-
1
-
-
80051478843
-
Genome evolution and meiotic maps by massively parallel DNA sequencing: Spotted gar, an outgroup for the teleost genome duplication
-
Amores, A., J. Catchen, A. Ferrara, Q. Fontenot, and J. H. Postlethwait, 2011 Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Genetics 188: 799-808.
-
(2011)
Genetics
, vol.188
, pp. 799-808
-
-
Amores, A.1
Catchen, J.2
Ferrara, A.3
Fontenot, Q.4
Postlethwait, J.H.5
-
2
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird, N. A., P. D. Etter, T. S. Atwood, M. C. Currey, A. L. Shiver et al., 2008 Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3(10): e3376.
-
(2008)
PLoS ONE
, vol.3
, Issue.10
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
-
3
-
-
79955609628
-
Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
-
Baxter, S. W., J. W. Davey, J. S. Johnston, A. M. Shelton, and D. G. Heckel, 2011 Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS ONE 6(4): e19315.
-
(2011)
PLoS ONE
, vol.6
, Issue.4
-
-
Baxter, S.W.1
Davey, J.W.2
Johnston, J.S.3
Shelton, A.M.4
Heckel, D.G.5
-
4
-
-
0037958742
-
R/qtl: QTL mapping in experimental crosses
-
Broman, K. W., H. Wu, S. Sen, and G. A. Churchill, 2003 R/qtl: QTL mapping in experimental crosses. Bioinformatics 19: 889-890.
-
(2003)
Bioinformatics
, vol.19
, pp. 889-890
-
-
Broman, K.W.1
Wu, H.2
Sen, S.3
Churchill, G.A.4
-
5
-
-
65549107163
-
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver
-
Brunner, A. L., D. S. Johnson, S. W. Kim, A. Valouev, T. E. Reddy et al., 2009 Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res. 19: 1044-1056.
-
(2009)
Genome Res
, vol.19
, pp. 1044-1056
-
-
Brunner, A.L.1
Johnson, D.S.2
Kim, S.W.3
Valouev, A.4
Reddy, T.E.5
-
6
-
-
78650792488
-
Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley
-
Chutimanitsakun, Y., R. W. Nipper, A. Cuesta-Marcos, L. Cistue, A. Corey et al., 2011 Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley. BMC Genomics 12: 4.
-
(2011)
BMC Genomics
, vol.12
, pp. 4
-
-
Chutimanitsakun, Y.1
Nipper, R.W.2
Cuesta-Marcos, A.3
Cistue, L.4
Corey, A.5
-
7
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey, J. W., P. A. Hohenlohe, P. D. Etter, J. Q. Boone, J. M. Catchen et al., 2011 Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 12: 499-510.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
-
8
-
-
79961184281
-
B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize
-
Eichten, S. R., J. M. Foerster, N. de Leon, Y. Kai, C. Yeh et al., 2011 B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol. 156(4): 1679-1690.
-
(2011)
Plant Physiol
, vol.156
, Issue.4
, pp. 1679-1690
-
-
Eichten, S.R.1
Foerster, J.M.2
de Leon, N.3
Kai, Y.4
Yeh, C.5
-
9
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire, R. J., J. C. Glaubitz, Q. Sun, J. A. Poland, K. Kawamoto et al., 2011 A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6(5): e19379.
-
(2011)
PLoS ONE
, vol.6
, Issue.5
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
-
11
-
-
33751319169
-
Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize
-
Fu, Y., T. Wen, Y. I. Ronin, H. D. Chen, L. Guo et al., 2006 Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics 174: 1671-1683.
-
(2006)
Genetics
, vol.174
, pp. 1671-1683
-
-
Fu, Y.1
Wen, T.2
Ronin, Y.I.3
Chen, H.D.4
Guo, L.5
-
12
-
-
84858383903
-
Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing
-
Hansey, C. N., B. Vaillancourt, R. S. Sekhon, N. de Leon, S. M. Kaeppler et al., 2012 Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing. PLoS ONE 7(3): e33071.
-
(2012)
PLoS ONE
, vol.7
, Issue.3
-
-
Hansey, C.N.1
Vaillancourt, B.2
Sekhon, R.S.3
de Leon, N.4
Kaeppler, S.M.5
-
13
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. elegans
-
Hillier, L. W., G. T. Marth, A. R. Quinlan, D. Dooling, G. Gewell et al., 2008 Whole-genome sequencing and variant discovery in C. elegans. Nat. Methods 5(2): 183-188.
-
(2008)
Nat. Methods
, vol.5
, Issue.2
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Gewell, G.5
-
14
-
-
0023988195
-
Genomic mapping by fingerprinting random clones: A mathematical analysis
-
Lander, E. S., and M. S. Waterman, 1988 Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2: 231-239.
-
(1988)
Genomics
, vol.2
, pp. 231-239
-
-
Lander, E.S.1
Waterman, M.S.2
-
15
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., C. Trapnell, M. Pop, and S. L. Salzberg, 2009 Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10(3): R25.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
16
-
-
0036010768
-
Expanding the genetic map of maize with the intermated B73 × Mo17 (IBM) population
-
Lee, M., N. Sharapova, W. D. Beavis, D. Grant, M. Katt et al., 2002 Expanding the genetic map of maize with the intermated B73 × Mo17 (IBM) population. Plant Mol. Biol. 48: 453-461.
-
(2002)
Plant Mol. Biol
, vol.48
, pp. 453-461
-
-
Lee, M.1
Sharapova, N.2
Beavis, W.D.3
Grant, D.4
Katt, M.5
-
17
-
-
40849134474
-
Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize
-
Lough, A. N., L. M. Roark, K. Akio, T. S. Ream, J. C. Lamb et al., 2008 Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize. Genetics 178: 47-55.
-
(2008)
Genetics
, vol.178
, pp. 47-55
-
-
Lough, A.N.1
Roark, L.M.2
Akio, K.3
Ream, T.S.4
Lamb, J.C.5
-
18
-
-
84856770811
-
Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
-
Luo, C., D. Tsementzi, N. Kyrpides, T. Read, and K. T. Konstantinidis, 2012 Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS ONE 7(2): e30087.
-
(2012)
PLoS ONE
, vol.7
, Issue.2
-
-
Luo, C.1
Tsementzi, D.2
Kyrpides, N.3
Read, T.4
Konstantinidis, K.T.5
-
19
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
-
Minoche, A. E., J. C. Dohm, and H. Himmelbauer, 2011 Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biol. 12: R112.
-
(2011)
Genome Biol
, vol.12
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
20
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
Ng, S. B., E. H. Turner, P. D. Robertson, S. D. Flygare, A. W. Bigham et al., 2009 Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461: 272-276.
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
-
21
-
-
79959297013
-
Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
-
Pfender, W. F., M. C. Saha, E. A. Johnson, and M. B. Slabaugh, 2011 Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor. Appl. Genet. 122: 1467-1480.
-
(2011)
Theor. Appl. Genet
, vol.122
, pp. 1467-1480
-
-
Pfender, W.F.1
Saha, M.C.2
Johnson, E.A.3
Slabaugh, M.B.4
-
22
-
-
0034048442
-
Optimal marker density for interval mapping in a backcross population
-
Piepho, H. P., 2000 Optimal marker density for interval mapping in a backcross population. Heredity 84: 437-440.
-
(2000)
Heredity
, vol.84
, pp. 437-440
-
-
Piepho, H.P.1
-
23
-
-
84857520461
-
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
-
Poland, J. A., P. J. Brown, M. E. Sorrells, and J. Jannink, 2012 Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS ONE 7(2): e32253.
-
(2012)
PLoS ONE
, vol.7
, Issue.2
-
-
Poland, J.A.1
Brown, P.J.2
Sorrells, M.E.3
Jannink, J.4
-
24
-
-
79961135005
-
-
R Foundation for Statistical Computing, Vienna. Available at, R Development Core Team
-
R Development Core Team, 2011 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. Available at http://www.r-project.org/.
-
(2011)
R: A Language and Environment For Statistical Computing
-
-
-
25
-
-
0021695885
-
Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics
-
Saghai-Maroof, M. A., K. M. Soliman, R. A. Jorgensen, and R. W. Allard, 1984 Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81: 8014-8018.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 8014-8018
-
-
Saghai-Maroof, M.A.1
Soliman, K.M.2
Jorgensen, R.A.3
Allard, R.W.4
-
26
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P. S., D. Ware, R. S. Fulton, J. C. Stein, F. Wei et al., 2009 The B73 maize genome: complexity, diversity, and dynamics. Science 326(5956): 1112-1115.
-
(2009)
Science
, vol.326
, Issue.5956
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
-
27
-
-
0035979181
-
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L)
-
Tenaillon, M. I., M. C. Sawkins, A. D. Long, R. L. Gaut, J. F. Doebley et al., 2001 Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. USA 98: 9161-9166.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9161-9166
-
-
Tenaillon, M.I.1
Sawkins, M.C.2
Long, A.D.3
Gaut, R.L.4
Doebley, J.F.5
-
28
-
-
22144476219
-
The map expansion obtained with recombinant inbred strains and intermated recombinant inbred populations for finite generation designs
-
Teuscher, F., V. Guiard, P. E. Rudolph, and G. A. Brockmann, 2005 The map expansion obtained with recombinant inbred strains and intermated recombinant inbred populations for finite generation designs. Genetics 170: 875-879.
-
(2005)
Genetics
, vol.170
, pp. 875-879
-
-
Teuscher, F.1
Guiard, V.2
Rudolph, P.E.3
Brockmann, G.A.4
-
29
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: Computational challenges and solutions
-
Treangen, T. J., and S. L. Salzberg, 2011 Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat. Rev. Genet. 13: 36-46.
-
(2011)
Nat. Rev. Genet
, vol.13
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
30
-
-
43149110423
-
Complexity reduction of polymorphic sequences (CRoPS): A novel approach for large-scale polymorphism discovery in complex genomes
-
Van Orsouw, N. J., R. C. J. Hogers, A. Janssen, F. Yalcin, S. Snoeijers et al., 2007 Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes. PLoS ONE 2(11): e1172.
-
(2007)
PLoS ONE
, vol.2
, Issue.11
-
-
Van Orsouw, N.J.1
Hogers, R.C.J.2
Janssen, A.3
Yalcin, F.4
Snoeijers, S.5
-
31
-
-
33746590339
-
Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
-
Wendl, M. C., 2006 Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing. Bull. Math. Biol. 68: 179-196.
-
(2006)
Bull. Math. Biol
, vol.68
, pp. 179-196
-
-
Wendl, M.C.1
|