메뉴 건너뛰기




Volumn 6, Issue 10, 2014, Pages 2654-2664

Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia Endosymbionts

Author keywords

endosymbiosis; gene loss; genomic reduction; molecular evolution; nonorthologous gene displacement.; selection relaxation

Indexed keywords

BACTERIAL GENOME; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; PHYSIOLOGY; SYMBIOSIS; WOLBACHIA;

EID: 84934954896     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu207     Document Type: Article
Times cited : (10)

References (99)
  • 1
    • 0036842986 scopus 로고    scopus 로고
    • Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia
    • Akman L, et al. 2002. Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nat Genet. 32: 402-407.
    • (2002) Nat Genet , vol.32 , pp. 402-407
    • Akman, L.1
  • 3
    • 67650522869 scopus 로고    scopus 로고
    • Dual nuclease and helicase activities of Helicobacter pylori AddAB are required for DNA repair, recombination, and mouse infectivity
    • Amundsen SK, Fero J, Salama NR, Smith GR. 2009. Dual nuclease and helicase activities of Helicobacter pylori AddAB are required for DNA repair, recombination, and mouse infectivity. J Biol Chem. 284: 16759-16766.
    • (2009) J Biol Chem , vol.284 , pp. 16759-16766
    • Amundsen, S.K.1    Fero, J.2    Salama, N.R.3    Smith, G.R.4
  • 4
    • 0032840799 scopus 로고    scopus 로고
    • Genome degradation is an ongoing process in Rickettsia
    • Andersson JO, Andersson SG. 1999. Genome degradation is an ongoing process in Rickettsia. Mol Biol Evol. 16:1178-1191.
    • (1999) Mol Biol Evol , vol.16 , pp. 1178-1191
    • Andersson, J.O.1    Andersson, S.G.2
  • 5
    • 0035029472 scopus 로고    scopus 로고
    • Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes
    • Andersson JO, Andersson SG. 2001. Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes. Mol Biol Evol. 18:829-839.
    • (2001) Mol Biol Evol , vol.18 , pp. 829-839
    • Andersson, J.O.1    Andersson, S.G.2
  • 6
    • 0034664813 scopus 로고    scopus 로고
    • SURVEY and SUMMARY: Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories
    • Aravind L, Makarova KS, Koonin EV. 2000. SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories. Nucleic Acids Res. 28:3417-3432.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3417-3432
    • Aravind, L.1    Makarova, K.S.2    Koonin, E.V.3
  • 8
    • 0346374827 scopus 로고    scopus 로고
    • Bacillus subtilis RecU protein cleaves Holliday junctions and anneals singlestranded DNA
    • Ayora S, Carrasco B, Doncel-Perez E, Lurz R, Alonso JC. 2004. Bacillus subtilis RecU protein cleaves Holliday junctions and anneals singlestranded DNA. Proc Natl Acad Sci U S A. 101:452-457.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 452-457
    • Ayora, S.1    Carrasco, B.2    Doncel-Perez, E.3    Lurz, R.4    Alonso, J.C.5
  • 9
    • 41949084372 scopus 로고    scopus 로고
    • RuvA mutants that resolve Holliday junctions but do not reverse replication forks
    • Baharoglu Z, Bradley AS, Le Masson M, Tsaneva I, Michel B. 2008. ruvA mutants that resolve Holliday junctions but do not reverse replication forks. PLoS Genet. 4:e1000012.
    • (2008) PLoS Genet , vol.4 , pp. e1000012
    • Baharoglu, Z.1    Bradley, A.S.2    Le Masson, M.3    Tsaneva, I.4    Michel, B.5
  • 11
    • 33846515638 scopus 로고    scopus 로고
    • Reductive genome evolution from the mother of Rickettsia
    • Blanc G, et al. 2007. Reductive genome evolution from the mother of Rickettsia. PLoS Genet. 3:e14.
    • (2007) PLoS Genet , vol.3 , pp. e14
    • Blanc, G.1
  • 12
    • 79959371375 scopus 로고    scopus 로고
    • Formation of a stable RuvA protein double tetramer is required for efficient branch migration in vitro and for replication fork reversal in vivo
    • Bradley AS, Baharoglu Z, Niewiarowski A, Michel B, Tsaneva IR. 2011. Formation of a stable RuvA protein double tetramer is required for efficient branch migration in vitro and for replication fork reversal in vivo. J Biol Chem. 286:22372-22383.
    • (2011) J Biol Chem , vol.286 , pp. 22372-22383
    • Bradley, A.S.1    Baharoglu, Z.2    Niewiarowski, A.3    Michel, B.4    Tsaneva, I.R.5
  • 14
    • 84859112628 scopus 로고    scopus 로고
    • Short- and long-term evolutionary dynamics of bacterial insertion sequences: Insights from Wolbachia endosymbionts
    • Cerveau N, Leclercq S, Leroy E, Bouchon D, Cordaux R. 2011. Short- and long-term evolutionary dynamics of bacterial insertion sequences: Insights from Wolbachia endosymbionts. Genome Biol Evol. 3: 1175-1186.
    • (2011) Genome Biol Evol , vol.3 , pp. 1175-1186
    • Cerveau, N.1    Leclercq, S.2    Leroy, E.3    Bouchon, D.4    Cordaux, R.5
  • 15
    • 0032173615 scopus 로고    scopus 로고
    • Comparative mycobacterial genomics
    • Cole ST. 1998. Comparative mycobacterial genomics. Curr Opin Microbiol. 1:567-571.
    • (1998) Curr Opin Microbiol , vol.1 , pp. 567-571
    • Cole, S.T.1
  • 16
    • 0035931926 scopus 로고    scopus 로고
    • Massive gene decay in the leprosy bacillus
    • Cole ST, et al. 2001. Massive gene decay in the leprosy bacillus. Nature 409:1007-1011.
    • (2001) Nature , vol.409 , pp. 1007-1011
    • Cole, S.T.1
  • 17
    • 84892540871 scopus 로고    scopus 로고
    • Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes
    • Comandatore F, et al. 2013. Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biol Evol. 5:1668-1674.
    • (2013) Genome Biol Evol , vol.5 , pp. 1668-1674
    • Comandatore, F.1
  • 18
    • 67749089238 scopus 로고    scopus 로고
    • Gene conversion maintains nonfunctional transposable elements in an obligate mutualistic endosymbiont
    • Cordaux R. 2009. Gene conversion maintains nonfunctional transposable elements in an obligate mutualistic endosymbiont. Mol Biol Evol. 26: 1679-1682.
    • (2009) Mol Biol Evol , vol.26 , pp. 1679-1682
    • Cordaux, R.1
  • 19
    • 79960647285 scopus 로고    scopus 로고
    • The impact of endosymbionts on the evolution of host sex determination mechanisms
    • Cordaux R, Bouchon D, Grè ve P. 2011. The impact of endosymbionts on the evolution of host sex determination mechanisms. Trends Genet. 27:332-341.
    • (2011) Trends Genet , vol.27 , pp. 332-341
    • Cordaux, R.1    Bouchon, D.2    Grè Ve, P.3
  • 20
    • 49749127949 scopus 로고    scopus 로고
    • Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont
    • Cordaux R, et al. 2008. Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont. Mol Biol Evol. 25: 1889-1896.
    • (2008) Mol Biol Evol , vol.25 , pp. 1889-1896
    • Cordaux, R.1
  • 21
    • 0035058265 scopus 로고    scopus 로고
    • Wolbachia infection in crustaceans: Novel hosts and potential routes for horizontal transmission
    • Cordaux R, Michel-Salzat A, Bouchon D. 2001. Wolbachia infection in crustaceans: novel hosts and potential routes for horizontal transmission. J Evol Biol. 14:237-243.
    • (2001) J Evol Biol , vol.14 , pp. 237-243
    • Cordaux, R.1    Michel-Salzat, A.2    Bouchon, D.3
  • 22
    • 67749119784 scopus 로고    scopus 로고
    • Phylogenetic ubiquity and shuffling of the bacterial RecBCD and AddAB recombination complexes
    • Cromie GA. 2009. Phylogenetic ubiquity and shuffling of the bacterial RecBCD and AddAB recombination complexes. J Bacteriol. 191: 5076-5084.
    • (2009) J Bacteriol , vol.191 , pp. 5076-5084
    • Cromie, G.A.1
  • 23
    • 30744477003 scopus 로고    scopus 로고
    • The "domino theory" of gene death: Gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens
    • Dagan T, Blekhman R, Graur D. 2006. The "domino theory" of gene death: Gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens. Mol Biol Evol. 23: 310-316.
    • (2006) Mol Biol Evol , vol.23 , pp. 310-316
    • Dagan, T.1    Blekhman, R.2    Graur, D.3
  • 24
    • 0042073066 scopus 로고    scopus 로고
    • Loss of DNA recombinational repair enzymes in the initial stages of genome degeneration
    • Dale C, Wang B, Moran N, Ochman H. 2003. Loss of DNA recombinational repair enzymes in the initial stages of genome degeneration. Mol Biol Evol. 20:1188-1194.
    • (2003) Mol Biol Evol , vol.20 , pp. 1188-1194
    • Dale, C.1    Wang, B.2    Moran, N.3    Ochman, H.4
  • 25
    • 84868113800 scopus 로고    scopus 로고
    • Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis
    • Darby AC, et al. 2012. Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis. Genome Res. 22:2467-2477.
    • (2012) Genome Res , vol.22 , pp. 2467-2477
    • Darby, A.C.1
  • 26
    • 23744515783 scopus 로고    scopus 로고
    • Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects
    • Degnan PH, Lazarus AB, Wernegreen JJ. 2005. Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. Genome Res. 15:1023-1033.
    • (2005) Genome Res , vol.15 , pp. 1023-1033
    • Degnan, P.H.1    Lazarus, A.B.2    Wernegreen, J.J.3
  • 27
    • 84878534378 scopus 로고    scopus 로고
    • Genomics of Loa loa, a Wolbachia-free filarial parasite of humans
    • Desjardins CA, et al. 2013. Genomics of Loa loa, a Wolbachia-free filarial parasite of humans. Nat Genet. 45:495-500.
    • (2013) Nat Genet , vol.45 , pp. 495-500
    • Desjardins, C.A.1
  • 28
    • 84872190079 scopus 로고    scopus 로고
    • Draft genome sequence of the male-killing Wolbachia strain wBol1 reveals recent horizontal gene transfers from diverse sources
    • Duplouy A, et al. 2013. Draft genome sequence of the male-killing Wolbachia strain wBol1 reveals recent horizontal gene transfers from diverse sources. BMC Genomics 14:20.
    • (2013) BMC Genomics , vol.14 , pp. 20
    • Duplouy, A.1
  • 30
    • 0030790687 scopus 로고    scopus 로고
    • Common themes in microbial pathogenicity revisited
    • Finlay BB, Falkow S. 1997. Common themes in microbial pathogenicity revisited. Microbiol Mol Biol Rev. 61:136-169.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 136-169
    • Finlay, B.B.1    Falkow, S.2
  • 31
    • 21144432943 scopus 로고    scopus 로고
    • The Wolbachia genome of Brugia malayi: Endosymbiont evolution within a human pathogenic nematode
    • Foster J, et al. 2005. The Wolbachia genome of Brugia malayi: Endosymbiont evolution within a human pathogenic nematode. PLoS Biol. 3: E121.
    • (2005) PLoS Biol , vol.3 , pp. e121
    • Foster, J.1
  • 32
    • 23644457026 scopus 로고    scopus 로고
    • The roles of positive and negative selection in the molecular evolution of insect endosymbionts
    • Fry AJ, Wernegreen JJ. 2005. The roles of positive and negative selection in the molecular evolution of insect endosymbionts. Gene 355: 1-10.
    • (2005) Gene , vol.355 , pp. 1-10
    • Fry, A.J.1    Wernegreen, J.J.2
  • 33
    • 37449025007 scopus 로고    scopus 로고
    • Functional significance of octameric RuvA for a branch migration complex from Thermus thermophilus
    • Fujiwara Y, Mayanagi K, Morikawa K. 2008. Functional significance of octameric RuvA for a branch migration complex from Thermus thermophilus. Biochem Biophys Res Commun. 366:426-431.
    • (2008) Biochem Biophys Res Commun , vol.366 , pp. 426-431
    • Fujiwara, Y.1    Mayanagi, K.2    Morikawa, K.3
  • 34
    • 43549090899 scopus 로고    scopus 로고
    • Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction
    • Fuxelius H, Darby AC, Cho N, Andersson SGE. 2008. Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction. Genome Biol. 9:R42.
    • (2008) Genome Biol , vol.9 , pp. R42
    • Fuxelius, H.1    Darby, A.C.2    Cho, N.3    Andersson, S.G.E.4
  • 35
    • 0041422250 scopus 로고    scopus 로고
    • The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes
    • Gil R, et al. 2003. The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes. Proc Natl Acad Sci U S A. 100: 9388-9393.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9388-9393
    • Gil, R.1
  • 36
    • 84868274725 scopus 로고    scopus 로고
    • The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets
    • Godel C, et al. 2012. The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J. 26:4650-4661.
    • (2012) FASEB J , vol.26 , pp. 4650-4661
    • Godel, C.1
  • 37
    • 6344269329 scopus 로고    scopus 로고
    • The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola
    • Gómez-Valero L, Latorre A, Silva FJ. 2004. The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola. Mol Biol Evol. 21:2172-2181.
    • (2004) Mol Biol Evol , vol.21 , pp. 2172-2181
    • GóMez-Valero, L.1    Latorre, A.2    Silva, F.J.3
  • 38
    • 0036791017 scopus 로고    scopus 로고
    • Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
    • Itoh T, Martin W, Nei M. 2002. Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proc Natl Acad Sci U S A. 99:12944-12948.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12944-12948
    • Itoh, T.1    Martin, W.2    Nei, M.3
  • 39
    • 77950857181 scopus 로고    scopus 로고
    • Phage WO of Wolbachia: Lambda of the endosymbiont world
    • Kent BN, Bordenstein SR. 2010. Phage WO of Wolbachia: Lambda of the endosymbiont world. Trends Microbiol. 18:173-181.
    • (2010) Trends Microbiol , vol.18 , pp. 173-181
    • Kent, B.N.1    Bordenstein, S.R.2
  • 40
    • 79954577654 scopus 로고    scopus 로고
    • Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture
    • Kent BN, et al. 2011. Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture. Genome Biol Evol. 3:209-218.
    • (2011) Genome Biol Evol , vol.3 , pp. 209-218
    • Kent, B.N.1
  • 41
    • 49749134637 scopus 로고    scopus 로고
    • Genome evolution of Wolbachia strain wPip from the Culex pipiens group
    • Klasson L, et al. 2008. Genome evolution of Wolbachia strain wPip from the Culex pipiens group. Mol Biol Evol. 25:1877-1887.
    • (2008) Mol Biol Evol , vol.25 , pp. 1877-1887
    • Klasson, L.1
  • 42
    • 65249166565 scopus 로고    scopus 로고
    • The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
    • Klasson L, et al. 2009. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 106: 57225-57230.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 57225-57230
    • Klasson, L.1
  • 43
  • 44
    • 0034176335 scopus 로고    scopus 로고
    • Initiation of genetic recombination and recombination- dependent replication
    • Kowalczykowski SC. 2000. Initiation of genetic recombination and recombination- dependent replication. Trends Biochem Sci. 25:156-165.
    • (2000) Trends Biochem Sci , vol.25 , pp. 156-165
    • Kowalczykowski, S.C.1
  • 45
    • 52649167880 scopus 로고    scopus 로고
    • RuvA and ruvB mutants specifically impaired for replication fork reversal
    • Le Masson M, Baharoglu Z, Michel B. 2008. ruvA and ruvB mutants specifically impaired for replication fork reversal. Mol Microbiol. 70: 537-548.
    • (2008) Mol Microbiol , vol.70 , pp. 537-548
    • Le Masson, M.1    Baharoglu, Z.2    Michel, B.3
  • 46
    • 78650485280 scopus 로고    scopus 로고
    • Remarkable abundance and evolution of mobile group II introns inWolbachia bacterial endosymbionts
    • Leclercq S, Giraud I, Cordaux R. 2011. Remarkable abundance and evolution of mobile group II introns inWolbachia bacterial endosymbionts. Mol Biol Evol. 28:685-697.
    • (2011) Mol Biol Evol , vol.28 , pp. 685-697
    • Leclercq, S.1    Giraud, I.2    Cordaux, R.3
  • 47
    • 33947431662 scopus 로고    scopus 로고
    • Taxonomic status of the intracellular bacterium Wolbachia pipientis
    • Lo N, et al. 2007. Taxonomic status of the intracellular bacterium Wolbachia pipientis. Int J Syst Evol Microbiol. 57:654-657.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 654-657
    • Lo, N.1
  • 48
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: A flexible and fast computer program for analyzing recombination
    • Martin DP, et al. 2010. RDP3: A flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1
  • 49
    • 84860345118 scopus 로고    scopus 로고
    • Whole-genome sequence of Wolbachia strain wAlbB, an endosymbiont of tiger mosquito vector Aedes albopictus
    • Mavingui P, et al. 2012. Whole-genome sequence of Wolbachia strain wAlbB, an endosymbiont of tiger mosquito vector Aedes albopictus. J Bacteriol. 194:1840.
    • (2012) J Bacteriol , vol.194 , pp. 1840
    • Mavingui, P.1
  • 50
    • 36249023275 scopus 로고    scopus 로고
    • Electron microscopic single particle analysis of a tetrameric RuvA/RuvB/Holliday junction DNA complex
    • Mayanagi K, Fujiwara Y, Miyata T, Morikawa K. 2008. Electron microscopic single particle analysis of a tetrameric RuvA/RuvB/Holliday junction DNA complex. Biochem Biophys Res Commun. 365:273-278.
    • (2008) Biochem Biophys Res Commun , vol.365 , pp. 273-278
    • Mayanagi, K.1    Fujiwara, Y.2    Miyata, T.3    Morikawa, K.4
  • 51
    • 83855165692 scopus 로고    scopus 로고
    • Extreme genome reduction in symbiotic bacteria
    • McCutcheon J, Moran N. 2012. Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol. 10:13-26.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 13-26
    • McCutcheon, J.1    Moran, N.2
  • 52
    • 1942488150 scopus 로고    scopus 로고
    • RecG helicase promotes DNA double-strand break repair
    • Meddows TR, Savory AP, Lloyd RG. 2004. RecG helicase promotes DNA double-strand break repair. Mol Microbiol. 52:119-132.
    • (2004) Mol Microbiol , vol.52 , pp. 119-132
    • Meddows, T.R.1    Savory, A.P.2    Lloyd, R.G.3
  • 53
    • 0031766235 scopus 로고    scopus 로고
    • Differential roles of homologous recombination pathways in Neisseria gonorrhoeae pilin antigenic variation, DNA transformation and DNA repair
    • Mehr IJ, Seifert HS. 1998. Differential roles of homologous recombination pathways in Neisseria gonorrhoeae pilin antigenic variation, DNA transformation and DNA repair. Mol Microbiol. 30:697-710.
    • (1998) Mol Microbiol , vol.30 , pp. 697-710
    • Mehr, I.J.1    Seifert, H.S.2
  • 55
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira A, Ochman H, Moran NA. 2001. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:589-596.
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 56
    • 0029866448 scopus 로고    scopus 로고
    • Accelerated evolution and Muller's ratchet in endosymbiotic bacteria
    • Moran NA. 1996. Accelerated evolution and Muller's ratchet in endosymbiotic bacteria. Proc Natl Acad Sci U S A. 93:2973-2878.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 2973
    • Moran, N.A.1
  • 57
    • 58449125407 scopus 로고    scopus 로고
    • Genomics and evolution of heritable bacterial symbionts
    • Moran NA, McCutcheon JP, Nakabachi A. 2008. Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet. 42:165-190.
    • (2008) Annu Rev Genet , vol.42 , pp. 165-190
    • Moran, N.A.1    McCutcheon, J.P.2    Nakabachi, A.3
  • 58
    • 58449126084 scopus 로고    scopus 로고
    • The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria
    • Moran NA, McLaughlin HJ, Sorek R. 2009. The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. Science 323:379-382.
    • (2009) Science , vol.323 , pp. 379-382
    • Moran, N.A.1    McLaughlin, H.J.2    Sorek, R.3
  • 59
    • 0035749612 scopus 로고    scopus 로고
    • The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
    • RESEARCH0054
    • Moran NA, Mira A. 2001. The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biol. 2:RESEARCH0054.
    • (2001) Genome Biol , vol.2
    • Moran, N.A.1    Mira, A.2
  • 60
    • 8644224924 scopus 로고    scopus 로고
    • Genomic changes following host restriction in bacteria
    • Moran NA, Plague GR. 2004. Genomic changes following host restriction in bacteria. Curr Opin Genet Dev. 14:627-633.
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 627-633
    • Moran, N.A.1    Plague, G.R.2
  • 61
    • 39449118068 scopus 로고    scopus 로고
    • Learning how to live together: Genomic insights into prokaryote-animal symbioses
    • Moya A, Pereto J, Gil R, Latorre A. 2008. Learning how to live together: Genomic insights into prokaryote-animal symbioses. Nat Rev Genet. 9: 218-229.
    • (2008) Nat Rev Genet , vol.9 , pp. 218-229
    • Moya, A.1    Pereto, J.2    Gil, R.3    Latorre, A.4
  • 62
    • 24744468387 scopus 로고    scopus 로고
    • Bacterial genome size reduction by experimental evolution
    • Nilsson AI, et al. 2005. Bacterial genome size reduction by experimental evolution. Proc Natl Acad Sci U S A. 102:12112-12116.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 12112-12116
    • Nilsson, A.I.1
  • 63
    • 0032518238 scopus 로고    scopus 로고
    • Functional analyses of the domain structure in the Holliday junction binding protein RuvA
    • Nishino T, Ariyoshi M, Iwasaki H, Shinagawa H, Morikawa K. 1998. Functional analyses of the domain structure in the Holliday junction binding protein RuvA. Structure 6:11-21.
    • (1998) Structure , vol.6 , pp. 11-21
    • Nishino, T.1    Ariyoshi, M.2    Iwasaki, H.3    Shinagawa, H.4    Morikawa, K.5
  • 64
    • 0034607557 scopus 로고    scopus 로고
    • Modulation of RuvB function by the mobile domain III of the Holliday junction recognition protein RuvA
    • Nishino T, et al. 2000. Modulation of RuvB function by the mobile domain III of the Holliday junction recognition protein RuvA. J Mol Biol. 298: 407-416.
    • (2000) J Mol Biol , vol.298 , pp. 407-416
    • Nishino, T.1
  • 65
    • 0035860458 scopus 로고    scopus 로고
    • Mechanisms of evolution in Rickettsia conorii and R. Prowazekii
    • Ogata H, et al.Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 293:2093-2098.
    • Science , vol.293 , pp. 2093-2098
    • Ogata, H.1
  • 66
    • 20344375440 scopus 로고    scopus 로고
    • Discovery of protein-coding palindromic repeats in Wolbachia
    • Ogata H, Suhre K, Claverie J. 2005. Discovery of protein-coding palindromic repeats in Wolbachia. Trends Microbiol. 13:253-255.
    • (2005) Trends Microbiol , vol.13 , pp. 253-255
    • Ogata, H.1    Suhre, K.2    Claverie, J.3
  • 67
    • 0001654122 scopus 로고    scopus 로고
    • Development of neutral and nearly neutral theories
    • Ohta T, Gillespie J. 1996. Development of neutral and nearly neutral theories. Theor Popul Biol. 49:128-142.
    • (1996) Theor Popul Biol , vol.49 , pp. 128-142
    • Ohta, T.1    Gillespie, J.2
  • 68
    • 38749096320 scopus 로고    scopus 로고
    • Extensive proliferation of transposable elements in heritable bacterial symbionts
    • Plague GR, Dunbar HE, Tran PL, Moran NA. 2008. Extensive proliferation of transposable elements in heritable bacterial symbionts. J Bacteriol. 190:777-779.
    • (2008) J Bacteriol , vol.190 , pp. 777-779
    • Plague, G.R.1    Dunbar, H.E.2    Tran, P.L.3    Moran, N.A.4
  • 69
    • 33747160146 scopus 로고    scopus 로고
    • Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination
    • Prabu JR, et al. 2006. Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination. Acta Crystallogr Sect F Struct Biol Cryst Commun. 62:731-734.
    • (2006) Acta Crystallogr Sect F Struct Biol Cryst Commun , vol.62 , pp. 731-734
    • Prabu, J.R.1
  • 70
    • 65549095725 scopus 로고    scopus 로고
    • Crystallographic and modelling studies on Mycobacterium tuberculosis RuvA additional role of RuvB-binding domain and inter species variability
    • Prabu JR, et al. 2009. Crystallographic and modelling studies on Mycobacterium tuberculosis RuvA additional role of RuvB-binding domain and inter species variability. Biochim Biophys Acta. 1794: 1001-1009.
    • (2009) Biochim Biophys Acta , vol.1794 , pp. 1001-1009
    • Prabu, J.R.1
  • 71
    • 13544260497 scopus 로고    scopus 로고
    • The role of RuvA octamerization for RuvAB function in vitro and in vivo
    • Privezentzev CV, Keeley A, Sigala B, Tsaneva IR. 2005. The role of RuvA octamerization for RuvAB function in vitro and in vivo. J Biol Chem. 280:3365-3375.
    • (2005) J Biol Chem , vol.280 , pp. 3365-3375
    • Privezentzev, C.V.1    Keeley, A.2    Sigala, B.3    Tsaneva, I.R.4
  • 72
    • 0029806695 scopus 로고    scopus 로고
    • Crystal structure of DNA recombination protein RuvA and amodel for its binding to the Holliday junction
    • Rafferty JB, et al. 1996. Crystal structure of DNA recombination protein RuvA and amodel for its binding to the Holliday junction. Science 274: 415-421.
    • (1996) Science , vol.274 , pp. 415-421
    • Rafferty, J.B.1
  • 73
    • 55449115425 scopus 로고    scopus 로고
    • Comparative and evolutionary analysis of the bacterial homologous recombination systems
    • Rocha EPC, Cornet E, Michel B. 2005. Comparative and evolutionary analysis of the bacterial homologous recombination systems. PLoS Genet. 1:e15.
    • (2005) PLoS Genet , vol.1 , pp. e15
    • Epc, R.1    Cornet, E.2    Michel, B.3
  • 74
    • 0032161128 scopus 로고    scopus 로고
    • Crystal structure of an octameric RuvA-Holliday junction complex
    • Roe SM, et al. 1998. Crystal structure of an octameric RuvA-Holliday junction complex. Mol Cell. 2:361-372.
    • (1998) Mol Cell , vol.2 , pp. 361-372
    • Roe, S.M.1
  • 75
    • 84869233594 scopus 로고    scopus 로고
    • Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome
    • Saha S, et al. 2012. Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome. PLoS One 7: E50067.
    • (2012) PLoS One , vol.7 , pp. e50067
    • Saha, S.1
  • 76
    • 62649165519 scopus 로고    scopus 로고
    • Genome sequence of the Wolbachia endosymbiont of Culex quinquefasciatus JHB
    • Salzberg SL, Puiu D, Sommer DD, Nene V, Lee NH. 2009. Genome sequence of the Wolbachia endosymbiont of Culex quinquefasciatus JHB. J Bacteriol. 191:1725.
    • (2009) J Bacteriol , vol.191 , pp. 1725
    • Salzberg, S.L.1    Puiu, D.2    Sommer, D.D.3    Nene, V.4    Lee, N.H.5
  • 77
    • 0035500843 scopus 로고    scopus 로고
    • Genome size reduction through multiple events of gene disintegration in Buchnera APS
    • Silva FJ, Latorre A,Moya A. 2001. Genome size reduction through multiple events of gene disintegration in Buchnera APS. Trends Genet. 17: 615-618.
    • (2001) Trends Genet , vol.17 , pp. 615-618
    • Silva, F.J.1    Latorre Amoya, A.2
  • 78
    • 0037384544 scopus 로고    scopus 로고
    • Why are the genomes of endosymbiotic bacteria so stable?
    • Silva FJ, Latorre A, Moya A. 2003. Why are the genomes of endosymbiotic bacteria so stable? Trends Genet. 19:176-180.
    • (2003) Trends Genet , vol.19 , pp. 176-180
    • Silva, F.J.1    Latorre, A.2    Moya, A.3
  • 79
    • 84994009499 scopus 로고    scopus 로고
    • Draft genome sequence of the Wolbachia endosymbiont of Drosophila suzukii
    • Siozios S, et al. 2013. Draft genome sequence of the Wolbachia endosymbiont of Drosophila suzukii. Genome Announc. 1: E00032-13.
    • (2013) Genome Announc , vol.1 , pp. e00032-e00113
    • Siozios, S.1
  • 80
    • 0037189373 scopus 로고    scopus 로고
    • 50 million years of genomic stasis in endosymbiotic bacteria
    • Tamas I, et al. 2002. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296:2376-2379.
    • (2002) Science , vol.296 , pp. 2376-2379
    • Tamas, I.1
  • 81
    • 54449100127 scopus 로고    scopus 로고
    • Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts
    • Tamas I, et al. 2008. Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts. Proc Natl Acad Sci U S A. 105: 14934-14939.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 14934-14939
    • Tamas, I.1
  • 82
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 83
    • 77953809752 scopus 로고    scopus 로고
    • Evolutionary microbial genomics: Insights into bacterial hos adaptation
    • Toft C, Andersson SGE. 2010. Evolutionary microbial genomics: Insights into bacterial hos adaptation. Nat Rev Genet. 11:465-475.
    • (2010) Nat Rev Genet , vol.11 , pp. 465-475
    • Toft, C.1    Andersson, S.G.E.2
  • 85
    • 84862998369 scopus 로고    scopus 로고
    • An at mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia
    • Van Leuven JT, McCutcheon JP. 2012. An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia. Genome Biol Evol. 4: 24-27.
    • (2012) Genome Biol Evol , vol.4 , pp. 24-27
    • Van Leuven, J.T.1    McCutcheon, J.P.2
  • 86
    • 56349143347 scopus 로고    scopus 로고
    • Does my genome look big in this ?
    • Walker A, Langridge G. 2008. Does my genome look big in this ? Nat Rev Microbiol. 6:878-879.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 878-879
    • Walker, A.1    Langridge, G.2
  • 87
    • 27444444566 scopus 로고    scopus 로고
    • For better or worse: Genomic consequences of intracellular mutualism and parasitism
    • Wernegreen JJ. 2005. For better or worse: Genomic consequences of intracellular mutualism and parasitism. Curr Opin Genet Dev. 15: 572-583.
    • (2005) Curr Opin Genet Dev , vol.15 , pp. 572-583
    • Wernegreen, J.J.1
  • 88
    • 11944272022 scopus 로고    scopus 로고
    • Mutation exposed: A neutral explanation for extreme base composition of an endosymbiont genome
    • Wernegreen JJ, Funk DJ. 2004. Mutation exposed: A neutral explanation for extreme base composition of an endosymbiont genome. J Mol Evol. 59:849-858.
    • (2004) J Mol Evol , vol.59 , pp. 849-858
    • Wernegreen, J.J.1    Funk, D.J.2
  • 89
    • 0032948901 scopus 로고    scopus 로고
    • Evidence for genetic drift in endosymbionts (Buchnera): Analyses of protein-coding genes
    • Wernegreen JJ, Moran NA. 1999. Evidence for genetic drift in endosymbionts (Buchnera): Analyses of protein-coding genes. Mol Biol Evol. 16: 83-97.
    • (1999) Mol Biol Evol , vol.16 , pp. 83-97
    • Wernegreen, J.J.1    Moran, N.A.2
  • 90
    • 52049111890 scopus 로고    scopus 로고
    • Wolbachia: Master manipulators of invertebrate biology
    • Werren JH, Baldo L, Clark ME. 2008. Wolbachia: Master manipulators of invertebrate biology. Nat Rev Microbiol. 6:741-751.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 741-751
    • Werren, J.H.1    Baldo, L.2    Clark, M.E.3
  • 91
    • 0035916791 scopus 로고    scopus 로고
    • Recombination in Wolbachia
    • Werren JH, Bartos JD. 2001. Recombination in Wolbachia. Curr Biol. 11: 431-435.
    • (2001) Curr Biol , vol.11 , pp. 431-435
    • Werren, J.H.1    Bartos, J.D.2
  • 92
    • 0041695491 scopus 로고    scopus 로고
    • Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes
    • Woolfit M, Bromham L. 2003. Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes. Mol Biol Evol. 20:1545-1555.
    • (2003) Mol Biol Evol , vol.20 , pp. 1545-1555
    • Woolfit, M.1    Bromham, L.2
  • 93
    • 2142695109 scopus 로고    scopus 로고
    • Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: A streamlined genome overrun by mobile genetics elements
    • Wu M, et al. 2004. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: A streamlined genome overrun by mobile genetics elements. PLoS Biol. 2:0327.
    • (2004) PLoS Biol , vol.2 , pp. 0327
    • Wu, M.1
  • 94
    • 18644379392 scopus 로고    scopus 로고
    • Crystal structure of the RuvA-RuvB complex: A structural basis for the Holliday junction migrating motor machinery
    • Yamada K, et al. 2002. Crystal structure of the RuvA-RuvB complex: A structural basis for the Holliday junction migrating motor machinery. Mol Cell. 10:671-681.
    • (2002) Mol Cell , vol.10 , pp. 671-681
    • Yamada, K.1
  • 95
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15: 568-573.
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 96
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 97
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WSW, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22: 1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wsw, W.2    Nielsen, R.3
  • 98
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 99
    • 9244236007 scopus 로고    scopus 로고
    • The recombination genes AddAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes RecF and AddAB in Rhizobium etli
    • Zuñiga-Castillo J, Romero D, Martínez-Salazar JM. 2004. The recombination genes AddAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes RecF and AddAB in Rhizobium etli. J Bacteriol. 186:7905-7913.
    • (2004) J Bacteriol , vol.186 , pp. 7905-7913
    • ZuñIga-Castillo, J.1    Romero, D.2    Martínez-Salazar, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.