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Volumn 6, Issue 1, 1998, Pages 11-21

Functional analyses of the domain structure in the Holliday junction binding protein RuvA

Author keywords

DNA repair; Holliday junction; Homologous recombination; X ray crystallography

Indexed keywords

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0032518238     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(98)00003-3     Document Type: Article
Times cited : (48)

References (25)
  • 1
    • 0028924441 scopus 로고
    • Molecular mechanisms of Holliday junction processing in Escherichia coli
    • Shinagawa, H. & Iwasaki, H. (1995). Molecular mechanisms of Holliday junction processing in Escherichia coli. Adv. Biophys. 31, 49-65.
    • (1995) Adv. Biophys. , vol.31 , pp. 49-65
    • Shinagawa, H.1    Iwasaki, H.2
  • 2
    • 0029911566 scopus 로고    scopus 로고
    • The RuvABC proteins and Holliday junction processing in Escherichia coli
    • West, S.C. (1996). The RuvABC proteins and Holliday junction processing in Escherichia coli. J. Bacteriol. 178, 1237-1241.
    • (1996) J. Bacteriol. , vol.178 , pp. 1237-1241
    • West, S.C.1
  • 3
    • 0029995337 scopus 로고    scopus 로고
    • Processing the Holliday junction in homologous recombination
    • Shinagawa, H. & Iwasaki, H. (1996). Processing the Holliday junction in homologous recombination. Trends Biochem. Sci. 21, 107-111.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 107-111
    • Shinagawa, H.1    Iwasaki, H.2
  • 4
    • 0028968305 scopus 로고
    • Structure of a multisubunit complex that promotes DNA branch migration
    • Parsons, C.A., Stasiak, A., Bennett, R.J. & West, S.C. (1995). Structure of a multisubunit complex that promotes DNA branch migration. Nature 374, 375-378.
    • (1995) Nature , vol.374 , pp. 375-378
    • Parsons, C.A.1    Stasiak, A.2    Bennett, R.J.3    West, S.C.4
  • 5
    • 0031581811 scopus 로고    scopus 로고
    • Structure and subunit composition of the RuvAB-Holliday junction complex
    • Yu, X., West, S.C. & Egelman, E.H. (1997). Structure and subunit composition of the RuvAB-Holliday junction complex. J. Mol. Biol. 266, 217-222.
    • (1997) J. Mol. Biol. , vol.266 , pp. 217-222
    • Yu, X.1    West, S.C.2    Egelman, E.H.3
  • 6
    • 0026633047 scopus 로고
    • ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli
    • Tsaneva, I.R., Muller, B. & West, S.C. (1992). ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli. Cell 69, 1171 -1180.
    • (1992) Cell , vol.69 , pp. 1171-1180
    • Tsaneva, I.R.1    Muller, B.2    West, S.C.3
  • 7
    • 0026482604 scopus 로고
    • Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration
    • Iwasaki, H., Takahagi, M., Nakata, A. & Shinagawa, H. (1992). Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration. Genes Dev. 6, 2214-2220.
    • (1992) Genes Dev. , vol.6 , pp. 2214-2220
    • Iwasaki, H.1    Takahagi, M.2    Nakata, A.3    Shinagawa, H.4
  • 8
    • 0026058539 scopus 로고
    • SOS-inducible DNA repair proteins, RuvA and RuvB, of Escherichia coli: Functional interactions between RuvA and RuvB for ATP hydrolysis and renaturation of the cruciform structure in supercoiled DNA
    • Shiba, T., Iwasaki, H., Nakata, A. & Shinagawa, H. (1991). SOS-inducible DNA repair proteins, RuvA and RuvB, of Escherichia coli: functional interactions between RuvA and RuvB for ATP hydrolysis and renaturation of the cruciform structure in supercoiled DNA. Proc. Natl Acad. Sci. USA 88, 8445-8449.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 8445-8449
    • Shiba, T.1    Iwasaki, H.2    Nakata, A.3    Shinagawa, H.4
  • 9
    • 0028120546 scopus 로고
    • Atomic structure of the RuvC resolvase: A Holliday junction-specific endonuclease from E. coli
    • Ariyoshi, M., et al., & Morikawa, K. (1994). Atomic structure of the RuvC resolvase: a Holliday junction-specific endonuclease from E. coli. Cell 78, 1063-1072.
    • (1994) Cell , vol.78 , pp. 1063-1072
    • Ariyoshi, M.1    Morikawa, K.2
  • 10
    • 0027376095 scopus 로고
    • Resolution of Holliday junctions by RuvC resolvase: Cleavage specificity and DNA distortion
    • Bennett, R.J., Dunderdale, H.J. & West, S.C. (1993). Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion. Cell 74, 1021-1031.
    • (1993) Cell , vol.74 , pp. 1021-1031
    • Bennett, R.J.1    Dunderdale, H.J.2    West, S.C.3
  • 11
    • 0029142820 scopus 로고
    • Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase
    • Saito, A., Iwasaki, H., Ariyoshi, M., Morikawa, K. & Shinagawa, H. (1995). Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase. Proc. Natl Acad. Sci. USA 92, 7470-7474.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7470-7474
    • Saito, A.1    Iwasaki, H.2    Ariyoshi, M.3    Morikawa, K.4    Shinagawa, H.5
  • 12
    • 0029806695 scopus 로고    scopus 로고
    • Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction
    • Rafferty, J.B., et al., & Rice, D.W. (1996). Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction. Science 274, 415-421.
    • (1996) Science , vol.274 , pp. 415-421
    • Rafferty, J.B.1    Rice, D.W.2
  • 13
    • 0030961652 scopus 로고    scopus 로고
    • Crystallization of E. coli RuvA gives insights into the symmetry of a Holliday junction/protein complex
    • Sedelnikova, S.E., et al., & Rice, D.W. (1997). Crystallization of E. coli RuvA gives insights into the symmetry of a Holliday junction/protein complex. Acta Cryst. D 53, 122-124.
    • (1997) Acta Cryst. D , vol.53 , pp. 122-124
    • Sedelnikova, S.E.1    Rice, D.W.2
  • 14
    • 0027479161 scopus 로고
    • OB (oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
    • Murzin, A.G. (1993). OB (oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 12, 861-867.
    • (1993) EMBO J. , vol.12 , pp. 861-867
    • Murzin, A.G.1
  • 15
    • 0031090688 scopus 로고    scopus 로고
    • Common fold, common function, common origin?
    • Suck, D. (1997). Common fold, common function, common origin? Nat. Struct. Biol. 4, 161 -165.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 161-165
    • Suck, D.1
  • 16
    • 0031023811 scopus 로고    scopus 로고
    • Crystal structure of human mitochondrial single-stranded DNA binding protein at 2.4 Å resolution
    • Yang, C., Curth, U., Urbanke, C. & Kang, C. (1997). Crystal structure of human mitochondrial single-stranded DNA binding protein at 2.4 Å resolution. Nat. Struct. Biol. 4, 153-157.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 153-157
    • Yang, C.1    Curth, U.2    Urbanke, C.3    Kang, C.4
  • 17
    • 0031030449 scopus 로고    scopus 로고
    • Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA
    • Bochkarev, A., Pfuetzner, R.A., Edwards, A.M. & Frappier, L. (1997). Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. Nature 385, 176-181.
    • (1997) Nature , vol.385 , pp. 176-181
    • Bochkarev, A.1    Pfuetzner, R.A.2    Edwards, A.M.3    Frappier, L.4
  • 18
    • 0029929070 scopus 로고    scopus 로고
    • The helix-hairpinhelix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA
    • Doherty, A.J., Serpell, L.C. & Ponting, C.P. (1996). The helix-hairpinhelix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Res. 24, 2488-2497.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2488-2497
    • Doherty, A.J.1    Serpell, L.C.2    Ponting, C.P.3
  • 19
    • 0030596061 scopus 로고    scopus 로고
    • Interactions between RuvA and RuvC at Holliday junctions: Inhibition of junction cleavage and formation of a RuvA-RuvC-DNA complex
    • Whitby, M.C., Bolt, E.L., Chan, S.N. & Lloyd, R.G. (1996). Interactions between RuvA and RuvC at Holliday junctions: inhibition of junction cleavage and formation of a RuvA-RuvC-DNA complex. J. Mol. Biol. 264, 878-890.
    • (1996) J. Mol. Biol. , vol.264 , pp. 878-890
    • Whitby, M.C.1    Bolt, E.L.2    Chan, S.N.3    Lloyd, R.G.4
  • 20
    • 0028170790 scopus 로고
    • Hexameric rings of Escherichia coli RuvB protein. Cooperative assembly, processivity and ATPase activity
    • Mitchell, A.H. & West, S.C. (1994). Hexameric rings of Escherichia coli RuvB protein. Cooperative assembly, processivity and ATPase activity. J. Mol. Biol. 243, 208-215.
    • (1994) J. Mol. Biol. , vol.243 , pp. 208-215
    • Mitchell, A.H.1    West, S.C.2
  • 21
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T.A., Roberts, J.D. & Zakour, R.A. (1987). Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154, 367-382.
    • (1987) Methods Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 22
    • 0025262173 scopus 로고
    • Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
    • Hendrickson, W.A., Horton, J.R. & LeMaster, D.M. (1990). Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J. 9, 1665-1672.
    • (1990) EMBO J. , vol.9 , pp. 1665-1672
    • Hendrickson, W.A.1    Horton, J.R.2    LeMaster, D.M.3
  • 23
    • 0002452464 scopus 로고
    • Oscillation data reduction program
    • Sawyer, L., Isaacs, N. and Bailey, S., eds, Warrington
    • Otwinowski, Z. (1993). Oscillation data reduction program. In Data Collection and Processing. (Sawyer, L., Isaacs, N. and Bailey, S., eds), pp. 55-62, Warrington.
    • (1993) Data Collection and Processing , pp. 55-62
    • Otwinowski, Z.1
  • 24
    • 0028103275 scopus 로고
    • The CCP4 Suite: Programs for Protein Crystallography
    • Collaborative Computational Project No.4. (1994). The CCP4 Suite: Programs for Protein Crystallography. Acta Cryst. D 50, 760-763.
    • (1994) Acta Cryst. D , vol.50 , pp. 760-763
  • 25
    • 0023140814 scopus 로고
    • Refinement by simulated annealing
    • Brünger, A.T., Kuriyan, J. & Karplus, M. (1987). Refinement by simulated annealing. Science 235, 458-460.
    • (1987) Science , vol.235 , pp. 458-460
    • Brünger, A.T.1    Kuriyan, J.2    Karplus, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.