메뉴 건너뛰기




Volumn 19, Issue 8, 2010, Pages 1461-1468

Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network

Author keywords

Domain enrichment; Hubs; Interaction networks; Intrinsic disorder; Protein protein interactions

Indexed keywords

GUANOSINE TRIPHOSPHATE; PFAM PROTEIN; PROTEIN; PROTEIN A; PROTEIN C; PROTEIN KINASE; PROTEIN SERINE THREONINE KINASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RNA POLYMERASE; UBIQUITIN PROTEIN LIGASE; UNCLASSIFIED DRUG; UNSPECIFIC MONOOXYGENASE;

EID: 77955121836     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.425     Document Type: Article
Times cited : (54)

References (36)
  • 1
    • 70350482286 scopus 로고    scopus 로고
    • Evolution of biomolecular networks - Lessons from metabolic and protein interactions
    • Yamada T, Bork P (2009) Evolution of biomolecular networks - lessons from metabolic and protein interactions. Nat Rev Mol Cell Biol 10:791-803.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 791-803
    • Yamada, T.1    Bork, P.2
  • 4
    • 33746631391 scopus 로고    scopus 로고
    • Evolutionary and physiological importance of hub proteins
    • doi: 10.1371/journal.pcbi.0020088
    • Batada NN, Hurst LD, Tyers M (2006) Evolutionary and physiological importance of hub proteins. PLoS Comput Biol 2:e88. doi: 10.1371/journal.pcbi. 0020088.
    • (2006) PLoS Comput Biol , vol.2
    • Batada, N.N.1    Hurst, L.D.2    Tyers, M.3
  • 5
    • 33845875196 scopus 로고    scopus 로고
    • Relating three-dimensional structures to protein networks provides evolutionary insights
    • DOI 10.1126/science.1136174
    • Kim PM, Lu LJ, Xia Y, Gerstein MB (2006) Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314:1938-1941. (Pubitemid 46026118)
    • (2006) Science , vol.314 , Issue.5807 , pp. 1938-1941
    • Kim, P.M.1    Lu, L.J.2    Xia, Y.3    Gerstein, M.B.4
  • 7
    • 33745686603 scopus 로고    scopus 로고
    • What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
    • doi: 10.1186/gb-2006-7-6-r45
    • Ekman D, Light S, Bjorklund A, Elofsson A (2006) What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 7:R45. doi: 10.1186/gb-2006-7-6-r45.
    • (2006) Genome Biol , vol.7
    • Ekman, D.1    Light, S.2    Bjorklund, A.3    Elofsson, A.4
  • 9
    • 33645214608 scopus 로고    scopus 로고
    • Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
    • Patil A, Nakamura H (2006) Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks. FEBS Lett 580:2041-2045.
    • (2006) FEBS Lett , vol.580 , pp. 2041-2045
    • Patil, A.1    Nakamura, H.2
  • 10
    • 34547125807 scopus 로고    scopus 로고
    • The role of charged surface residues in the binding ability of small hubs in protein-protein interaction networks
    • DOI 10.2142/biophysics.3.27
    • Patil A, Nakamura H (2007) The role of charged surface residues in the binding ability of small hubs in protein-protein interaction networks. Biophysics 3:27-35. (Pubitemid 47104969)
    • (2007) Biophysics , vol.3 , pp. 27-35
    • Patil, A.1    Nakamura, H.2
  • 11
    • 59849106371 scopus 로고    scopus 로고
    • Protein promiscuity and its implications for biotechnology
    • Nobeli I, Favia AD, Thornton JM (2009) Protein promiscuity and its implications for biotechnology. Nat Biotechnol 27:157-167.
    • (2009) Nat Biotechnol , vol.27 , pp. 157-167
    • Nobeli, I.1    Favia, A.D.2    Thornton, J.M.3
  • 12
    • 70449769325 scopus 로고    scopus 로고
    • Protein-protein interaction networks: How can a hub protein bind so many different partners?
    • Tsai CJ, Ma B, Nussinov R (2009) Protein-protein interaction networks: how can a hub protein bind so many different partners? Trends Biochem Sci 34:594-600.
    • (2009) Trends Biochem Sci , vol.34 , pp. 594-600
    • Tsai, C.J.1    Ma, B.2    Nussinov, R.3
  • 14
    • 67650497792 scopus 로고    scopus 로고
    • Nature of the protein universe
    • Levitt M (2009) Nature of the protein universe. Proc Natl Acad Sci USA 106:11079-11084.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 11079-11084
    • Levitt, M.1
  • 15
    • 34548383489 scopus 로고    scopus 로고
    • Design of multispecificity in protein interfaces
    • doi: 10.1371/journal.pcbi.0030164
    • Humphris EL, Kortemme T (2007) Design of multispecificity in protein interfaces. PLoS Comput Biol 3: e164. doi: 10.1371/journal.pcbi.0030164.
    • (2007) PLoS Comput Biol , vol.3
    • Humphris, E.L.1    Kortemme, T.2
  • 18
  • 19
    • 43149092276 scopus 로고    scopus 로고
    • Principles of protein-protein interactions: What are the preferred ways for proteins to interact?
    • Keskin O, Gursoy A, Ma B, Nussinov R (2008) Principles of protein-protein interactions: what are the preferred ways for proteins to interact? Chem Rev 108: 1225-1244.
    • (2008) Chem Rev , vol.108 , pp. 1225-1244
    • Keskin, O.1    Gursoy, A.2    Ma, B.3    Nussinov, R.4
  • 20
    • 41149119083 scopus 로고    scopus 로고
    • The role of disorder in interaction networks: A structural analysis
    • doi: 10.1038/msb.2008.16
    • Kim PM, Sboner A, Xia Y, Gerstein M (2008) The role of disorder in interaction networks: a structural analysis. Mol Syst Biol 4:179. doi: 10.1038/msb.2008.16.
    • (2008) Mol Syst Biol , vol.4 , pp. 179
    • Kim, P.M.1    Sboner, A.2    Xia, Y.3    Gerstein, M.4
  • 21
    • 0032836911 scopus 로고    scopus 로고
    • Human replication protein A: Global fold of the N-terminal RPA-70 domain reveals a basic cleft and flexible C-terminal linker
    • Jacobs DM, Lipton AS, Isern NG, Daughdrill GW, Lowry DF, Gomes X, Wold MS (1999) Human replication protein A: global fold of the N-terminal RPA-70 domain reveals a basic cleft and flexible C-terminal linker. J Biomol NMR 14:321-331.
    • (1999) J Biomol NMR , vol.14 , pp. 321-331
    • Jacobs, D.M.1    Lipton, A.S.2    Isern, N.G.3    Daughdrill, G.W.4    Lowry, D.F.5    Gomes, X.6    Wold, M.S.7
  • 23
    • 34547743903 scopus 로고    scopus 로고
    • Reuse of structural domain-domain interactions in protein networks
    • doi: 10.1186/1471-2105-8-259
    • Schuster-Bockler B, Bateman A (2007) Reuse of structural domain-domain interactions in protein networks. BMC Bioinformatics 8:259. doi: 10.1186/1471-2105-8-259.
    • (2007) BMC Bioinformatics , vol.8 , pp. 259
    • Schuster-Bockler, B.1    Bateman, A.2
  • 24
    • 33847768609 scopus 로고    scopus 로고
    • Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
    • Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Uversky VN, Obradovic Z (2007) Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J Proteome Res 6:1882-1898.
    • (2007) J Proteome Res , vol.6 , pp. 1882-1898
    • Xie, H.1    Vucetic, S.2    Iakoucheva, L.M.3    Oldfield, C.J.4    Dunker, A.K.5    Uversky, V.N.6    Obradovic, Z.7
  • 25
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5:101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 26
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
    • doi: 10.1371/journal.pcbi.0030059
    • Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M (2007) The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3:e59. doi: 10.1371/journal.pcbi.0030059.
    • (2007) PLoS Comput Biol , vol.3
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 30
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader GD, Hogue CW (2002) Analyzing yeast protein-protein interaction data obtained from different sources. Nat Biotechnol 20:991-997.
    • (2002) Nat Biotechnol , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.2
  • 31
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P (2002) Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417:399-403. (Pubitemid 34563526)
    • (2002) Nature , vol.417 , Issue.6887 , pp. 399-403
    • Von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5    Fields, S.6    Bork, P.7
  • 32
    • 24044434446 scopus 로고    scopus 로고
    • Filtering high-throughput protein-protein interaction data using a combination of genomic features
    • doi: 10.1186/1471-2105-6-100
    • Patil A, Nakamura H (2005) Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 6:100. doi: 10.1186/1471-2105-6-100.
    • (2005) BMC Bioinformatics , vol.6 , pp. 100
    • Patil, A.1    Nakamura, H.2
  • 33
    • 25444433570 scopus 로고    scopus 로고
    • HINT: A database of annotated protein-protein interactions and their homologs
    • Patil A, Nakamura H (2005) HINT: a database of annotated protein-protein interactions and their homologs. Biophysics 1:21-24.
    • (2005) Biophysics , vol.1 , pp. 21-24
    • Patil, A.1    Nakamura, H.2
  • 34
    • 44349192171 scopus 로고    scopus 로고
    • Prediction of disordered regions in proteins based on the meta approach
    • DOI 10.1093/bioinformatics/btn195
    • Ishida T, Kinoshita K (2008) Prediction of disordered regions in proteins based on the meta approach. Bioinformatics 24:1344-1348. (Pubitemid 351737139)
    • (2008) Bioinformatics , vol.24 , Issue.11 , pp. 1344-1348
    • Ishida, T.1    Kinoshita, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.