein repeats: Structures, functions, and evolution
    • Andrade M, Perez-Iratxeta C, Ponting C (2001) Protein repeats: Structures, functions, and evolution. J Struct Biol 134: 117-131.
    • (2001) J Struct Biol , vol.134 , pp. 117-131
    • Andrade, M.1    Perez-Iratxeta, C.2    Ponting, C.3
  • 6
    • 0344628648 scopus 로고    scopus 로고
    • TPR proteins: The versatile helix
    • D'Andrea L, Regan L (2003) TPR proteins: The versatile helix. Trends Biochem Sci 28: 655-662.
    • (2003) Trends Biochem Sci , vol.28 , pp. 655-662
    • D'Andrea, L.1    Regan, L.2
  • 7
    • 2342624119 scopus 로고    scopus 로고
    • High-affinity binders selected from designed ankyrin repeat protein libraries
    • Binz H, Amstutz P, Kohl A, Stumpp M, Briand C, et al. (2004) High-affinity binders selected from designed ankyrin repeat protein libraries. Nat Biotechnol 22: 575-582.
    • (2004) Nat Biotechnol , vol.22 , pp. 575-582
    • Binz, H.1    Amstutz, P.2    Kohl, A.3    Stumpp, M.4    Briand, C.5
  • 8
    • 16244423379 scopus 로고    scopus 로고
    • Multi-domain proteins in the three kingdoms of life - Orphan domains and other unassigned regions
    • Ekman D, Björklund ÅK, Frey-Skött J, Elofsson A (2005) Multi-domain proteins in the three kingdoms of life - Orphan domains and other unassigned regions. J Mol Biol 348: 231-243.
    • (2005) J Mol Biol , vol.348 , pp. 231-243
    • Ekman, D.1    Björklund, Å.K.2    Frey-Skött, J.3    Elofsson, A.4
  • 10
    • 0033946441 scopus 로고    scopus 로고
    • Structure, function and evolution of plant disease resistance genes
    • Ellis J, Dodds P, Pryor T (2000) Structure, function and evolution of plant disease resistance genes. Curr Opin Plant Biol 3: 278-284.
    • (2000) Curr Opin Plant Biol , vol.3 , pp. 278-284
    • Ellis, J.1    Dodds, P.2    Pryor, T.3
  • 11
    • 0032563245 scopus 로고    scopus 로고
    • Evolution of simple repeats in DNA and their relation to human disease
    • Djian P (1998) Evolution of simple repeats in DNA and their relation to human disease. Cell 94: 155-160.
    • (1998) Cell , vol.94 , pp. 155-160
    • Djian, P.1
  • 12
    • 0036899102 scopus 로고    scopus 로고
    • KRAB zinc finger proteins: An analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution
    • Looman C, Abrink M, Mark C, Hellman L (2002) KRAB zinc finger proteins: An analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution. Mol Biol Evol 19: 2118-2130.
    • (2002) Mol Biol Evol , vol.19 , pp. 2118-2130
    • Looman, C.1    Abrink, M.2    Mark, C.3    Hellman, L.4
  • 14
    • 0033577911 scopus 로고    scopus 로고
    • Molecular evolution of immunoglobulin and fibronectin domains in titin and related muscle proteins
    • Kenny P, Liston E, Higgins D (1999) Molecular evolution of immunoglobulin and fibronectin domains in titin and related muscle proteins. Gene 232: 11-23.
    • (1999) Gene , vol.232 , pp. 11-23
    • Kenny, P.1    Liston, E.2    Higgins, D.3
  • 15
    • 0018907996 scopus 로고
    • Repeated folding pattern in copper-zinc superoxide dismutase
    • McLachlan A (1980) Repeated folding pattern in copper-zinc superoxide dismutase. Nature 285: 267-268.
    • (1980) Nature , vol.285 , pp. 267-268
    • McLachlan, A.1
  • 16
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer E, Eddy S, Durbin R (1997) Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins: Struct Funct Genet 28: 405-420.
    • (1997) Proteins: Struct Funct Genet , vol.28 , pp. 405-420
    • Sonnhammer, E.1    Eddy, S.2    Durbin, R.3
  • 17
    • 0035283045 scopus 로고    scopus 로고
    • Were protein internal repeats formed by "bricolage"?
    • Lavorgna G, Patthy L, Boncinelli E (2001) Were protein internal repeats formed by "bricolage"? Trends Genet 17: 120-123.
    • (2001) Trends Genet , vol.17 , pp. 120-123
    • Lavorgna, G.1    Patthy, L.2    Boncinelli, E.3
  • 18
    • 33745686603 scopus 로고    scopus 로고
    • What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
    • Ekman D, Light S, Björklund AK, Elofsson A (2006) What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 7: R45.
    • (2006) Genome Biol , vol.7
    • Ekman, D.1    Light, S.2    Björklund, A.K.3    Elofsson, A.4
  • 19
    • 0033057517 scopus 로고    scopus 로고
    • Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer
    • Ponting C, Aravind L, Schultz J, Bork P, Koonin E (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 289: 729-745.
    • (1999) J Mol Biol , vol.289 , pp. 729-745
    • Ponting, C.1    Aravind, L.2    Schultz, J.3    Bork, P.4    Koonin, E.5
  • 20
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T, Waterman M (1981) Identification of common molecular subsequences. J Mol Biol 147: 195-197.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.2
  • 21
    • 7244229999 scopus 로고    scopus 로고
    • The tolerance of a modular protein to duplication and deletion of internal repeats
    • Tripp K, Barrick D (2004) The tolerance of a modular protein to duplication and deletion of internal repeats. J Mol Biol 344: 169-178.
    • (2004) J Mol Biol , vol.344 , pp. 169-178
    • Tripp, K.1    Barrick, D.2
  • 22
    • 13744252347 scopus 로고    scopus 로고
    • Significant expansion of exon-bordering protein domains during animal proteome evolution
    • Liu M, Walch H, Wu S, Grigoriev A (2005) Significant expansion of exon-bordering protein domains during animal proteome evolution. Nucleic Acids Res 33: 95-105.
    • (2005) Nucleic Acids Res , vol.33 , pp. 95-105
    • Liu, M.1    Walch, H.2    Wu, S.3    Grigoriev, A.4
  • 23
    • 0032885169 scopus 로고    scopus 로고
    • Genome evolution and the evolution of exon-shuffling - A review
    • Patthy L (1999) Genome evolution and the evolution of exon-shuffling - A review. Gene 238: 103-14.
    • (1999) Gene , vol.238 , pp. 103-114
    • Patthy, L.1
  • 24
    • 0033621536 scopus 로고    scopus 로고
    • Genome evolution. Gene fusion versus gene fission
    • Snel B, Bork P, Huynen M (2000) Genome evolution. Gene fusion versus gene fission. Trends Genet 16: 9-11.
    • (2000) Trends Genet , vol.16 , pp. 9-11
    • Snel, B.1    Bork, P.2    Huynen, M.3
  • 25
    • 13144259695 scopus 로고    scopus 로고
    • Relative rates of gene fusion and fission in multi-domain proteins
    • Kummerfeld SK, Teichmann SA (2005) Relative rates of gene fusion and fission in multi-domain proteins. Trends Genet 21: 25-30.
    • (2005) Trends Genet , vol.21 , pp. 25-30
    • Kummerfeld, S.K.1    Teichmann, S.A.2
  • 26
    • 28644437048 scopus 로고    scopus 로고
    • The importance of sequence diversity in the aggregation and evolution of proteins
    • Wright C, Teichmann S, Clarke J, Dobson C (2005) The importance of sequence diversity in the aggregation and evolution of proteins. Nature 438: 878-881.
    • (2005) Nature , vol.438 , pp. 878-881
    • Wright, C.1    Teichmann, S.2    Clarke, J.3    Dobson, C.4
  • 27
    • 0037452697 scopus 로고    scopus 로고
    • Designed to be stable: Crystal structure of a consensus ankyrin repeat protein
    • Kohl A, Binz H, Forrer P, Stumpp M, Pluckthun A, et al. (2003) Designed to be stable: Crystal structure of a consensus ankyrin repeat protein. Proc Natl Acad Sci USA 100: 1700-1705.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1700-1705
    • Kohl, A.1    Binz, H.2    Forrer, P.3    Stumpp, M.4    Pluckthun, A.5
  • 29
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: The European molecular biology open software suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 30
    • 0031829372 scopus 로고    scopus 로고
    • Removing near-neighbour redundancy from large protein sequence collections
    • Holm L, Sander C (1998) Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics 14: 423-429.
    • (1998) Bioinformatics , vol.14 , pp. 423-429
    • Holm, L.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.