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Volumn 21, Issue 3, 2015, Pages 280-287

Whole genome characterization of hepatitis B virus quasispecies with massively parallel pyrosequencing

Author keywords

Hepatitis B virus; Liver disease; Mutations; Quasispecies; Sequencing

Indexed keywords

AMPLICON; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; HEPATITIS B VIRUS; HEPATITIS B VIRUS GENOTYPE B; HEPATITIS B VIRUS GENOTYPE C; HUMAN; LIVER DISEASE; MUTATION RATE; NONHUMAN; POINT MUTATION; POLYMERASE CHAIN REACTION; POPULATION; PRIORITY JOURNAL; PYROSEQUENCING; VIRAL QUASISPECIES PYROSEQUENCING; VIRUS DETECTION; VIRUS GENOME; VIRUS MUTATION; AMINO ACID SUBSTITUTION; CHRONIC HEPATITIS B; CLUSTER ANALYSIS; DISEASE COURSE; GENE DELETION; GENETIC VARIATION; GENETICS; GENOMICS; HETEROZYGOTE; HIGH THROUGHPUT SEQUENCING; MUTATION; PATHOLOGY; VIROLOGY; VIRUS GENE;

EID: 84933516529     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2014.10.007     Document Type: Article
Times cited : (21)

References (27)
  • 4
    • 0037942914 scopus 로고    scopus 로고
    • Genome replication, virion secretion, and e antigen expression of naturally occurring hepatitis B virus core promoter mutants
    • Parekh S., Zoulim F., Ahn S.H., Tsai A., Li J., Kawai S., et al. Genome replication, virion secretion, and e antigen expression of naturally occurring hepatitis B virus core promoter mutants. J Virol 2003, 77:6601-6612.
    • (2003) J Virol , vol.77 , pp. 6601-6612
    • Parekh, S.1    Zoulim, F.2    Ahn, S.H.3    Tsai, A.4    Li, J.5    Kawai, S.6
  • 5
    • 0035502957 scopus 로고    scopus 로고
    • Biological impact of natural cooh-terminal deletions of hepatitis b virus x protein in hepatocellular carcinoma tissues
    • Tu H., Bonura C., Giannini C., Mouly H., Soussan P., Kew M., et al. Biological impact of natural cooh-terminal deletions of hepatitis b virus x protein in hepatocellular carcinoma tissues. Cancer Res 2001, 61:7803-7810.
    • (2001) Cancer Res , vol.61 , pp. 7803-7810
    • Tu, H.1    Bonura, C.2    Giannini, C.3    Mouly, H.4    Soussan, P.5    Kew, M.6
  • 6
    • 16244375544 scopus 로고    scopus 로고
    • Hepatitis B virus pre-s2 mutant upregulates cyclin a expression and induces nodular proliferation of hepatocytes
    • Wang H.C., Chang W.T., Chang W.W., Wu H.C., Huang W., Lei H.Y., et al. Hepatitis B virus pre-s2 mutant upregulates cyclin a expression and induces nodular proliferation of hepatocytes. Hepatology 2005, 41:761-770.
    • (2005) Hepatology , vol.41 , pp. 761-770
    • Wang, H.C.1    Chang, W.T.2    Chang, W.W.3    Wu, H.C.4    Huang, W.5    Lei, H.Y.6
  • 8
    • 72849122618 scopus 로고    scopus 로고
    • Low-abundance drug resistance mutations: extending the HIV paradigm to hepatitis B virus
    • author reply 1799-800
    • Menzo S., Vincenti D., Solmone M., Prosperi M., Bruselles A., Abbate I., et al. Low-abundance drug resistance mutations: extending the HIV paradigm to hepatitis B virus. J Infect Dis 2009, 200:1798-1799. author reply 1799-800.
    • (2009) J Infect Dis , vol.200 , pp. 1798-1799
    • Menzo, S.1    Vincenti, D.2    Solmone, M.3    Prosperi, M.4    Bruselles, A.5    Abbate, I.6
  • 9
    • 59649083962 scopus 로고    scopus 로고
    • Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen
    • Solmone M., Vincenti D., Prosperi M.C., Bruselles A., Ippolito G., Capobianchi M.R. Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen. J Virol 2009, 83:1718-1726.
    • (2009) J Virol , vol.83 , pp. 1718-1726
    • Solmone, M.1    Vincenti, D.2    Prosperi, M.C.3    Bruselles, A.4    Ippolito, G.5    Capobianchi, M.R.6
  • 10
    • 65649130002 scopus 로고    scopus 로고
    • Ultra-deep pyrosequencing of hepatitis b virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (nrti)-treated patients and nrti-naive patients
    • Margeridon-Thermet S., Shulman N.S., Ahmed A., Shahriar R., Liu T., Wang C., et al. Ultra-deep pyrosequencing of hepatitis b virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (nrti)-treated patients and nrti-naive patients. J Infect Dis 2009, 199:1275-1285.
    • (2009) J Infect Dis , vol.199 , pp. 1275-1285
    • Margeridon-Thermet, S.1    Shulman, N.S.2    Ahmed, A.3    Shahriar, R.4    Liu, T.5    Wang, C.6
  • 12
    • 80455168369 scopus 로고    scopus 로고
    • Ultra-deep pyrosequencing analysis of the hepatitis b virus precore region and main catalytic motif of the viral polymerase in the same viral genome
    • Homs M., Buti M., Quer J., Jardí R., Schaper M., Tabernero D., et al. Ultra-deep pyrosequencing analysis of the hepatitis b virus precore region and main catalytic motif of the viral polymerase in the same viral genome. Nucleic Acids Res 2011, 39:8457-8471.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8457-8471
    • Homs, M.1    Buti, M.2    Quer, J.3    Jardí, R.4    Schaper, M.5    Tabernero, D.6
  • 13
    • 84885842445 scopus 로고    scopus 로고
    • The guideline of prevention and treatment for chronic hepatitis B (2010 version)
    • [Chinese]
    • Chinese Society of Hepatology and Chinese Society of Infectious Diseases, Chinese Medical Association The guideline of prevention and treatment for chronic hepatitis B (2010 version). Zhonghua Liu Xing Bing Xue Za Zhi 2011, 32:405-415. [Chinese].
    • (2011) Zhonghua Liu Xing Bing Xue Za Zhi , vol.32 , pp. 405-415
  • 14
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M., Walker J.J., Harris J.K., Gold N.J., Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 2008, 5:235-237.
    • (2008) Nat Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 15
    • 84878734899 scopus 로고    scopus 로고
    • Whole genome HBV deletion profiles and the accumulation of pres deletion mutant during antiviral treatment
    • Zhang D., Dong P., Zhang K., Deng L., Bach C., Chen W., et al. Whole genome HBV deletion profiles and the accumulation of pres deletion mutant during antiviral treatment. BMC Microbiol 2012, 12:307.
    • (2012) BMC Microbiol , vol.12 , pp. 307
    • Zhang, D.1    Dong, P.2    Zhang, K.3    Deng, L.4    Bach, C.5    Chen, W.6
  • 16
    • 77958029160 scopus 로고    scopus 로고
    • Comparison study on the complete sequence of hepatitis b virus identifies new mutations in core gene associated with hepatocellular carcinoma
    • Zhu Y., Jin Y., Guo X., Bai X., Chen T., Wang J., et al. Comparison study on the complete sequence of hepatitis b virus identifies new mutations in core gene associated with hepatocellular carcinoma. Cancer Epidemiol Biomarkers Prev 2010, 19:2623-2630.
    • (2010) Cancer Epidemiol Biomarkers Prev , vol.19 , pp. 2623-2630
    • Zhu, Y.1    Jin, Y.2    Guo, X.3    Bai, X.4    Chen, T.5    Wang, J.6
  • 17
    • 78650981205 scopus 로고    scopus 로고
    • Association between the various mutations in viral core promoter region to different stages of hepatitis b, ranging of asymptomatic carrier state to hepatocellular carcinoma
    • Yin J., Xie J., Liu S., Zhang H., Han L., Lu W., et al. Association between the various mutations in viral core promoter region to different stages of hepatitis b, ranging of asymptomatic carrier state to hepatocellular carcinoma. Am J Gastroenterol 2011, 106:81-92.
    • (2011) Am J Gastroenterol , vol.106 , pp. 81-92
    • Yin, J.1    Xie, J.2    Liu, S.3    Zhang, H.4    Han, L.5    Lu, W.6
  • 18
    • 79960649009 scopus 로고    scopus 로고
    • The g1613a mutation in the hbv genome affects hbeag expression and viral replication through altered core promoter activity
    • Li M.S., Lau T.C., Chan S.K., Wong C.H., Ng P.K., Sung J.J., et al. The g1613a mutation in the hbv genome affects hbeag expression and viral replication through altered core promoter activity. PLoS One 2011, 6:e21856.
    • (2011) PLoS One , vol.6 , pp. e21856
    • Li, M.S.1    Lau, T.C.2    Chan, S.K.3    Wong, C.H.4    Ng, P.K.5    Sung, J.J.6
  • 19
    • 35548930633 scopus 로고    scopus 로고
    • Analysis of the complete hepatitis b virus genome in patients with genotype c chronic hepatitis and hepatocellular carcinoma
    • Zhang K.Y., Imazeki F., Fukai K., Arai M., Kanda T., Mikata R., et al. Analysis of the complete hepatitis b virus genome in patients with genotype c chronic hepatitis and hepatocellular carcinoma. Cancer Sci 2007, 98:1921-1929.
    • (2007) Cancer Sci , vol.98 , pp. 1921-1929
    • Zhang, K.Y.1    Imazeki, F.2    Fukai, K.3    Arai, M.4    Kanda, T.5    Mikata, R.6
  • 20
    • 67650682133 scopus 로고    scopus 로고
    • Low-abundance hiv drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use
    • Le T., Chiarella J., Simen B.B., Hanczaruk B., Egholm M., Landry M.L., et al. Low-abundance hiv drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use. PLoS One 2009, 4:e6079.
    • (2009) PLoS One , vol.4 , pp. e6079
    • Le, T.1    Chiarella, J.2    Simen, B.B.3    Hanczaruk, B.4    Egholm, M.5    Landry, M.L.6
  • 21
    • 0028834764 scopus 로고
    • Core antigen mutations of human hepatitis b virus in hepatomas accumulate in mhc class ii-restricted t cell epitopes
    • Hosono S., Tai P.C., Wang W., Ambrose M., Hwang D.G., Yuan T.T., et al. Core antigen mutations of human hepatitis b virus in hepatomas accumulate in mhc class ii-restricted t cell epitopes. Virology 1995, 212:151-162.
    • (1995) Virology , vol.212 , pp. 151-162
    • Hosono, S.1    Tai, P.C.2    Wang, W.3    Ambrose, M.4    Hwang, D.G.5    Yuan, T.T.6
  • 22
    • 42149139574 scopus 로고    scopus 로고
    • A systematic review of t-cell epitopes in hepatitis B virus: identification, genotypic variation and relevance to antiviral therapeutics
    • Desmond C.P., Bartholomeusz A., Gaudieri S., Revill P.A., Lewin S.R. A systematic review of t-cell epitopes in hepatitis B virus: identification, genotypic variation and relevance to antiviral therapeutics. Antivir Ther 2008, 13:161-175.
    • (2008) Antivir Ther , vol.13 , pp. 161-175
    • Desmond, C.P.1    Bartholomeusz, A.2    Gaudieri, S.3    Revill, P.A.4    Lewin, S.R.5
  • 23
    • 0024500103 scopus 로고
    • Antigenic determinants and functional domains in core antigen and e antigen from hepatitis B virus
    • Salfeld J., Pfaff E., Noah M., Schaller H. Antigenic determinants and functional domains in core antigen and e antigen from hepatitis B virus. J Virol 1989, 63:798-808.
    • (1989) J Virol , vol.63 , pp. 798-808
    • Salfeld, J.1    Pfaff, E.2    Noah, M.3    Schaller, H.4
  • 24
    • 0033152857 scopus 로고    scopus 로고
    • The crystal structure of the human hepatitis B virus capsid
    • Wynne S.A., Crowther R.A., Leslie A.G. The crystal structure of the human hepatitis B virus capsid. Mol Cell 1999, 3:771-780.
    • (1999) Mol Cell , vol.3 , pp. 771-780
    • Wynne, S.A.1    Crowther, R.A.2    Leslie, A.G.3
  • 25
    • 0023037176 scopus 로고
    • Expression of hepatitis b virus large envelope polypeptide inhibits hepatitis B surface antigen secretion in transgenic mice
    • Chisari F.V., Filippi P., McLachlan A., Milich D.R., Riggs M., Lee S., et al. Expression of hepatitis b virus large envelope polypeptide inhibits hepatitis B surface antigen secretion in transgenic mice. J Virol 1986, 60:880-887.
    • (1986) J Virol , vol.60 , pp. 880-887
    • Chisari, F.V.1    Filippi, P.2    McLachlan, A.3    Milich, D.R.4    Riggs, M.5    Lee, S.6
  • 26
    • 78650041795 scopus 로고    scopus 로고
    • Novel f141l pre-s2 mutation in hepatitis B virus increases the risk of hepatocellular carcinoma in patients with chronic genotype c infections
    • Mun H.S., Lee S.A., Kim H., Hwang E.S., Kook Y.H., Kim B.J. Novel f141l pre-s2 mutation in hepatitis B virus increases the risk of hepatocellular carcinoma in patients with chronic genotype c infections. J Virol 2011, 85:123-132.
    • (2011) J Virol , vol.85 , pp. 123-132
    • Mun, H.S.1    Lee, S.A.2    Kim, H.3    Hwang, E.S.4    Kook, Y.H.5    Kim, B.J.6
  • 27
    • 0011014310 scopus 로고    scopus 로고
    • A defective interference-like phenomenon of human hepatitis B virus in chronic carriers
    • Yuan T.T., Lin M.H., Chen D.S., Shih C. A defective interference-like phenomenon of human hepatitis B virus in chronic carriers. J Virol 1998, 72:578-584.
    • (1998) J Virol , vol.72 , pp. 578-584
    • Yuan, T.T.1    Lin, M.H.2    Chen, D.S.3    Shih, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.