메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea

Author keywords

[No Author keywords available]

Indexed keywords

CICER; GENE LINKAGE DISEQUILIBRIUM; GENETICS; PHYLOGENY; PLANT GENOME; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84931282161     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep11166     Document Type: Article
Times cited : (75)

References (100)
  • 1
    • 0036444884 scopus 로고    scopus 로고
    • Mapping genes for double podding and other morphological traits in chickpea
    • Cho, S. et al. Mapping genes for double podding and other morphological traits in chickpea. Euphytica 125, 285-292 (2002).
    • (2002) Euphytica , vol.125 , pp. 285-292
    • Cho, S.1
  • 2
    • 0042203714 scopus 로고    scopus 로고
    • DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Rakshit, S. et al. DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.). Euphytica 132, 23-30 (2003).
    • (2003) Euphytica , vol.132 , pp. 23-30
    • Rakshit, S.1
  • 3
    • 84925456875 scopus 로고    scopus 로고
    • A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profling identifed a seed weight-regulating candidate gene in chickpea
    • Bajaj, D. et al. A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profling identifed a seed weight-regulating candidate gene in chickpea. Sci. Rep. 5, 9264; DOI:10.1038/srep09264 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 9264
    • Bajaj, D.1
  • 4
    • 2442555212 scopus 로고    scopus 로고
    • Molecular mapping of Fusarium oxysporum F. Sp. Ciceris race 3 resistance gene in chickpea
    • Sharma, K. D., Winter, P., Kahl, G. & Muehlbauer, F. J. Molecular mapping of Fusarium oxysporum f. sp. ciceris race 3 resistance gene in chickpea. Teor. Appl. Genet. 108, 1243-1248 (2004).
    • (2004) Teor. Appl. Genet. , vol.108 , pp. 1243-1248
    • Sharma, K.D.1    Winter, P.2    Kahl, G.3    Muehlbauer, F.J.4
  • 5
    • 15244347337 scopus 로고    scopus 로고
    • Genetics of chickpea resistance to fve races of Fusarium wilt and a concise set of race diferentials for Fusarium oxysporum F. Sp. Ciceris
    • Sharma, K. D., Chen, W. & Muehlbauer, F. J. Genetics of chickpea resistance to fve races of Fusarium wilt and a concise set of race diferentials for Fusarium oxysporum f.sp. ciceris. Plant Dis. 89, 385-390 (2005).
    • (2005) Plant Dis. , vol.89 , pp. 385-390
    • Sharma, K.D.1    Chen, W.2    Muehlbauer, F.J.3
  • 6
    • 18844428094 scopus 로고    scopus 로고
    • Linkage map of chickpea (Cicer arietinum L.) based on populations from kabuli x desi crosses: Location of genes for resistance to Fusarium wilt race 0
    • Cobos, M. J. et al. Linkage map of chickpea (Cicer arietinum L.) based on populations from kabuli x desi crosses: Location of genes for resistance to Fusarium wilt race 0. Teor. Appl. Genet. 110, 1347-1353 (2005).
    • (2005) Teor. Appl. Genet. , vol.110 , pp. 1347-1353
    • Cobos, M.J.1
  • 7
    • 33745714430 scopus 로고    scopus 로고
    • A new QTL for Ascochyta blight resistance in an RIL population derived from an interspecifc cross in chickpea
    • Cobos, M. et al. A new QTL for Ascochyta blight resistance in an RIL population derived from an interspecifc cross in chickpea. Euphytica 149, 105-111 (2006).
    • (2006) Euphytica , vol.149 , pp. 105-111
    • Cobos, M.1
  • 8
    • 58749090349 scopus 로고    scopus 로고
    • Genetic analysis of agronomic traits in a wide cross of chickpea
    • Cobos, M. J. et al. Genetic analysis of agronomic traits in a wide cross of chickpea. Field Crops Res. 111, 130-136 (2009).
    • (2009) Field Crops Res. , vol.111 , pp. 130-136
    • Cobos, M.J.1
  • 9
    • 29144453461 scopus 로고    scopus 로고
    • Detection of two quantitative trait loci for resistance to Ascochyta blight in an intra-specifc cross of chickpea (Cicer arietinum L.): Development of SCAR markers associated with resistance
    • Iruela, M. et al. Detection of two quantitative trait loci for resistance to Ascochyta blight in an intra-specifc cross of chickpea (Cicer arietinum L.): development of SCAR markers associated with resistance. Teor. Appl. Genet. 112, 278-287 (2006).
    • (2006) Teor. Appl. Genet. , vol.112 , pp. 278-287
    • Iruela, M.1
  • 10
    • 34548461241 scopus 로고    scopus 로고
    • Validation of a QTL for resistance to Ascochyta blight linked to resistance to Fusarium wilt race 5 in chickpea (Cicer arietinum L.)
    • Iruela, M. et al. Validation of a QTL for resistance to Ascochyta blight linked to resistance to Fusarium wilt race 5 in chickpea (Cicer arietinum L.). Eur. J. Plant. Pathol. 119, 29-37 (2007).
    • (2007) Eur. J. Plant. Pathol. , vol.119 , pp. 29-37
    • Iruela, M.1
  • 11
    • 58149216281 scopus 로고    scopus 로고
    • Te marker SCK13603 associated with resistance to Ascochyta blight in chickpea is located in a region of a putative retrotransposon
    • Iruela, M. et al. Te marker SCK13603 associated with resistance to Ascochyta blight in chickpea is located in a region of a putative retrotransposon. Plant Cell Rep. 28, 53-60 (2009).
    • (2009) Plant Cell Rep. , vol.28 , pp. 53-60
    • Iruela, M.1
  • 12
    • 33750036374 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in chickpea associated with time to fowering and resistance to Didymella rabiei the causal agent of Ascochyta blight
    • Lichtenzveig, J., Bonfl, D. J., Zhang, H. B., Shtienberg, D. & Abbo, S. Mapping quantitative trait loci in chickpea associated with time to fowering and resistance to Didymella rabiei the causal agent of Ascochyta blight. Teor. Appl. Genet. 113, 1357-1369 (2006).
    • (2006) Teor. Appl. Genet. , vol.113 , pp. 1357-1369
    • Lichtenzveig, J.1    Bonfl, D.J.2    Zhang, H.B.3    Shtienberg, D.4    Abbo, S.5
  • 13
    • 34347349067 scopus 로고    scopus 로고
    • Development of an integrated intraspecifc map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations
    • Radhika, P. et al. Development of an integrated intraspecifc map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations. Teor. Appl. Genet. 115, 209-216 (2007).
    • (2007) Teor. Appl. Genet. , vol.115 , pp. 209-216
    • Radhika, P.1
  • 14
    • 34249983936 scopus 로고    scopus 로고
    • Genetic mapping of Ascochyta blight resistance in chickpea (Cicer arietinum) using a simple sequence repeat linkage map
    • Taràn, B., Warkentin, T. D., Tullu, A. & Vanderberg, A. Genetic mapping of Ascochyta blight resistance in chickpea (Cicer arietinum) using a simple sequence repeat linkage map. Genome 50, 26-34 (2007).
    • (2007) Genome , vol.50 , pp. 26-34
    • Taràn, B.1    Warkentin, T.D.2    Tullu, A.3    Vanderberg, A.4
  • 15
    • 41549165277 scopus 로고    scopus 로고
    • Mechanism and molecular markers associated with rust resistance in a chickpea interspecifc cross (Cicer arietinum× Cicer reticulatum)
    • Madrid, E. et al. Mechanism and molecular markers associated with rust resistance in a chickpea interspecifc cross (Cicer arietinum× Cicer reticulatum). Eur. J. Plant. Pathol. 121, 43-53 (2008).
    • (2008) Eur. J. Plant. Pathol. , vol.121 , pp. 43-53
    • Madrid, E.1
  • 16
    • 68349125552 scopus 로고    scopus 로고
    • Genetic analyses and conservation of QTL for Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Anbessa, Y., Taran, B., Warkentin, T. D., Tullu, A. & Vandenberg, A. Genetic analyses and conservation of QTL for Ascochyta blight resistance in chickpea (Cicer arietinum L.). Teor. Appl. Genet. 119, 757-765 (2009).
    • (2009) Teor. Appl. Genet. , vol.119 , pp. 757-765
    • Anbessa, Y.1    Taran, B.2    Warkentin, T.D.3    Tullu, A.4    Vandenberg, A.5
  • 18
    • 78650433989 scopus 로고    scopus 로고
    • Identifcation of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement
    • Gowda, C. L. L., Upadhyaya, H. D., Dronavalli, N. & Singh, S. Identifcation of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement. Crop Sci. 5, 198-209 (2011).
    • (2011) Crop Sci. , vol.5 , pp. 198-209
    • Gowda, C.L.L.1    Upadhyaya, H.D.2    Dronavalli, N.3    Singh, S.4
  • 19
    • 77953326729 scopus 로고    scopus 로고
    • Mapping a major gene for growth habit and QTLs for Ascochyta blight resistance and fowering time in a population between chickpea and Cicer reticulatum
    • Aryamanesh, N., Nelson, M. N., Yan, G., Clarke, H. J. & Siddique, K. H. M. Mapping a major gene for growth habit and QTLs for Ascochyta blight resistance and fowering time in a population between chickpea and Cicer reticulatum. Euphytica 173, 307-319 (2010).
    • (2010) Euphytica , vol.173 , pp. 307-319
    • Aryamanesh, N.1    Nelson, M.N.2    Yan, G.3    Clarke, H.J.4    Siddique, K.H.M.5
  • 20
    • 79951855458 scopus 로고    scopus 로고
    • Mapping QTL for resistance to Botrytis grey mould in chickpea
    • Anuradha, C. et al. Mapping QTL for resistance to Botrytis grey mould in chickpea. Euphytica 182, 1-9 (2011).
    • (2011) Euphytica , vol.182 , pp. 1-9
    • Anuradha, C.1
  • 21
    • 79957887475 scopus 로고    scopus 로고
    • Towards marker-assisted selection in pulses: A review
    • Kumar, A., Choudhary, A. K., Solanki, R. K. & Pratap, A. Towards marker-assisted selection in pulses: a review. Plant Breed. 130, 297-313 (2011).
    • (2011) Plant Breed. , vol.130 , pp. 297-313
    • Kumar, A.1    Choudhary, A.K.2    Solanki, R.K.3    Pratap, A.4
  • 22
    • 79952475775 scopus 로고    scopus 로고
    • Mapping QTL associated with traits afecting grain yield in chickpea (Cicer arietinum L.) under terminal drought stress
    • Rehman, A. U. et al. Mapping QTL associated with traits afecting grain yield in chickpea (Cicer arietinum L.) under terminal drought stress. Crop Sci. 51, 450-463 (2011).
    • (2011) Crop Sci. , vol.51 , pp. 450-463
    • Rehman, A.U.1
  • 23
    • 84861738658 scopus 로고    scopus 로고
    • Assessment of ICCV2 x JG62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components
    • Vadez, V. et al. Assessment of ICCV2 x JG62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Mol. Breed. 30, 9-21 (2012).
    • (2012) Mol. Breed. , vol.30 , pp. 9-21
    • Vadez, V.1
  • 24
    • 84884190218 scopus 로고    scopus 로고
    • Functionally relevant microsatellite markers from chickpea transcription factor genes for efcient genotyping applications and trait association mapping
    • Kujur, A. et al. Functionally relevant microsatellite markers from chickpea transcription factor genes for efcient genotyping applications and trait association mapping. DNA Res. 20, 355-374 (2013).
    • (2013) DNA Res. , vol.20 , pp. 355-374
    • Kujur, A.1
  • 25
    • 84881554353 scopus 로고    scopus 로고
    • Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)
    • Sabbavarapu, M. M. et al. Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica 193, 121-133 (2013).
    • (2013) Euphytica , vol.193 , pp. 121-133
    • Sabbavarapu, M.M.1
  • 26
    • 84922450139 scopus 로고    scopus 로고
    • An Integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea
    • Saxena, M. S. et al. An Integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea. DNA Res. 21, 695-710 (2014a).
    • (2014) DNA Res. , vol.21 , pp. 695-710
    • Saxena, M.S.1
  • 27
    • 84890872120 scopus 로고    scopus 로고
    • Genetic marker discovery, intraspecifc linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Stephens, A. et al. Genetic marker discovery, intraspecifc linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.). Mol. Breed. 33, 297-313 (2014).
    • (2014) Mol. Breed. , vol.33 , pp. 297-313
    • Stephens, A.1
  • 28
    • 84887989292 scopus 로고    scopus 로고
    • Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
    • Varshney, R. K. et al. Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnol. Adv. 31, 1120-1134 (2013a).
    • (2013) Biotechnol. Adv. , vol.31 , pp. 1120-1134
    • Varshney, R.K.1
  • 29
    • 84890711827 scopus 로고    scopus 로고
    • Fast-track introgression of "qTL-hotspot" for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.)
    • Varshney, R. K. et al. Fast-track introgression of "QTL-hotspot" for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.). Plant Genome 6, 1-26 (2013b).
    • (2013) Plant Genome , vol.6 , pp. 1-26
    • Varshney, R.K.1
  • 30
    • 84900445403 scopus 로고    scopus 로고
    • Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
    • Varshney, R. K. et al. Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Teor. Appl. Genet. 127, 445-462 (2014a).
    • (2014) Teor. Appl. Genet. , vol.127 , pp. 445-462
    • Varshney, R.K.1
  • 31
    • 84897377529 scopus 로고    scopus 로고
    • Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214, an elite cultivar of chickpea
    • Varshney, R. K. et al. Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214, an elite cultivar of chickpea. Plant Genome 7, 1-11 (2014b).
    • (2014) Plant Genome , vol.7 , pp. 1-11
    • Varshney, R.K.1
  • 32
    • 84901348264 scopus 로고    scopus 로고
    • An efcient and cost-efective approach for genic microsatellite marker-based large-scale trait association mapping: Identifcation of candidate genes for seed weight in chickpea
    • Kujur, A. et al. An efcient and cost-efective approach for genic microsatellite marker-based large-scale trait association mapping: identifcation of candidate genes for seed weight in chickpea. Mol. Breed. 34, 241-265 (2014).
    • (2014) Mol. Breed. , vol.34 , pp. 241-265
    • Kujur, A.1
  • 34
    • 71049140849 scopus 로고    scopus 로고
    • Development of cost-efective SNP assays for chickpea genome analysis and breeding
    • Varshney, R. K. et al. Development of cost-efective SNP assays for chickpea genome analysis and breeding. J. SAT. Agri. Res. 3, 29-31 (2007).
    • (2007) J. SAT. Agri. Res. , vol.3 , pp. 29-31
    • Varshney, R.K.1
  • 35
    • 77953129466 scopus 로고    scopus 로고
    • Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
    • Nayak, S. N. et al. Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Teor. Appl. Genet. 120, 1415-1441 (2010).
    • (2010) Teor. Appl. Genet. , vol.120 , pp. 1415-1441
    • Nayak, S.N.1
  • 36
    • 79959287492 scopus 로고    scopus 로고
    • Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
    • Gujaria, N. et al. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Teor. Appl. Genet. 122, 1577-1589 (2011).
    • (2011) Teor. Appl. Genet. , vol.122 , pp. 1577-1589
    • Gujaria, N.1
  • 37
    • 79961197602 scopus 로고    scopus 로고
    • Gene discovery and tissue-specifc transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development
    • Garg, R. et al. Gene discovery and tissue-specifc transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol. 156, 1661-1678 (2011).
    • (2011) Plant Physiol. , vol.156 , pp. 1661-1678
    • Garg, R.1
  • 38
    • 80052500402 scopus 로고    scopus 로고
    • Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
    • Hiremath, P. J. et al. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol. J. 9, 922-931 (2011).
    • (2011) Plant Biotechnol. J. , vol.9 , pp. 922-931
    • Hiremath, P.J.1
  • 39
    • 84871643573 scopus 로고    scopus 로고
    • Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers
    • Agarwal, G. et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS One 7, e52443; DOI:10.1371/journal.pone.0052443 (2012).
    • (2012) PLoS One , vol.7 , pp. e52443
    • Agarwal, G.1
  • 40
    • 84863393432 scopus 로고    scopus 로고
    • Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome
    • Azam, S. et al. Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am. J. Bot. 99, 186-192 (2012).
    • (2012) Am. J. Bot. , vol.99 , pp. 186-192
    • Azam, S.1
  • 41
    • 84863567245 scopus 로고    scopus 로고
    • Transcriptome sequencing of wild chickpea as a rich resource for marker development
    • Jhanwar, S. et al. Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnol. J. 10, 690-702 (2012).
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 690-702
    • Jhanwar, S.1
  • 42
    • 84878341271 scopus 로고    scopus 로고
    • A draf genome sequence of the pulse crop chickpea (Cicer arietinum L.)
    • Jain, M. et al. A draf genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J. 74, 715-729 (2013).
    • (2013) Plant J. , vol.74 , pp. 715-729
    • Jain, M.1
  • 43
    • 84875176954 scopus 로고    scopus 로고
    • Draf genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
    • Varshney, R. K. et al. Draf genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 31, 240-246 (2013c).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 240-246
    • Varshney, R.K.1
  • 44
    • 84867714759 scopus 로고    scopus 로고
    • High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.)
    • Gaur, R. et al. High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res. 19, 357-373 (2012).
    • (2012) DNA Res. , vol.19 , pp. 357-373
    • Gaur, R.1
  • 45
    • 84863564349 scopus 로고    scopus 로고
    • Large-scale development of cost-efective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
    • Hiremath, P. J. et al. Large-scale development of cost-efective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol. J. 10, 716-732 (2012).
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 716-732
    • Hiremath, P.J.1
  • 46
    • 84863143122 scopus 로고    scopus 로고
    • Current state-of-art of sequencing technologies for plant genomics research
    • Tudi, M., Li, Y., Jackson, S. A., May, G. D. & Varshney, R. K. Current state-of-art of sequencing technologies for plant genomics research. Brief. Funct. Genomics 11, 3-11 (2012).
    • (2012) Brief. Funct. Genomics , vol.11 , pp. 3-11
    • Tudi, M.1    Li, Y.2    Jackson, S.A.3    May, G.D.4    Varshney, R.K.5
  • 47
    • 84883746158 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform
    • Roorkiwal, M. et al. Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform. Plant Genome 6, 1-10 (2013).
    • (2013) Plant Genome , vol.6 , pp. 1-10
    • Roorkiwal, M.1
  • 48
    • 70450202132 scopus 로고    scopus 로고
    • Te B73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P. S. et al. Te B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 49
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire, R. J. et al. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6, e19379; DOI:10.1371/journal.pone.0019379 (2011).
    • (2011) PLoS One , vol.6 , pp. e19379
    • Elshire, R.J.1
  • 50
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • Davey, J. W. et al. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 12, 499-510 (2011).
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 499-510
    • Davey, J.W.1
  • 51
    • 84858596201 scopus 로고    scopus 로고
    • Targeted enrichment strategies for next-generation plant biology
    • Cronn, R. et al. Targeted enrichment strategies for next-generation plant biology. Am. J. Bot. 99, 291-311 (2012).
    • (2012) Am. J. Bot. , vol.99 , pp. 291-311
    • Cronn, R.1
  • 52
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland, J. A., Brown, P. J., Sorrells, M. E. & Jannink, J. L. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One 7, e32253; DOI:10.1371/journal.pone.0032253 (2012).
    • (2012) PLoS One , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 53
    • 84875444971 scopus 로고    scopus 로고
    • Genotyping-by-sequencing for plant breeding and genetics
    • Poland, J. A. & Rife, T. W. Genotyping-by-sequencing for plant breeding and genetics. Plant Genome 5, 92-102 (2012).
    • (2012) Plant Genome , vol.5 , pp. 92-102
    • Poland, J.A.1    Rife, T.W.2
  • 54
    • 84876367781 scopus 로고    scopus 로고
    • Marker density and read depth for genotyping populations using genotyping-by-sequencing
    • Beissinger, T. M. et al. Marker density and read depth for genotyping populations using genotyping-by-sequencing. Genetics 193, 1073-1081 (2013).
    • (2013) Genetics , vol.193 , pp. 1073-1081
    • Beissinger, T.M.1
  • 55
    • 84928034709 scopus 로고    scopus 로고
    • Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea
    • Kujur, A. et al. Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea. Front. Plant Sci. 6, 162; DOI:10.3389/fpls.2015.00162 (2015).
    • (2015) Front. Plant Sci. , vol.6 , pp. 162
    • Kujur, A.1
  • 56
    • 84870265846 scopus 로고    scopus 로고
    • A physical, genetic and functional sequence assembly of the barley genome
    • Mayer, K. F. et al. A physical, genetic and functional sequence assembly of the barley genome. Nature 491, 711-716 (2012).
    • (2012) Nature , vol.491 , pp. 711-716
    • Mayer, K.F.1
  • 57
    • 84872789979 scopus 로고    scopus 로고
    • An improved genotyping by sequencing (GBS) approach ofering increased versatility and efciency of SNP discovery and genotyping
    • Sonah, H. et al. An improved genotyping by sequencing (GBS) approach ofering increased versatility and efciency of SNP discovery and genotyping. PLoS One 8, e54603; DOI:10.1371/journal.pone.0054603 (2013).
    • (2013) PLoS One , vol.8 , pp. e54603
    • Sonah, H.1
  • 58
    • 84879437642 scopus 로고    scopus 로고
    • Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production
    • Turber, C. S., Ma, J. M., Higgins, R. H. & Brown, P. J. Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production. Genome Biol. 14, R68; DOI:10.1186/gb-2013-14-6-r68 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R68
    • Turber, C.S.1    Ma, J.M.2    Higgins, R.H.3    Brown, P.J.4
  • 59
    • 84872197099 scopus 로고    scopus 로고
    • Population genomic and genome-wide association studies of agroclimatic traits in sorghum
    • Morris, G. P. et al. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc. Natl. Acad. Sci. USA 110, 453-458 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 453-458
    • Morris, G.P.1
  • 60
    • 84887613153 scopus 로고    scopus 로고
    • Bridging the genotyping gap: Using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
    • Spindel, J. et al. Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Teor. Appl. Genet. 126, 2699-2716 (2013).
    • (2013) Teor. Appl. Genet. , vol.126 , pp. 2699-2716
    • Spindel, J.1
  • 61
    • 84874632677 scopus 로고    scopus 로고
    • Genome wide allele frequency fngerprints (GWAFFs) of populations via genotyping by sequencing
    • Byrne, S. et al. Genome wide allele frequency fngerprints (GWAFFs) of populations via genotyping by sequencing. PLoS One 8, e57438; DOI:10.1371/journal.pone.0057438 (2013).
    • (2013) PLoS One , vol.8 , pp. e57438
    • Byrne, S.1
  • 62
    • 84889073191 scopus 로고    scopus 로고
    • Genomic prediction in maize breeding populations with genotyping-by-sequencing
    • Crossa, J. et al. Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 (Bethesda) 3, 1903-1926 (2013).
    • (2013) G3 (Bethesda) , vol.3 , pp. 1903-1926
    • Crossa, J.1
  • 63
    • 84885672827 scopus 로고    scopus 로고
    • Barley whole exome capture: A tool for genomic research in the genus Hordeum and beyond
    • Mascher, M. et al. Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76, 494-505 (2013).
    • (2013) Plant J. , vol.76 , pp. 494-505
    • Mascher, M.1
  • 64
    • 84877268772 scopus 로고    scopus 로고
    • A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato
    • Uitdewilligen, J. G. et al. A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One 8, e62355; DOI: 10.1371/journal.pone.0062355 (2013).
    • (2013) PLoS One , vol.8 , pp. e62355
    • Uitdewilligen, J.G.1
  • 65
    • 84897452326 scopus 로고    scopus 로고
    • Genome wide association mapping of Sclerotinia sclerotiorum resistance in soybean with a genotyping-by-sequencing approach
    • Bastien, M., Sonah, H. & Belzile, F. Genome wide association mapping of Sclerotinia sclerotiorum resistance in soybean with a genotyping-by-sequencing approach. Genome 7, 1-13 (2014).
    • (2014) Genome , vol.7 , pp. 1-13
    • Bastien, M.1    Sonah, H.2    Belzile, F.3
  • 66
    • 84901350188 scopus 로고    scopus 로고
    • Efcient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses
    • Huang, B. E., Raghavan, C., Mauleon, R., Broman, K. W. & Leung, H. Efcient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses. Genetics 197, 401-404 (2014).
    • (2014) Genetics , vol.197 , pp. 401-404
    • Huang, B.E.1    Raghavan, C.2    Mauleon, R.3    Broman, K.W.4    Leung, H.5
  • 67
    • 84893160089 scopus 로고    scopus 로고
    • An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley
    • Liu, H. et al. An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15, 104; DOI:10.1186/1471-2164-15-104 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 104
    • Liu, H.1
  • 68
    • 84903735544 scopus 로고    scopus 로고
    • Rapid identifcation of alleles at the soybean maturity gene E3 using genotyping by sequencing and a haplotype-based approach
    • Tardivel, A., Sonah, H., Belzile, F. & O'Donoughue, L. S. Rapid identifcation of alleles at the soybean maturity gene E3 using genotyping by sequencing and a haplotype-based approach. Plant Genome 4, 106-111 (2014).
    • (2014) Plant Genome , vol.4 , pp. 106-111
    • Tardivel, A.1    Sonah, H.2    Belzile, F.3    O'Donoughue, L.S.4
  • 69
    • 0033792207 scopus 로고    scopus 로고
    • Te cellulose synthase superfamily
    • Richmond, T. A. & Somerville, C. R. Te cellulose synthase superfamily. Plant Physiol. 124, 495-498 (2000).
    • (2000) Plant Physiol. , vol.124 , pp. 495-498
    • Richmond, T.A.1    Somerville, C.R.2
  • 70
    • 80053388300 scopus 로고    scopus 로고
    • Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
    • Zhao, K. et al. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat. Commun. 2, 467; DOI:10.1038/ncomms1467 (2011).
    • (2011) Nat. Commun. , vol.2 , pp. 467
    • Zhao, K.1
  • 71
    • 84900397393 scopus 로고    scopus 로고
    • Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches
    • Tudi, M. et al. Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches. PLoS One 9, e96758; DOI: 10.1371/journal.pone.0096758 (2014).
    • (2014) PLoS One , vol.9 , pp. e96758
    • Tudi, M.1
  • 72
    • 33645409862 scopus 로고    scopus 로고
    • GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
    • Fan, C. et al. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Teor. Appl. Genet. 112, 1164-1171 (2006).
    • (2006) Teor. Appl. Genet. , vol.112 , pp. 1164-1171
    • Fan, C.1
  • 73
    • 78650601870 scopus 로고    scopus 로고
    • Linking diferential domain functions of the GS3 protein to natural variation of grain size in rice
    • Mao, H. et al. Linking diferential domain functions of the GS3 protein to natural variation of grain size in rice. Proc. Natl. Acad. Sci. USA 107, 19579-19584 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19579-19584
    • Mao, H.1
  • 74
    • 82255192352 scopus 로고    scopus 로고
    • Natural variation in GS5 plays an important role in regulating grain size and yield in rice
    • Li, Y. et al. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat. Genet. 43, 1266-1270 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1266-1270
    • Li, Y.1
  • 75
    • 84871843521 scopus 로고    scopus 로고
    • Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a signifcant yield increase in rice
    • Zhang, X. et al. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a signifcant yield increase in rice. Proc. Natl. Acad. Sci. USA 109, 21534-21539 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 21534-21539
    • Zhang, X.1
  • 76
    • 34547416085 scopus 로고    scopus 로고
    • Population derived from a kabuli× desi cross
    • Cobos, M. J. et al. Population derived from a kabuli× desi cross. Ann. Appl. Biol. 151, 33-42 (2007).
    • (2007) Ann. Appl. Biol. , vol.151 , pp. 33-42
    • Cobos, M.J.1
  • 77
    • 77954669285 scopus 로고    scopus 로고
    • Inheritance of seed size in chickpea (Cicer arietinum L.) and identifcation of QTL based on 100-seed weight and seed size index
    • Hossain, S., Ford, R., McNeil, D., Pittock, C. & Panozzo, J. F. Inheritance of seed size in chickpea (Cicer arietinum L.) and identifcation of QTL based on 100-seed weight and seed size index. Aust. J. Crop. Sci. 4, 126-135 (2010).
    • (2010) Aust. J. Crop. Sci. , vol.4 , pp. 126-135
    • Hossain, S.1    Ford, R.2    McNeil, D.3    Pittock, C.4    Panozzo, J.F.5
  • 78
    • 33744830059 scopus 로고    scopus 로고
    • An SNP caused loss of seed shattering during rice domestication
    • Konishi, S. et al. An SNP caused loss of seed shattering during rice domestication. Science 312, 1392-1396 (2006).
    • (2006) Science , vol.312 , pp. 1392-1396
    • Konishi, S.1
  • 79
    • 84888159043 scopus 로고    scopus 로고
    • Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
    • Li, S. et al. Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth. Nat. Commun. 4, 2793; DOI:10.1038/ncomms3793 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2793
    • Li, S.1
  • 80
    • 0346037064 scopus 로고    scopus 로고
    • Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis
    • Beeckman, T. et al. Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis. Plant Physiol. 130, 1883-1893 (2002).
    • (2002) Plant Physiol. , vol.130 , pp. 1883-1893
    • Beeckman, T.1
  • 81
    • 64749089220 scopus 로고    scopus 로고
    • Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis
    • Oh, E. et al. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell 21, 403-419 (2009).
    • (2009) Plant Cell , vol.21 , pp. 403-419
    • Oh, E.1
  • 82
    • 80755189003 scopus 로고    scopus 로고
    • Phytochrome regulation of cellulose synthesis in Arabidopsis
    • Bischof, V. et al. Phytochrome regulation of cellulose synthesis in Arabidopsis. Curr. Biol. 21, 1822-1827 (2011).
    • (2011) Curr. Biol. , vol.21 , pp. 1822-1827
    • Bischof, V.1
  • 84
    • 0035916821 scopus 로고    scopus 로고
    • Cellulose: How many cellulose synthases to make a plant?
    • Perrin, R. M. Cellulose: how many cellulose synthases to make a plant? Curr. Biol. 11, R213-R216 (2001).
    • (2001) Curr. Biol. , vol.11 , pp. R213-R216
    • Perrin, R.M.1
  • 85
    • 34848849067 scopus 로고    scopus 로고
    • Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis
    • Persson, S. et al. Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis. Proc. Natl. Acad. Sci. USA 104, 15566-15571 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 15566-15571
    • Persson, S.1
  • 86
    • 84857169506 scopus 로고    scopus 로고
    • Expression of the Arabidopsis thaliana BBX32 gene in soybean increases grain yield
    • Preuss, S. B. et al. Expression of the Arabidopsis thaliana BBX32 gene in soybean increases grain yield. PLoS One 7, e30717; DOI:10.1371/journal.pone.0030717 (2012).
    • (2012) PLoS One , vol.7 , pp. e30717
    • Preuss, S.B.1
  • 87
    • 0035027563 scopus 로고    scopus 로고
    • Pollen tubes of Nicotiana alata express two genes from diferent beta-glucan synthase families
    • Doblin, M. S., De Melis, L., Newbigin, E., Bacic, A. & Read, S. M. Pollen tubes of Nicotiana alata express two genes from diferent beta-glucan synthase families. Plant Physiol. 125, 2040-2052 (2001).
    • (2001) Plant Physiol. , vol.125 , pp. 2040-2052
    • Doblin, M.S.1    De Melis, L.2    Newbigin, E.3    Bacic, A.4    Read, S.M.5
  • 88
    • 0037321503 scopus 로고    scopus 로고
    • AtCSLA7, a cellulose synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis
    • Goubet, F. et al. AtCSLA7, a cellulose synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis. Plant Physiol. 131, 547-557 (2003).
    • (2003) Plant Physiol. , vol.131 , pp. 547-557
    • Goubet, F.1
  • 89
    • 80054123322 scopus 로고    scopus 로고
    • Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes
    • Wang, W. et al. Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes. J. Exp. Bot. 62, 5161-5177 (2011).
    • (2011) J. Exp. Bot. , vol.62 , pp. 5161-5177
    • Wang, W.1
  • 90
    • 0034490076 scopus 로고    scopus 로고
    • PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifcally in roots and dark-grown hypocotyls of Arabidopsis
    • Fagard, M. et al. PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifcally in roots and dark-grown hypocotyls of Arabidopsis. Plant Cell 12, 2409-2424 (2000).
    • (2000) Plant Cell , vol.12 , pp. 2409-2424
    • Fagard, M.1
  • 91
    • 0038367947 scopus 로고    scopus 로고
    • Reduced cellulose synthesis invokes lignifcation and defense responses in Arabidopsis thaliana
    • Caño-Delgado, A., Penfeld, S., Smith, C., Catley, M. & Bevan, M. Reduced cellulose synthesis invokes lignifcation and defense responses in Arabidopsis thaliana. Plant J. 34, 351-362 (2003).
    • (2003) Plant J. , vol.34 , pp. 351-362
    • Caño-Delgado, A.1    Penfeld, S.2    Smith, C.3    Catley, M.4    Bevan, M.5
  • 92
    • 22544465293 scopus 로고    scopus 로고
    • Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis
    • Chen, Z. et al. Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J. 43, 273-283 (2005).
    • (2005) Plant J. , vol.43 , pp. 273-283
    • Chen, Z.1
  • 93
    • 0034951896 scopus 로고    scopus 로고
    • A mini-core subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement
    • Upadhyaya, H. D. & Ortiz, R. A mini-core subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement. Teor. Appl. Genet. 102, 1292-1298 (2001).
    • (2001) Teor. Appl. Genet. , vol.102 , pp. 1292-1298
    • Upadhyaya, H.D.1    Ortiz, R.2
  • 94
    • 0035129097 scopus 로고    scopus 로고
    • Development of a chickpea core subset using geographic distribution and quantitative traits
    • Upadhyaya, H. D., Bramel, P. J. & Singh, S. Development of a chickpea core subset using geographic distribution and quantitative traits. Crop Sci. 41, 206-210 (2001).
    • (2001) Crop Sci. , vol.41 , pp. 206-210
    • Upadhyaya, H.D.1    Bramel, P.J.2    Singh, S.3
  • 95
    • 0036232675 scopus 로고    scopus 로고
    • Phenotypic diversity for morphological and agronomic characteristics in chickpea core collection
    • Upadhyaya, H. D., Ortiz, R., Bramel, P. J. & Singh, S. Phenotypic diversity for morphological and agronomic characteristics in chickpea core collection. Euphytica 123, 333-342 (2002).
    • (2002) Euphytica , vol.123 , pp. 333-342
    • Upadhyaya, H.D.1    Ortiz, R.2    Bramel, P.J.3    Singh, S.4
  • 96
    • 84865299428 scopus 로고    scopus 로고
    • SNPs in stress-responsive rice genes: Validation, genotyping, functional relevance and population structure
    • Parida, S. K., Mukerji, M., Singh, A. K., Singh, N. K. & Mohapatra, T. SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure. BMC Genomics 13, 426; DOI:10.1186/1471-2164-13-426 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 426
    • Parida, S.K.1    Mukerji, M.2    Singh, A.K.3    Singh, N.K.4    Mohapatra, T.5
  • 97
    • 84907185297 scopus 로고    scopus 로고
    • Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea
    • Saxena, M. S. et al. Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea. PLoS One 9, e107484; DOI:10.1371/journal.pone.0107484 (2014b).
    • (2014) PLoS One , vol.9 , pp. e107484
    • Saxena, M.S.1
  • 98
    • 0001738523 scopus 로고
    • Stage of development descriptions for soybeans, Glycine max (L.) Merrill
    • Fehr, W. R., Caviness, C. E., Burmood, D. T. & Pennington. J. S. Stage of development descriptions for soybeans, Glycine max (L.) Merrill. Crop Sci. 11, 929-931 (1971).
    • (1971) Crop Sci. , vol.11 , pp. 929-931
    • Fehr, W.R.1    Caviness, C.E.2    Burmood, D.T.3    Pennington, J.S.4
  • 99
    • 77956981950 scopus 로고
    • Flower and pod development in water-defcient soybeans (Glycine max L. Merr.)
    • Westgate, M. E. & Peterson, C. M. Flower and pod development in water-defcient soybeans (Glycine max L. Merr.). J. Exp. Bot. 258, 109-117 (1993).
    • (1993) J. Exp. Bot. , vol.258 , pp. 109-117
    • Westgate, M.E.1    Peterson, C.M.2
  • 100
    • 84883614692 scopus 로고    scopus 로고
    • Functional characterization of a serine-threonine protein kinase from Bambusa balcooa that implicates in cellulose overproduction and superior quality fber formation
    • Ghosh, J. S., Chaudhuri, S., Dey, N. & Pal, A. Functional characterization of a serine-threonine protein kinase from Bambusa balcooa that implicates in cellulose overproduction and superior quality fber formation. BMC Plant Biol. 13, 128; DOI:10.1186/1471-2229-13-128 (2013).
    • (2013) BMC Plant Biol. , vol.13 , pp. 128
    • Ghosh, J.S.1    Chaudhuri, S.2    Dey, N.3    Pal, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.