메뉴 건너뛰기




Volumn 194, Issue 12, 2015, Pages 6155-6163

Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers

Author keywords

[No Author keywords available]

Indexed keywords

B LYMPHOCYTE RECEPTOR; LYMPHOCYTE ANTIGEN RECEPTOR; T LYMPHOCYTE RECEPTOR; COMPLEMENTARY DNA;

EID: 84931446384     PISSN: 00221767     EISSN: 15506606     Source Type: Journal    
DOI: 10.4049/jimmunol.1500215     Document Type: Article
Times cited : (77)

References (50)
  • 2
    • 70349648171 scopus 로고    scopus 로고
    • Profiling the T-cell receptor β-chain repertoire by massively parallel sequencing
    • Freeman, J. D., R. L. Warren, J. R. Webb, B. H. Nelson, and R. A. Holt. 2009. Profiling the T-cell receptor β-chain repertoire by massively parallel sequencing. Genome Res. 19: 1817-1824.
    • (2009) Genome Res. , vol.19 , pp. 1817-1824
    • Freeman, J.D.1    Warren, R.L.2    Webb, J.R.3    Nelson, B.H.4    Holt, R.A.5
  • 4
    • 79955554975 scopus 로고    scopus 로고
    • Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
    • Warren, R. L., J. D. Freeman, T. Zeng, G. Choe, S. Munro, R. Moore, J. R. Webb, and R. A. Holt. 2011. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res. 21: 790-797.
    • (2011) Genome Res. , vol.21 , pp. 790-797
    • Warren, R.L.1    Freeman, J.D.2    Zeng, T.3    Choe, G.4    Munro, S.5    Moore, R.6    Webb, J.R.7    Holt, R.A.8
  • 8
    • 84903436924 scopus 로고    scopus 로고
    • Antibody repertoire deep sequencing reveals antigen-independent selection in maturing B cells
    • Kaplinsky, J., A. Li, A. Sun, M. Coffre, S. B. Koralov, and R. Arnaout. 2014. Antibody repertoire deep sequencing reveals antigen-independent selection in maturing B cells. Proc. Natl. Acad. Sci. USA 111: E2622-E2629.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E2622-E2629
    • Kaplinsky, J.1    Li, A.2    Sun, A.3    Coffre, M.4    Koralov, S.B.5    Arnaout, R.6
  • 12
    • 84865437075 scopus 로고    scopus 로고
    • Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes
    • Li, H., C. Ye, G. Ji, X. Wu, Z. Xiang, Y. Li, Y. Cao, X. Liu, D. C. Douek, D. A. Price, and J. Han. 2012. Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes. J. Immunol. 189: 2404-2413.
    • (2012) J. Immunol. , vol.189 , pp. 2404-2413
    • Li, H.1    Ye, C.2    Ji, G.3    Wu, X.4    Xiang, Z.5    Li, Y.6    Cao, Y.7    Liu, X.8    Douek, D.C.9    Price, D.A.10    Han, J.11
  • 15
    • 84867095375 scopus 로고    scopus 로고
    • Statistical inference of the generation probability of T-cell receptors from sequence repertoires
    • Murugan, A., T. Mora, A. M. Walczak, and C. G. Callan, Jr. 2012. Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proc. Natl. Acad. Sci. USA 109: 16161-16166.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 16161-16166
    • Murugan, A.1    Mora, T.2    Walczak, A.M.3    Callan, C.G.4
  • 20
    • 84888339051 scopus 로고    scopus 로고
    • A novel approach to tracking antigenexperienced CD4 T cells into functional compartments via tandem deep and shallow TCR clonotyping
    • Estorninho, M., V. B. Gibson, D. Kronenberg-Versteeg, Y. F. Liu, C. Ni, K. Cerosaletti, and M. Peakman. 2013. A novel approach to tracking antigenexperienced CD4 T cells into functional compartments via tandem deep and shallow TCR clonotyping. J. Immunol. 191: 5430-5440.
    • (2013) J. Immunol. , vol.191 , pp. 5430-5440
    • Estorninho, M.1    Gibson, V.B.2    Kronenberg-Versteeg, D.3    Liu, Y.F.4    Ni, C.5    Cerosaletti, K.6    Peakman, M.7
  • 21
    • 84883398025 scopus 로고    scopus 로고
    • Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians
    • Edholm, E. S., L. M. Albertorio Saez, A. L. Gill, S. R. Gill, L. Grayfer, N. Haynes, J. R. Myers, and J. Robert. 2013. Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians. Proc. Natl. Acad. Sci. USA 110: 14342-14347.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 14342-14347
    • Edholm, E.S.1    Albertorio Saez, L.M.2    Gill, A.L.3    Gill, S.R.4    Grayfer, L.5    Haynes, N.6    Myers, J.R.7    Robert, J.8
  • 22
    • 84871921179 scopus 로고    scopus 로고
    • NKT and MAIT invariant TCRα sequences can be produced efficiently by VJ gene recombination
    • Greenaway, H. Y., B. Ng, D. A. Price, D. C. Douek, M. P. Davenport, and V. Venturi. 2013. NKT and MAIT invariant TCRα sequences can be produced efficiently by VJ gene recombination. Immunobiology 218: 213-224.
    • (2013) Immunobiology , vol.218 , pp. 213-224
    • Greenaway, H.Y.1    Ng, B.2    Price, D.A.3    Douek, D.C.4    Davenport, M.P.5    Venturi, V.6
  • 27
    • 79751526431 scopus 로고    scopus 로고
    • Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire
    • Nguyen, P., J. Ma, D. Pei, C. Obert, C. Cheng, and T. L. Geiger. 2011. Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire. BMC Genomics 12: 106.
    • (2011) BMC Genomics , vol.12 , pp. 106
    • Nguyen, P.1    Ma, J.2    Pei, D.3    Obert, C.4    Cheng, C.5    Geiger, T.L.6
  • 32
    • 0037087319 scopus 로고    scopus 로고
    • A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape
    • Douek, D. C., M. R. Betts, J. M. Brenchley, B. J. Hill, D. R. Ambrozak, K. L. Ngai, N. J. Karandikar, J. P. Casazza, and R. A. Koup. 2002. A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape. J. Immunol. 168: 3099-3104.
    • (2002) J. Immunol. , vol.168 , pp. 3099-3104
    • Douek, D.C.1    Betts, M.R.2    Brenchley, J.M.3    Hill, B.J.4    Ambrozak, D.R.5    Ngai, K.L.6    Karandikar, N.J.7    Casazza, J.P.8    Koup, R.A.9
  • 40
    • 79960226263 scopus 로고    scopus 로고
    • A method for counting PCR template molecules with application to next-generation sequencing
    • Casbon, J. A., R. J. Osborne, S. Brenner, and C. P. Lichtenstein. 2011. A method for counting PCR template molecules with application to next-generation sequencing. Nucleic Acids Res. 39: e81.
    • (2011) Nucleic Acids Res. , vol.39 , pp. e81
    • Casbon, J.A.1    Osborne, R.J.2    Brenner, S.3    Lichtenstein, C.P.4
  • 41
    • 84901831004 scopus 로고    scopus 로고
    • Validation of noise models for single-cell transcriptomics
    • Grün, D., L. Kester, and A. van Oudenaarden. 2014. Validation of noise models for single-cell transcriptomics. Nat. Methods 11: 637-640.
    • (2014) Nat. Methods , vol.11 , pp. 637-640
    • Grün, D.1    Kester, L.2    Van Oudenaarden, A.3
  • 48
    • 84961289824 scopus 로고    scopus 로고
    • Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding
    • He, L., D. Sok, P. Azadnia, J. Hsueh, E. Landais, M. Simek, W. C. Koff, P. Poignard, D. R. Burton, and J. Zhu. 2014. Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding. Sci. Rep. 4: 6778. doi:10.1038/srep06778
    • (2014) Sci. Rep. , vol.4 , pp. 6778
    • He, L.1    Sok, D.2    Azadnia, P.3    Hsueh, J.4    Landais, E.5    Simek, M.6    Koff, W.C.7    Poignard, P.8    Burton, D.R.9    Zhu, J.10
  • 49
    • 84893833939 scopus 로고    scopus 로고
    • Beyond model antigens: High-dimensional methods for the analysis of antigen-specific T cells
    • Newell, E. W., and M. M. Davis. 2014. Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells. Nat. Biotechnol. 32: 149-157.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 149-157
    • Newell, E.W.1    Davis, M.M.2
  • 50
    • 84903993800 scopus 로고    scopus 로고
    • Linking T-cell receptor sequence to functional phenotype at the single-cell level
    • Han, A., J. Glanville, L. Hansmann, and M. M. Davis. 2014. Linking T-cell receptor sequence to functional phenotype at the single-cell level. Nat. Biotechnol. 32: 684-692.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 684-692
    • Han, A.1    Glanville, J.2    Hansmann, L.3    Davis, M.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.