메뉴 건너뛰기




Volumn 26, Issue 23, 2010, Pages 2929-2932

A classification model for G-to-A hypermutation in hepatitis B virus ultra-deep pyrosequencing reads

Author keywords

[No Author keywords available]

Indexed keywords

HEPATITIS B VIRUS;

EID: 78449313051     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq570     Document Type: Article
Times cited : (16)

References (21)
  • 1
    • 31144469701 scopus 로고    scopus 로고
    • Role and mechanism of action of the APOBEC3 family of antiretroviral resistance factors
    • Cullen, B.R. (2006) Role and mechanism of action of the APOBEC3 family of antiretroviral resistance factors. J. Virol., 80, 1067-1076.
    • (2006) J. Virol. , vol.80 , pp. 1067-1076
    • Cullen, B.R.1
  • 2
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster, A.P. et al. (1977) Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. Series B Methodol., 39, 1-38.
    • (1977) J. R. Stat. Soc. Series B Methodol. , vol.39 , pp. 1-38
    • Dempster, A.P.1
  • 3
    • 0036102294 scopus 로고    scopus 로고
    • A revised evolutionary history of hepatitis B virus (HBV)
    • Fares, M.A. and Holmes, E.C. (2002) A revised evolutionary history of hepatitis B virus (HBV). J. Mol. Evol., 54, 807-814.
    • (2002) J. Mol. Evol. , vol.54 , pp. 807-814
    • Fares, M.A.1    Holmes, E.C.2
  • 4
    • 41349120548 scopus 로고    scopus 로고
    • Sequence editing by Apolipoprotein B RNA-editing catalytic component and epidemiological surveillance of transmitted HIV-1 drug resistance
    • Gifford, R.J. et al. (2008) Sequence editing by Apolipoprotein B RNA-editing catalytic component and epidemiological surveillance of transmitted HIV-1 drug resistance. AIDS, 22, 717-725.
    • (2008) AIDS , vol.22 , pp. 717-725
    • Gifford, R.J.1
  • 5
    • 59249086363 scopus 로고    scopus 로고
    • Genetic editing of HBVDNAby monodomain humanAPOBEC3 cytidine deaminases and the recombinant nature of APOBEC3G
    • Henry, M. et al. (2009) Genetic editing of HBVDNAby monodomain humanAPOBEC3 cytidine deaminases and the recombinant nature of APOBEC3G. PLoS ONE, 4, e4277.
    • (2009) PLoS ONE , vol.4
    • Henry, M.1
  • 6
    • 34247857484 scopus 로고    scopus 로고
    • HyperPack: a software package for the study of levels, contexts, and patterns of APOBEC-mediated hypermutation in HIV
    • Kijak, G.H. et al. (2007) HyperPack: a software package for the study of levels, contexts, and patterns of APOBEC-mediated hypermutation in HIV. AIDS Res. Hum. Retroviruses, 23, 554-557.
    • (2007) AIDS Res. Hum. Retroviruses , vol.23 , pp. 554-557
    • Kijak, G.H.1
  • 7
    • 44649185201 scopus 로고    scopus 로고
    • Hypermutation of hepatitis B virus genomes by APOBEC3G APOBEC3C and APOBEC3H
    • Kock, J. and Blum, H.E. (2008) Hypermutation of hepatitis B virus genomes by APOBEC3G, APOBEC3C and APOBEC3H. J. Gen. Virol., 89, 1184-1191.
    • (2008) J. Gen. Virol. , vol.89 , pp. 1184-1191
    • Kock, J.1    Blum, H.E.2
  • 8
    • 38049091002 scopus 로고    scopus 로고
    • Major causes of antiviral drug resistance and implications for treatment of hepatitis B virus monoinfection and coinfection with HIV
    • Locarnini, S. and Warner, N. (2007) Major causes of antiviral drug resistance and implications for treatment of hepatitis B virus monoinfection and coinfection with HIV. Antivir. Ther., 12(Suppl. 3), H15-H23.
    • (2007) Antivir. Ther. , vol.12 , Issue.SUPPL. 3
    • Locarnini, S.1    Warner, N.2
  • 9
    • 34547425435 scopus 로고    scopus 로고
    • Antiviral drug-resistant HBV: standardization of nomenclature and assays and recommendations for management
    • Lok, A.S. et al. (2007) Antiviral drug-resistant HBV: standardization of nomenclature and assays and recommendations for management. Hepatology, 46, 254-265.
    • (2007) Hepatology , vol.46 , pp. 254-265
    • Lok, A.S.1
  • 10
    • 65649130002 scopus 로고    scopus 로고
    • Ultra-deep pyrosequencing of hepatitis B virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (NRTI)-treated patients and NRTI-naive patients
    • Margeridon-Thermet, S. et al. (2009) Ultra-deep pyrosequencing of hepatitis B virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (NRTI)-treated patients and NRTI-naive patients. J. Infect. Dis., 199, 1275-1285.
    • (2009) J. Infect. Dis. , vol.199 , pp. 1275-1285
    • Margeridon-Thermet, S.1
  • 11
    • 14244254668 scopus 로고    scopus 로고
    • G to A hypermutation of hepatitis B virus
    • Noguchi, C. et al. (2005) G to A hypermutation of hepatitis B virus. Hepatology, 41, 626-633.
    • (2005) Hepatology , vol.41 , pp. 626-633
    • Noguchi, C.1
  • 12
    • 0032837442 scopus 로고    scopus 로고
    • Hepatitis B virus genomes from long-term immunosuppressed virus carriers are modified by specific mutations in several regions
    • Preikschat, P. et al. (1999) Hepatitis B virus genomes from long-term immunosuppressed virus carriers are modified by specific mutations in several regions. J. Gen. Virol., 80 (Pt 10), 2685-2691.
    • (1999) J. Gen. Virol. , vol.80 , Issue.PT 10 , pp. 2685-2691
    • Preikschat, P.1
  • 14
    • 0034124124 scopus 로고    scopus 로고
    • Detecting hypermutations in viral sequences with an emphasis on G -> A hypermutation
    • Rose, P.P. and Korber, B.T. (2000) Detecting hypermutations in viral sequences with an emphasis on G -> A hypermutation. Bioinformatics, 16, 400-401.
    • (2000) Bioinformatics , vol.16 , pp. 400-401
    • Rose, P.P.1    Korber, B.T.2
  • 15
    • 3142681466 scopus 로고    scopus 로고
    • Aweb-based genotyping resource for viral sequences
    • Rozanov, M. et al. (2004)Aweb-based genotyping resource for viral sequences. Nucleic Acids Res., 32, W654-W659.
    • (2004) Nucleic Acids Res , vol.32
    • Rozanov, M.1
  • 16
    • 0037043699 scopus 로고    scopus 로고
    • Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
    • Sheehy, A.M. et al. (2002) Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature, 418, 646-650.
    • (2002) Nature , vol.418 , pp. 646-650
    • Sheehy, A.M.1
  • 17
    • 59649083962 scopus 로고    scopus 로고
    • Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drugnaive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen
    • Solmone, M. et al. (2009) Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drugnaive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen. J. Virol., 83, 1718-1726.
    • (2009) J. Virol. , vol.83 , pp. 1718-1726
    • Solmone, M.1
  • 18
    • 20444416733 scopus 로고    scopus 로고
    • Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo
    • Suspène, R. et al. (2005) Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo. Proc. Natl Acad. Sci. USA, [102] 8321-8326.
    • (2005) Proc. Natl Acad. Sci. USA , Issue.102 , pp. 8321-8326
    • Suspène, R.1
  • 19
    • 77956204474 scopus 로고    scopus 로고
    • Nucleic acid template and the risk of a PCR-Induced HIV-1 drug resistance mutation
    • Varghese, V. et al. (2010) Nucleic acid template and the risk of a PCR-Induced HIV-1 drug resistance mutation. PLoS ONE, 5, e10992.
    • (2010) PLoS ONE , vol.5
    • Varghese, V.1
  • 20
    • 77956667520 scopus 로고    scopus 로고
    • Covering all bases in HIV research: unveiling a hidden world of viral evolution
    • Vrancken, B. et al. (2010) Covering all bases in HIV research: unveiling a hidden world of viral evolution. AIDS Rev., 12, 89-102.
    • (2010) AIDS Rev , vol.12 , pp. 89-102
    • Vrancken, B.1
  • 21
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance
    • Wang, C. et al. (2007) Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res., 17, 1195-1201.
    • (2007) Genome Res , vol.17 , pp. 1195-1201
    • Wang, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.